Wall clock time and date at job start Tue Mar 31 2020 06:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86803 * 120.00429 * 2 1 4 4 H 1.48507 * 109.46998 * 274.99062 * 3 2 1 5 5 H 1.48496 * 109.46907 * 34.98541 * 3 2 1 6 6 H 1.48498 * 109.47304 * 154.99031 * 3 2 1 7 7 C 1.39910 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00130 * 147.61348 * 7 2 1 9 9 C 1.41153 * 119.99893 * 327.60677 * 7 2 1 10 10 C 1.40871 * 120.16071 * 157.95161 * 9 7 2 11 11 C 1.36375 * 119.82499 * 180.02562 * 10 9 7 12 12 C 1.39475 * 120.17097 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83763 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99597 * 37.76327 * 13 12 11 15 15 O 1.21289 * 119.99736 * 356.69733 * 14 13 12 16 16 C 1.50697 * 120.00109 * 176.69893 * 14 13 12 17 17 C 1.52996 * 109.47229 * 179.97438 * 16 14 13 18 18 N 1.46497 * 109.47078 * 179.97438 * 17 16 14 19 19 C 1.34522 * 124.46233 * 269.98139 * 18 17 16 20 20 O 1.21441 * 125.71075 * 0.03804 * 19 18 17 21 21 C 1.47821 * 108.57924 * 180.02562 * 19 18 17 22 22 C 1.38566 * 134.29264 * 180.02562 * 21 19 18 23 23 C 1.38608 * 119.72005 * 179.97438 * 22 21 19 24 24 C 1.38230 * 120.45273 * 0.02937 * 23 22 21 25 25 C 1.38608 * 120.46543 * 359.95493 * 24 23 22 26 26 C 1.38559 * 119.71923 * 0.02729 * 25 24 23 27 27 C 1.34530 * 124.45941 * 90.00461 * 18 17 16 28 28 O 1.21445 * 125.70645 * 0.02562 * 27 18 17 29 29 C 1.39481 * 120.33197 * 0.25195 * 12 11 10 30 30 C 1.36377 * 120.17116 * 359.48616 * 29 12 11 31 31 H 0.97004 * 119.99559 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.09086 * 0.02562 * 10 9 7 33 33 H 1.08004 * 119.91377 * 179.97438 * 11 10 9 34 34 H 0.96994 * 120.00298 * 217.75622 * 13 12 11 35 35 H 1.09002 * 109.46879 * 59.99875 * 16 14 13 36 36 H 1.09001 * 109.47266 * 300.00010 * 16 14 13 37 37 H 1.09002 * 109.46770 * 60.00448 * 17 16 14 38 38 H 1.09001 * 109.47528 * 300.00490 * 17 16 14 39 39 H 1.08001 * 120.13985 * 359.67017 * 22 21 19 40 40 H 1.07999 * 119.77277 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.76420 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.13949 * 180.02562 * 25 24 23 43 43 H 1.08012 * 119.91745 * 179.74345 * 29 12 11 44 44 H 1.08002 * 120.08928 * 180.25664 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4970 2.6199 0.8027 6 1 3.5891 1.4119 0.5919 7 6 2.0081 -1.2117 -0.0005 8 1 2.9621 -1.2843 -0.5015 9 6 1.4670 -2.3393 0.6538 10 6 1.8851 -3.6352 0.2932 11 6 1.3574 -4.7198 0.9296 12 6 0.4058 -4.5485 1.9347 13 7 -0.1288 -5.6608 2.5796 14 6 0.6564 -6.7202 2.8581 15 8 1.8134 -6.7298 2.4942 16 6 0.0969 -7.8928 3.6216 17 6 1.1870 -8.9511 3.8017 18 7 0.6432 -10.0907 4.5445 19 6 0.6658 -10.2066 5.8845 20 8 1.1325 -9.3954 6.6584 21 6 0.0273 -11.4866 6.2574 22 6 -0.2294 -12.1258 7.4598 23 6 -0.8661 -13.3570 7.4612 24 6 -1.2455 -13.9509 6.2721 25 6 -0.9955 -13.3232 5.0619 26 6 -0.3603 -12.0920 5.0450 27 6 0.0558 -11.1593 3.9763 28 8 -0.1048 -11.3297 2.7846 29 6 -0.0173 -3.2687 2.2933 30 6 0.5051 -2.1742 1.6697 31 1 -0.4850 0.8401 0.0004 32 1 2.6216 -3.7696 -0.4852 33 1 1.6766 -5.7141 0.6539 34 1 -1.0662 -5.6731 2.8284 35 1 -0.7379 -8.3221 3.0676 36 1 -0.2498 -7.5577 4.5992 37 1 2.0220 -8.5220 4.3556 38 1 1.5333 -9.2861 2.8240 39 1 0.0697 -11.6689 8.3915 40 1 -1.0662 -13.8561 8.3978 41 1 -1.7406 -14.9107 6.2862 42 1 -1.2947 -13.7918 4.1359 43 1 -0.7577 -3.1439 3.0698 44 1 0.1796 -1.1836 1.9512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008126032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:10 Heat of formation + Delta-G solvation = -29.490391 kcal Electronic energy + Delta-G solvation = -30065.976597 eV Core-core repulsion = 25720.925988 eV Total energy + Delta-G solvation = -4345.050608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.69333 -39.72551 -38.94801 -38.93133 -37.32034 -36.22224 -34.51785 -33.53091 -33.02803 -31.68893 -30.69956 -29.56610 -28.92502 -26.11391 -25.51895 -24.60650 -22.92620 -22.62704 -21.56905 -20.72769 -20.19216 -19.65323 -18.22368 -17.78489 -17.40455 -17.23107 -16.71841 -16.46740 -15.95664 -15.77103 -15.35985 -15.21539 -15.02414 -14.79858 -14.55572 -14.31454 -14.04597 -13.79868 -13.59907 -13.30357 -12.92025 -12.86171 -12.65748 -12.61874 -12.20771 -12.09628 -11.98411 -11.55607 -11.32299 -11.15442 -10.95801 -10.91553 -10.65103 -10.54132 -10.24644 -10.16261 -9.78214 -9.76394 -9.74765 -9.45391 -9.07871 -8.70576 -7.55266 -7.16080 -6.89385 -4.27883 -0.41540 0.41762 1.56381 1.94156 2.55022 2.56956 2.94554 3.05021 3.06815 3.09635 3.12073 3.17069 3.33264 3.72420 3.88819 3.89410 4.06279 4.31234 4.49081 4.50464 4.63769 4.65710 4.71219 4.87282 4.94459 5.18711 5.22350 5.35295 5.37643 5.47541 5.54183 5.62787 5.67935 5.74281 6.01890 6.18643 6.34591 6.42217 6.76006 6.84000 6.94304 6.99562 7.13628 7.28060 7.30114 7.55984 7.67529 7.87559 8.01559 8.24320 8.27014 8.54194 8.72972 8.83448 8.98876 10.01321 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.030622 B = 0.001553 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.146902 B =18023.825362 C =18296.617861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.465 4.465 8 H 0.082 0.918 9 C 0.113 3.887 10 C -0.224 4.224 11 C -0.065 4.065 12 C -0.025 4.025 13 N -0.646 5.646 14 C 0.505 3.495 15 O -0.534 6.534 16 C -0.157 4.157 17 C 0.128 3.872 18 N -0.575 5.575 19 C 0.572 3.428 20 O -0.456 6.456 21 C -0.138 4.138 22 C -0.046 4.046 23 C -0.097 4.097 24 C -0.097 4.097 25 C -0.046 4.046 26 C -0.138 4.138 27 C 0.572 3.428 28 O -0.456 6.456 29 C -0.101 4.101 30 C -0.171 4.171 31 H 0.283 0.717 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.395 0.605 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.089 0.911 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 -25.036 14.687 29.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.100 0.900 9 C 0.110 3.890 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.117 4.117 13 N -0.288 5.288 14 C 0.291 3.709 15 O -0.411 6.411 16 C -0.198 4.198 17 C 0.008 3.992 18 N -0.317 5.317 19 C 0.360 3.640 20 O -0.326 6.326 21 C -0.142 4.142 22 C -0.064 4.064 23 C -0.115 4.115 24 C -0.115 4.115 25 C -0.064 4.064 26 C -0.142 4.142 27 C 0.361 3.639 28 O -0.327 6.327 29 C -0.121 4.121 30 C -0.191 4.191 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.228 0.772 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.107 0.893 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.790 -24.474 14.134 28.849 hybrid contribution -0.319 0.890 0.123 0.954 sum -6.109 -23.584 14.257 28.228 Atomic orbital electron populations 1.69947 1.08099 1.29886 1.31230 1.25947 0.94363 1.01541 0.91513 0.86505 0.81543 0.80791 0.79218 1.19438 1.19880 1.18069 1.19521 1.05411 0.93765 1.30562 0.89968 1.17606 0.89686 0.91873 0.89850 1.20598 1.07093 0.92307 1.04399 1.20301 0.96328 0.98032 0.93771 1.17049 1.07509 0.84785 1.02311 1.42903 1.12011 1.16021 1.57892 1.20104 0.86417 0.83842 0.80540 1.90709 1.17341 1.80090 1.52983 1.21942 1.00153 0.95301 1.02413 1.21524 0.96087 0.83186 0.98391 1.46652 1.55243 1.21164 1.08677 1.18401 0.77924 0.85940 0.81702 1.90842 1.41770 1.45732 1.54299 1.20608 1.02546 0.95980 0.95053 1.20834 0.94975 0.93875 0.96761 1.21486 0.96461 0.94413 0.99154 1.21485 0.98206 1.00201 0.91630 1.20830 0.94358 0.91849 0.99401 1.20604 1.02875 0.96944 0.93772 1.18402 0.76454 0.81206 0.87883 1.90840 1.50901 1.75759 1.15200 1.20172 1.00664 0.91599 0.99665 1.20614 1.02554 0.96627 0.99296 0.90584 0.88707 0.87931 0.77190 0.88564 0.88496 0.87385 0.87404 0.83953 0.84029 0.84032 0.83954 0.89277 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.48 11.78 55.55 0.65 -18.82 16 2 C 0.09 2.19 4.77 -17.34 -0.08 2.11 16 3 Si 0.90 18.30 29.66 -169.99 -5.04 13.26 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -12.38 8.94 -37.85 -0.34 -12.72 16 8 H 0.08 2.12 8.02 -52.49 -0.42 1.70 16 9 C 0.11 3.04 5.57 -106.80 -0.60 2.45 16 10 C -0.22 -5.78 9.74 -39.26 -0.38 -6.16 16 11 C -0.06 -1.58 8.59 -39.79 -0.34 -1.92 16 12 C -0.02 -0.56 6.25 -83.57 -0.52 -1.08 16 13 N -0.65 -11.50 5.30 -9.74 -0.05 -11.56 16 14 C 0.51 8.70 7.64 -10.99 -0.08 8.62 16 15 O -0.53 -11.22 13.60 5.55 0.08 -11.15 16 16 C -0.16 -1.95 6.02 -27.89 -0.17 -2.11 16 17 C 0.13 1.60 5.03 -4.05 -0.02 1.58 16 18 N -0.58 -6.48 2.62 -117.62 -0.31 -6.79 16 19 C 0.57 6.34 8.02 -12.45 -0.10 6.24 16 20 O -0.46 -6.21 17.68 5.42 0.10 -6.11 16 21 C -0.14 -1.16 6.40 -104.83 -0.67 -1.83 16 22 C -0.05 -0.26 10.09 -39.32 -0.40 -0.65 16 23 C -0.10 -0.33 10.04 -39.45 -0.40 -0.72 16 24 C -0.10 -0.33 10.03 -39.45 -0.40 -0.72 16 25 C -0.05 -0.25 10.09 -39.33 -0.40 -0.65 16 26 C -0.14 -1.15 6.41 -104.84 -0.67 -1.83 16 27 C 0.57 6.30 8.02 -12.45 -0.10 6.20 16 28 O -0.46 -6.16 17.68 5.41 0.10 -6.06 16 29 C -0.10 -2.33 9.90 -39.79 -0.39 -2.73 16 30 C -0.17 -4.41 8.74 -39.26 -0.34 -4.76 16 31 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 32 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.10 2.46 6.45 -52.48 -0.34 2.12 16 34 H 0.39 5.58 8.82 -40.82 -0.36 5.22 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.11 1.43 7.92 -51.93 -0.41 1.02 16 38 H 0.11 1.41 7.92 -51.93 -0.41 1.00 16 39 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.14 0.08 8.06 -52.49 -0.42 -0.34 16 41 H 0.14 0.08 8.06 -52.49 -0.42 -0.34 16 42 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 44 H 0.11 2.79 6.52 -52.49 -0.34 2.45 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -33.32 388.52 -9.83 -43.14 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.80 Total: 8.92 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -6.40 Total: -10.69 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.29 Total: -37.17 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.27 Total: -23.32 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.04 Total: 13.26 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.32 -9.83 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.653 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds