Wall clock time and date at job start Tue Mar 31 2020 05:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86801 * 120.00259 * 2 1 4 4 H 1.48493 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47196 * 300.00493 * 3 2 1 6 6 H 1.48507 * 109.46620 * 60.00104 * 3 2 1 7 7 C 1.39911 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00055 * 175.56002 * 7 2 1 9 9 C 1.41129 * 119.99614 * 355.55682 * 7 2 1 10 10 C 1.40884 * 120.15921 * 214.78866 * 9 7 2 11 11 C 1.36351 * 119.83109 * 180.02562 * 10 9 7 12 12 C 1.39522 * 120.16755 * 359.97438 * 11 10 9 13 13 N 1.39089 * 119.83738 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00214 * 35.30597 * 13 12 11 15 15 O 1.21710 * 120.00291 * 355.71781 * 14 13 12 16 16 C 1.46589 * 120.00119 * 175.71681 * 14 13 12 17 17 C 1.36599 * 125.99207 * 180.02562 * 16 14 13 18 18 C 1.40343 * 106.70511 * 179.97438 * 17 16 14 19 19 C 1.35146 * 107.11971 * 359.97438 * 18 17 16 20 20 C 1.50701 * 125.61050 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.47409 * 90.00253 * 20 19 18 22 22 C 1.35902 * 117.00108 * 179.97438 * 21 20 19 23 23 C 1.38727 * 120.05419 * 359.72858 * 22 21 20 24 24 C 1.38148 * 119.93950 * 179.74191 * 23 22 21 25 25 C 1.38264 * 120.05947 * 0.50627 * 24 23 22 26 26 C 1.38272 * 120.10886 * 359.76971 * 25 24 23 27 27 C 1.38145 * 120.05416 * 359.97438 * 26 25 24 28 28 O 1.33934 * 108.77251 * 0.02562 * 19 18 17 29 29 C 1.39523 * 120.32383 * 0.27787 * 12 11 10 30 30 C 1.36352 * 120.16753 * 359.43861 * 29 12 11 31 31 H 0.97001 * 120.00055 * 359.97438 * 1 2 3 32 32 H 1.08005 * 120.08436 * 359.97438 * 10 9 7 33 33 H 1.08010 * 119.91438 * 179.97438 * 11 10 9 34 34 H 0.97005 * 119.99714 * 215.31625 * 13 12 11 35 35 H 1.07996 * 126.64565 * 0.23699 * 17 16 14 36 36 H 1.08002 * 126.43672 * 179.97438 * 18 17 16 37 37 H 1.09003 * 109.47016 * 210.00262 * 20 19 18 38 38 H 1.09005 * 109.47227 * 330.00027 * 20 19 18 39 39 H 1.07999 * 120.03199 * 359.97438 * 23 22 21 40 40 H 1.08004 * 119.96902 * 180.27807 * 24 23 22 41 41 H 1.07991 * 119.94653 * 179.74589 * 25 24 23 42 42 H 1.08000 * 119.97258 * 179.97438 * 26 25 24 43 43 H 1.07996 * 120.02702 * 179.97438 * 27 26 25 44 44 H 1.08003 * 119.91205 * 179.70742 * 29 12 11 45 45 H 1.07995 * 120.08917 * 180.25364 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2124 6 1 1.8840 2.3964 1.2126 7 6 2.0083 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0729 9 6 1.3058 -2.4320 0.0936 10 6 1.8651 -3.5185 0.7948 11 6 1.1808 -4.6946 0.8811 12 6 -0.0705 -4.8237 0.2777 13 7 -0.7629 -6.0264 0.3705 14 6 -0.6811 -6.7661 1.4941 15 8 0.0590 -6.4218 2.3969 16 6 -1.4835 -7.9855 1.6290 17 6 -1.4965 -8.8226 2.7083 18 6 -2.4009 -9.8531 2.4087 19 6 -2.8946 -9.6031 1.1758 20 6 -3.9039 -10.4516 0.4461 21 8 -5.2226 -10.0005 0.7615 22 6 -6.2570 -10.6637 0.1809 23 6 -6.0077 -11.7232 -0.6793 24 6 -7.0611 -12.3991 -1.2640 25 6 -8.3626 -12.0138 -1.0009 26 6 -8.6136 -10.9545 -0.1484 27 6 -7.5638 -10.2787 0.4430 28 8 -2.3393 -8.4771 0.7092 29 6 -0.6285 -3.7538 -0.4228 30 6 0.0415 -2.5696 -0.5127 31 1 -0.4850 0.8400 0.0004 32 1 2.8339 -3.4202 1.2620 33 1 1.6086 -5.5285 1.4180 34 1 -1.3045 -6.3329 -0.3736 35 1 -0.9251 -8.7106 3.6178 36 1 -2.6546 -10.6888 3.0441 37 1 -3.7390 -10.3692 -0.6283 38 1 -3.7929 -11.4920 0.7519 39 1 -4.9911 -12.0217 -0.8886 40 1 -6.8677 -13.2269 -1.9302 41 1 -9.1846 -12.5409 -1.4622 42 1 -9.6311 -10.6551 0.0553 43 1 -7.7603 -9.4511 1.1084 44 1 -1.5955 -3.8625 -0.8914 45 1 -0.3934 -1.7410 -1.0518 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008126570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:43 Heat of formation + Delta-G solvation = -0.696618 kcal Electronic energy + Delta-G solvation = -29434.387792 eV Core-core repulsion = 25156.011686 eV Total energy + Delta-G solvation = -4278.376106 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.130 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.90215 -40.48972 -39.58363 -37.83793 -37.27420 -34.63408 -33.43242 -32.92712 -31.97576 -31.27980 -30.03257 -29.62775 -29.00656 -27.16301 -25.02900 -23.27559 -22.77259 -22.37809 -21.72136 -21.28872 -20.66766 -19.84688 -18.80440 -18.23699 -17.34345 -16.87189 -16.55750 -16.36728 -16.23055 -16.19430 -15.33492 -15.20046 -14.75459 -14.43124 -14.34287 -13.91392 -13.84178 -13.61063 -13.37031 -13.18020 -13.08910 -13.00996 -12.67979 -12.46068 -12.18102 -12.01560 -11.75293 -11.51388 -11.42265 -11.29700 -11.20624 -11.03566 -10.79097 -10.21880 -10.19589 -9.63521 -9.52248 -9.42883 -9.29962 -8.98718 -8.82356 -8.64186 -7.59485 -6.92437 -6.65805 -4.38250 0.81220 0.91442 1.02627 1.93719 2.33427 2.64663 3.05251 3.06528 3.07795 3.10893 3.14578 3.37542 3.44482 3.60962 3.95694 4.16177 4.37731 4.47386 4.53786 4.59611 4.66615 4.72064 4.75476 4.96156 4.97698 5.06430 5.22813 5.45602 5.55831 5.58376 5.60396 5.69086 5.86657 5.98167 6.12242 6.14482 6.16213 6.32761 6.38189 6.59027 6.67928 6.89987 6.94377 7.02054 7.13707 7.24779 7.59357 7.66863 7.77714 8.01915 8.16285 8.26545 8.50012 8.62308 8.88563 8.94489 10.25038 Molecular weight = 363.13amu Principal moments of inertia in cm(-1) A = 0.016153 B = 0.001584 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.043842 B =17674.319462 C =18905.774595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.102 3.898 10 C -0.205 4.205 11 C -0.083 4.083 12 C -0.006 4.006 13 N -0.632 5.632 14 C 0.581 3.419 15 O -0.507 6.507 16 C -0.041 4.041 17 C -0.135 4.135 18 C -0.180 4.180 19 C -0.010 4.010 20 C 0.144 3.856 21 O -0.309 6.309 22 C 0.131 3.869 23 C -0.211 4.211 24 C -0.080 4.080 25 C -0.159 4.159 26 C -0.080 4.080 27 C -0.150 4.150 28 O -0.155 6.155 29 C -0.115 4.115 30 C -0.142 4.142 31 H 0.278 0.722 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.401 0.599 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.093 0.907 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.266 -23.315 -1.844 27.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.147 4.147 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.099 3.901 10 C -0.225 4.225 11 C -0.102 4.102 12 C -0.098 4.098 13 N -0.274 5.274 14 C 0.367 3.633 15 O -0.385 6.385 16 C -0.094 4.094 17 C -0.156 4.156 18 C -0.199 4.199 19 C -0.062 4.062 20 C 0.069 3.931 21 O -0.223 6.223 22 C 0.086 3.914 23 C -0.229 4.229 24 C -0.098 4.098 25 C -0.178 4.178 26 C -0.098 4.098 27 C -0.168 4.168 28 O -0.051 6.051 29 C -0.135 4.135 30 C -0.161 4.161 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.235 0.765 35 H 0.182 0.818 36 H 0.176 0.824 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.111 0.889 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.989 -22.577 -1.363 26.595 hybrid contribution 0.039 0.377 -0.197 0.428 sum -13.951 -22.200 -1.561 26.266 Atomic orbital electron populations 1.69768 1.07330 1.28752 1.37747 1.25910 0.94957 1.01283 0.92502 0.86127 0.80598 0.80718 0.78431 1.18526 1.19964 1.19939 1.19563 0.94853 0.90176 1.44266 0.90417 1.17766 0.92246 0.92045 0.88025 1.20802 1.01308 0.94829 1.05593 1.20406 0.92624 0.97912 0.99291 1.17247 0.94432 0.85553 1.12529 1.42866 1.47832 1.21083 1.15587 1.16575 0.82187 0.81299 0.83268 1.90885 1.38238 1.69056 1.40316 1.22551 0.97995 0.98608 0.90297 1.21962 1.00370 0.93654 0.99605 1.21626 1.00458 1.02099 0.95716 1.21866 0.99612 0.88986 0.95692 1.20886 0.77772 0.95129 0.99323 1.86175 1.13201 1.56249 1.66640 1.19011 0.87795 0.91680 0.92900 1.21290 1.00460 0.99002 1.02192 1.20970 0.92304 0.98579 0.97967 1.21103 0.96879 0.98949 1.00837 1.21011 0.98615 0.94745 0.95444 1.20517 0.89454 1.02864 1.03998 1.84011 1.45807 1.33481 1.41803 1.20327 0.98366 0.93000 1.01816 1.21198 0.97278 0.95524 1.02146 0.91086 0.88391 0.87373 0.76474 0.81795 0.82394 0.89775 0.88372 0.85327 0.85685 0.85853 0.85240 0.85003 0.88912 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.97 10.59 55.55 0.59 -20.38 16 2 C 0.07 1.73 5.42 -17.33 -0.09 1.64 16 3 Si 0.92 18.89 29.56 -169.99 -5.03 13.87 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.46 -12.13 9.02 -37.86 -0.34 -12.48 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.56 16 9 C 0.10 2.72 5.55 -106.80 -0.59 2.12 16 10 C -0.21 -5.17 9.74 -39.26 -0.38 -5.55 16 11 C -0.08 -1.98 8.61 -39.78 -0.34 -2.32 16 12 C -0.01 -0.12 6.30 -83.61 -0.53 -0.65 16 13 N -0.63 -11.80 5.29 -10.95 -0.06 -11.86 16 14 C 0.58 10.87 7.61 -12.89 -0.10 10.77 16 15 O -0.51 -11.09 14.28 5.18 0.07 -11.01 16 16 C -0.04 -0.63 7.13 -36.81 -0.26 -0.89 16 17 C -0.14 -1.78 10.62 -39.38 -0.42 -2.19 16 18 C -0.18 -1.90 10.77 -39.89 -0.43 -2.33 16 19 C -0.01 -0.11 6.94 -35.41 -0.25 -0.35 16 20 C 0.14 1.16 5.27 36.01 0.19 1.35 16 21 O -0.31 -3.19 10.12 -19.43 -0.20 -3.39 16 22 C 0.13 1.20 6.69 -39.22 -0.26 0.94 16 23 C -0.21 -1.55 9.04 -39.43 -0.36 -1.91 16 24 C -0.08 -0.52 10.04 -39.60 -0.40 -0.92 16 25 C -0.16 -1.02 10.04 -39.56 -0.40 -1.42 16 26 C -0.08 -0.55 10.04 -39.60 -0.40 -0.95 16 27 C -0.15 -1.28 9.99 -39.43 -0.39 -1.68 16 28 O -0.16 -2.11 10.40 4.99 0.05 -2.06 16 29 C -0.11 -2.65 9.90 -39.78 -0.39 -3.04 16 30 C -0.14 -3.63 8.61 -39.26 -0.34 -3.97 16 31 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 32 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 33 H 0.11 2.53 6.22 -52.48 -0.33 2.20 16 34 H 0.40 6.24 8.57 -40.82 -0.35 5.89 16 35 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.08 0.57 7.65 -51.93 -0.40 0.17 16 38 H 0.10 0.51 7.68 -51.93 -0.40 0.11 16 39 H 0.13 0.69 6.30 -52.49 -0.33 0.35 16 40 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 41 H 0.12 0.54 8.06 -52.49 -0.42 0.11 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 45 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -31.37 392.06 -10.19 -41.56 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.05 Total: 11.21 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -6.48 Total: -23.84 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.53 Total: -32.24 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.07 Total: -16.46 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.37 -10.19 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.864 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds