Wall clock time and date at job start Tue Mar 31 2020 06:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46899 * 111.00186 * 2 1 4 4 C 1.53010 * 109.46625 * 66.05020 * 3 2 1 5 5 C 1.50698 * 109.46779 * 180.02562 * 4 3 2 6 6 H 1.07996 * 120.00383 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99862 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00022 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99792 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47384 * 89.99595 * 9 7 5 11 11 H 1.48505 * 109.46884 * 209.99688 * 9 7 5 12 12 H 1.48498 * 109.47115 * 329.99611 * 9 7 5 13 13 C 1.46904 * 111.00160 * 236.05177 * 2 1 3 14 14 C 1.50697 * 109.46956 * 293.95469 * 13 2 1 15 15 O 1.21290 * 120.00090 * 359.97438 * 14 13 2 16 16 N 1.34778 * 120.00220 * 180.02562 * 14 13 2 17 17 C 1.39974 * 120.00184 * 184.62321 * 16 14 13 18 18 C 1.38885 * 120.05683 * 324.88819 * 17 16 14 19 19 C 1.38085 * 119.94172 * 180.02562 * 18 17 16 20 20 C 1.38403 * 120.05827 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 119.94170 * 180.27373 * 20 19 18 22 22 C 1.38359 * 120.11671 * 0.02562 * 20 19 18 23 23 C 1.50703 * 119.97411 * 179.97438 * 22 20 19 24 24 F 1.39894 * 109.47115 * 180.02562 * 23 22 20 25 25 F 1.39905 * 109.46954 * 299.99884 * 23 22 20 26 26 F 1.39899 * 109.46891 * 59.99566 * 23 22 20 27 27 C 1.38129 * 120.05637 * 359.97438 * 22 20 19 28 28 H 1.09005 * 109.47081 * 183.94928 * 1 2 3 29 29 H 1.09005 * 109.47225 * 303.94779 * 1 2 3 30 30 H 1.09000 * 109.47646 * 63.95312 * 1 2 3 31 31 H 1.09003 * 109.47518 * 186.04421 * 3 2 1 32 32 H 1.08997 * 109.47240 * 306.05205 * 3 2 1 33 33 H 1.09003 * 109.46683 * 299.99912 * 4 3 2 34 34 H 1.08997 * 109.47160 * 60.00137 * 4 3 2 35 35 H 0.97005 * 119.99700 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47253 * 173.95049 * 13 2 1 37 37 H 1.08999 * 109.47198 * 53.95238 * 13 2 1 38 38 H 0.97004 * 119.99781 * 4.62008 * 16 14 13 39 39 H 1.08004 * 120.02846 * 0.04938 * 18 17 16 40 40 H 1.08006 * 119.96842 * 180.02562 * 19 18 17 41 41 H 1.07999 * 120.03049 * 180.02562 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0573 1.3184 5 6 2.1710 3.4644 1.3182 6 1 2.7190 3.8325 0.4635 7 6 1.9649 4.2819 2.4093 8 7 2.4362 5.5097 2.4093 9 14 1.0176 3.6449 3.8879 10 1 1.9614 3.0185 4.8482 11 1 0.3150 4.7738 4.5493 12 1 0.0233 2.6362 3.4417 13 6 1.9954 -0.7659 -1.1377 14 6 1.6369 -2.2203 -0.9731 15 8 1.0054 -2.5832 -0.0032 16 7 2.0188 -3.1180 -1.9030 17 6 1.6042 -4.4510 -1.8009 18 6 1.4715 -5.0445 -0.5523 19 6 1.0629 -6.3599 -0.4544 20 6 0.7860 -7.0869 -1.5991 21 17 0.2656 -8.7381 -1.4722 22 6 0.9184 -6.4983 -2.8443 23 6 0.6166 -7.2930 -4.0886 24 9 0.8218 -6.4903 -5.2158 25 9 1.4633 -8.4052 -4.1484 26 9 -0.7147 -7.7217 -4.0567 27 6 1.3269 -5.1828 -2.9478 28 1 -0.3633 -1.0253 0.0708 29 1 -0.3634 0.5739 0.8525 30 1 -0.3634 0.4512 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5610 1.9274 -0.8308 33 1 0.5471 2.0843 1.4266 34 1 2.0658 1.5014 2.1492 35 1 2.2915 6.0846 3.1771 36 1 3.0797 -0.6609 -1.1757 37 1 1.5611 -0.3871 -2.0629 38 1 2.5811 -2.8402 -2.6431 39 1 1.6875 -4.4777 0.3413 40 1 0.9592 -6.8218 0.5164 41 1 1.4296 -4.7237 -3.9199 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008944650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:25 Heat of formation + Delta-G solvation = -148.774523 kcal Electronic energy + Delta-G solvation = -29502.538182 eV Core-core repulsion = 24608.025435 eV Total energy + Delta-G solvation = -4894.512746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.091 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.56612 -48.10308 -47.99347 -41.10531 -39.37329 -37.28216 -36.76598 -35.13182 -33.05580 -32.56072 -30.97564 -30.11459 -27.87046 -26.58808 -25.97853 -23.64823 -23.24585 -22.25214 -20.72591 -19.98973 -19.17625 -18.88903 -18.85149 -17.59244 -17.28382 -16.94033 -16.56951 -16.17760 -15.49661 -15.05395 -14.99325 -14.90759 -14.79106 -14.50941 -14.46338 -14.32136 -14.16730 -14.12524 -14.01377 -13.82643 -13.37245 -13.05047 -12.93494 -12.71520 -12.53801 -12.47883 -12.15398 -11.80079 -11.47677 -11.38505 -11.30880 -10.97179 -10.68650 -10.33895 -10.07396 -9.87385 -9.78307 -9.66126 -9.24524 -8.71558 -8.55781 -8.01988 -6.07721 -4.06343 0.23048 0.45529 1.44082 2.10957 2.22600 2.50934 2.88387 3.22061 3.31825 3.38951 3.44181 3.54209 3.95785 4.08631 4.21982 4.39954 4.44088 4.49058 4.59380 4.78665 5.02013 5.10507 5.11117 5.20175 5.27009 5.46998 5.57091 5.65542 5.73657 5.78189 6.05221 6.19654 6.22675 6.38234 6.65698 6.82127 7.06071 7.18526 7.44469 7.50740 7.77148 7.81704 8.48021 8.95411 9.54742 11.05337 Molecular weight = 364.09amu Principal moments of inertia in cm(-1) A = 0.024141 B = 0.001732 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.573495 B =16157.779444 C =16848.613367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.529 5.529 3 C 0.071 3.929 4 C -0.007 4.007 5 C -0.523 4.523 6 H 0.071 0.929 7 C 0.068 3.932 8 N -0.903 5.903 9 Si 0.881 3.119 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.038 3.962 14 C 0.517 3.483 15 O -0.493 6.493 16 N -0.680 5.680 17 C 0.161 3.839 18 C -0.078 4.078 19 C -0.089 4.089 20 C -0.013 4.013 21 Cl -0.048 7.048 22 C -0.160 4.160 23 C 0.512 3.488 24 F -0.175 7.175 25 F -0.170 7.170 26 F -0.169 7.169 27 C -0.093 4.093 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.017 0.983 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.018 0.982 34 H 0.022 0.978 35 H 0.263 0.737 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.416 0.584 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 -28.839 -14.403 32.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.253 5.253 3 C -0.055 4.055 4 C -0.045 4.045 5 C -0.561 4.561 6 H 0.089 0.911 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.709 3.291 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.189 1.189 13 C -0.094 4.094 14 C 0.305 3.695 15 O -0.365 6.365 16 N -0.327 5.327 17 C 0.065 3.935 18 C -0.099 4.099 19 C -0.108 4.108 20 C -0.041 4.041 21 Cl -0.019 7.019 22 C -0.163 4.163 23 C 0.457 3.543 24 F -0.156 7.156 25 F -0.151 7.151 26 F -0.150 7.150 27 C -0.114 4.114 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.036 0.964 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.083 0.917 38 H 0.252 0.748 39 H 0.179 0.821 40 H 0.168 0.832 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.227 -29.213 -13.158 32.117 hybrid contribution -0.520 0.105 -0.586 0.791 sum -2.748 -29.108 -13.744 32.307 Atomic orbital electron populations 1.22573 0.87073 1.02661 1.00731 1.61843 1.08600 1.15834 1.39040 1.22215 0.99104 0.84178 1.00011 1.19576 0.96780 0.95550 0.92593 1.21047 1.35735 0.95459 1.03880 0.91109 1.24994 0.95263 0.94679 0.98428 1.69911 1.46161 1.07174 1.30919 0.86752 0.80809 0.78564 0.83018 1.20196 1.21487 1.18917 1.21970 1.02699 0.89368 0.95338 1.21186 0.78340 0.88325 0.81661 1.90685 1.37261 1.80005 1.28514 1.43698 1.52648 1.06308 1.30016 1.17648 0.97959 0.84600 0.93280 1.21648 0.96419 0.93493 0.98319 1.21047 0.98562 0.93562 0.97627 1.20603 1.02253 0.87618 0.93586 1.98419 1.88629 1.16452 1.98387 1.19533 1.09634 0.95698 0.91407 1.18043 0.74968 0.77999 0.83256 1.93176 1.94745 1.73292 1.54414 1.93247 1.70914 1.54300 1.96638 1.93251 1.34850 1.90345 1.96587 1.20681 0.99053 0.92278 0.99373 0.90626 0.90422 0.96437 0.91280 0.95184 0.96412 0.95999 0.92691 0.87352 0.91674 0.74785 0.82078 0.83221 0.83160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.01 60.06 0.54 0.82 16 2 N -0.53 -8.50 4.50 -244.37 -1.10 -9.60 16 3 C 0.07 1.33 4.90 -3.82 -0.02 1.31 16 4 C -0.01 -0.17 3.97 -27.88 -0.11 -0.28 16 5 C -0.52 -14.54 9.66 -34.44 -0.33 -14.88 16 6 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 13 C 0.04 0.42 5.45 -4.97 -0.03 0.39 16 14 C 0.52 5.62 7.40 -10.99 -0.08 5.54 16 15 O -0.49 -7.06 11.75 5.55 0.07 -7.00 16 16 N -0.68 -5.01 5.34 -9.85 -0.05 -5.06 16 17 C 0.16 1.33 6.30 -83.67 -0.53 0.80 16 18 C -0.08 -0.71 8.70 -39.40 -0.34 -1.05 16 19 C -0.09 -0.71 9.82 -39.58 -0.39 -1.10 16 20 C -0.01 -0.11 6.25 -39.48 -0.25 -0.36 16 21 Cl -0.05 -0.41 26.58 -51.86 -1.38 -1.79 16 22 C -0.16 -1.35 5.37 -104.62 -0.56 -1.91 16 23 C 0.51 4.45 2.86 36.01 0.10 4.55 16 24 F -0.17 -1.44 15.97 2.25 0.04 -1.40 16 25 F -0.17 -1.55 16.39 2.25 0.04 -1.51 16 26 F -0.17 -1.61 16.37 2.25 0.04 -1.58 16 27 C -0.09 -0.68 9.35 -39.40 -0.37 -1.05 16 28 H 0.08 1.17 5.88 -51.93 -0.31 0.86 16 29 H 0.08 1.36 6.30 -51.93 -0.33 1.03 16 30 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 32 H 0.03 0.56 8.12 -51.93 -0.42 0.13 16 33 H 0.02 0.42 5.53 -51.93 -0.29 0.13 16 34 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 36 H 0.11 1.00 7.93 -51.93 -0.41 0.59 16 37 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 38 H 0.42 1.63 8.82 -40.82 -0.36 1.27 16 39 H 0.16 1.66 6.22 -52.48 -0.33 1.33 16 40 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.15 0.79 7.15 -52.49 -0.38 0.41 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -32.58 365.68 -7.67 -40.25 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -4.47 Total: -2.82 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.46 Total: -5.36 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.38 Total: -41.37 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: 0.07 Total: -7.00 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.11 Total: -4.49 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.38 Total: -1.79 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.58 -7.67 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008944650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.522 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds