Wall clock time and date at job start Tue Mar 31 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86800 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47216 * 240.00436 * 3 2 1 5 5 H 1.48503 * 109.46667 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47130 * 119.99906 * 3 2 1 7 7 C 1.38621 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 179.97438 * 7 2 1 9 9 O 1.34801 * 120.00160 * 0.27883 * 7 2 1 10 10 C 1.35633 * 116.99963 * 174.66108 * 9 7 2 11 11 C 1.38701 * 120.15951 * 5.59199 * 10 9 7 12 12 C 1.38129 * 120.08641 * 179.70288 * 11 10 9 13 13 C 1.38511 * 120.40053 * 0.59667 * 12 11 10 14 14 C 1.37910 * 120.31193 * 359.68288 * 13 12 11 15 15 C 1.39656 * 119.90554 * 0.02562 * 14 13 12 16 16 C 1.47343 * 120.19692 * 180.02562 * 15 14 13 17 17 N 1.29818 * 120.00102 * 179.97438 * 16 15 14 18 18 N 1.40097 * 119.99960 * 180.02562 * 17 16 15 19 19 C 1.46500 * 120.00029 * 179.97438 * 18 17 16 20 20 C 1.50705 * 109.47209 * 180.02562 * 19 18 17 21 21 C 1.38325 * 120.01062 * 269.72320 * 20 19 18 22 22 Cl 1.73608 * 120.00749 * 359.97438 * 21 20 19 23 23 C 1.38358 * 119.98883 * 179.74944 * 21 20 19 24 24 C 1.38227 * 120.01111 * 0.54592 * 23 21 20 25 25 C 1.38226 * 120.02424 * 359.70243 * 24 23 21 26 26 C 1.38329 * 120.01753 * 89.99431 * 20 19 18 27 27 Cl 1.73611 * 120.00377 * 0.02562 * 26 20 19 28 28 H 0.97004 * 120.00225 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.95422 * 359.97438 * 11 10 9 30 30 H 1.08003 * 119.80246 * 180.32292 * 12 11 10 31 31 H 1.08005 * 119.84534 * 179.69796 * 13 12 11 32 32 H 1.08000 * 120.04839 * 180.02562 * 14 13 12 33 33 H 1.07997 * 119.99998 * 359.97438 * 16 15 14 34 34 H 0.97001 * 120.00229 * 359.97438 * 18 17 16 35 35 H 1.09003 * 109.46801 * 299.99488 * 19 18 17 36 36 H 1.08994 * 109.47552 * 59.99400 * 19 18 17 37 37 H 1.07996 * 119.99967 * 180.29765 * 23 21 20 38 38 H 1.08002 * 119.99024 * 179.72857 * 24 23 21 39 39 H 1.07995 * 119.98832 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1036 1.6963 1.2126 7 6 2.0088 -1.2005 0.0005 8 1 3.0887 -1.2006 0.0001 9 8 1.3348 -2.3679 -0.0046 10 6 2.0694 -3.5026 -0.1162 11 6 3.4549 -3.4399 -0.1021 12 6 4.2015 -4.5971 -0.2097 13 6 3.5754 -5.8252 -0.3447 14 6 2.1989 -5.9061 -0.3665 15 6 1.4313 -4.7449 -0.2526 16 6 -0.0399 -4.8239 -0.2745 17 7 -0.7497 -3.7422 -0.1678 18 7 -2.1485 -3.8174 -0.1882 19 6 -2.9495 -2.5968 -0.0672 20 6 -4.4138 -2.9499 -0.1167 21 6 -5.0772 -2.9817 -1.3300 22 17 -4.2234 -2.6142 -2.7963 23 6 -6.4203 -3.3110 -1.3754 24 6 -7.1018 -3.5971 -0.2074 25 6 -6.4406 -3.5604 1.0059 26 6 -5.0962 -3.2368 1.0518 27 17 -4.2662 -3.1896 2.5759 28 1 -0.4851 0.8401 -0.0004 29 1 3.9506 -2.4856 -0.0024 30 1 5.2801 -4.5435 -0.1929 31 1 4.1681 -6.7238 -0.4330 32 1 1.7151 -6.8659 -0.4715 33 1 -0.5277 -5.7817 -0.3793 34 1 -2.5866 -4.6777 -0.2823 35 1 -2.7259 -2.1080 0.8810 36 1 -2.7101 -1.9221 -0.8891 37 1 -6.9372 -3.3405 -2.3232 38 1 -8.1513 -3.8498 -0.2428 39 1 -6.9738 -3.7837 1.9181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009195018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:28 Heat of formation + Delta-G solvation = 68.624819 kcal Electronic energy + Delta-G solvation = -26708.799431 eV Core-core repulsion = 22670.446638 eV Total energy + Delta-G solvation = -4038.352793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 364.049 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.79012 -38.86463 -36.78057 -36.32269 -36.26652 -35.90522 -33.41585 -32.14381 -30.87230 -30.82173 -29.14495 -28.26994 -25.26297 -25.07210 -23.00786 -22.43311 -21.53443 -21.33689 -19.66227 -17.79270 -17.54171 -16.79801 -16.29501 -16.03518 -15.71298 -15.07116 -14.59738 -14.48621 -14.35885 -13.99997 -13.69101 -13.55081 -13.39576 -13.09375 -13.04823 -12.44478 -12.36143 -12.28434 -12.00273 -11.95020 -11.57158 -11.43600 -11.20666 -11.03053 -10.80632 -10.79468 -10.69134 -10.59981 -10.50739 -10.36996 -9.35252 -9.10682 -8.90354 -8.81231 -8.71817 -8.33436 -7.37317 -6.57800 -6.30224 -3.86186 0.76859 0.77551 1.80080 1.94725 2.20995 2.53157 3.11753 3.19856 3.21032 3.22346 3.56592 3.79941 4.05850 4.45085 4.62148 4.67709 4.80858 4.94266 5.13714 5.24526 5.32209 5.39232 5.61594 5.65535 5.74471 5.81753 5.84920 5.91795 6.05969 6.21729 6.32717 6.36757 6.41275 6.49093 6.79956 6.92145 7.01691 7.23592 7.44114 7.48925 7.53603 7.82378 7.94791 8.10642 9.12767 9.35702 9.88697 10.84081 Molecular weight = 364.05amu Principal moments of inertia in cm(-1) A = 0.008831 B = 0.003322 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.736439 B = 8426.995790 C = 9636.822639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.047 3.953 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.396 4.396 8 H 0.087 0.913 9 O -0.129 6.129 10 C 0.165 3.835 11 C -0.238 4.238 12 C -0.071 4.071 13 C -0.221 4.221 14 C -0.058 4.058 15 C -0.116 4.116 16 C 0.043 3.957 17 N -0.158 5.158 18 N -0.659 5.659 19 C 0.202 3.798 20 C -0.083 4.083 21 C -0.010 4.010 22 Cl -0.042 7.042 23 C -0.113 4.113 24 C -0.095 4.095 25 C -0.113 4.113 26 C -0.010 4.010 27 Cl -0.043 7.043 28 H 0.266 0.734 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.359 0.641 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.293 -7.672 -0.604 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.160 4.160 3 Si 0.757 3.243 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.473 4.473 8 H 0.104 0.896 9 O -0.028 6.028 10 C 0.107 3.893 11 C -0.257 4.257 12 C -0.090 4.090 13 C -0.240 4.240 14 C -0.079 4.079 15 C -0.120 4.120 16 C -0.167 4.167 17 N 0.035 4.965 18 N -0.397 5.397 19 C 0.078 3.922 20 C -0.086 4.086 21 C -0.038 4.038 22 Cl -0.013 7.013 23 C -0.132 4.132 24 C -0.113 4.113 25 C -0.132 4.132 26 C -0.038 4.038 27 Cl -0.014 7.014 28 H 0.076 0.924 29 H 0.144 0.856 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.196 0.804 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.698 -6.170 -0.447 15.030 hybrid contribution 0.299 -0.360 -0.136 0.488 sum -13.399 -6.531 -0.583 14.917 Atomic orbital electron populations 1.70103 1.05566 1.26994 1.44358 1.25173 0.95740 0.98341 0.96701 0.85935 0.78849 0.80490 0.79030 1.19714 1.20441 1.19709 1.21317 0.91665 0.81524 1.52810 0.89572 1.84182 1.32844 1.10538 1.75190 1.19449 0.89829 0.87931 0.92071 1.21108 0.93757 0.98949 1.11908 1.20787 0.98314 0.92468 0.97436 1.20415 0.94090 0.96883 1.12628 1.20627 0.93406 0.95681 0.98167 1.17447 0.89647 0.91279 1.13659 1.23678 0.93178 0.93392 1.06439 1.75048 0.89340 1.25137 1.07019 1.47777 1.00087 1.06067 1.85769 1.19733 0.80945 0.87276 1.04256 1.19904 0.97960 1.00445 0.90313 1.20832 0.92921 1.02064 0.87977 1.98424 1.77113 1.92539 1.33218 1.21166 0.92270 0.99955 0.99825 1.21068 1.00249 0.98929 0.91089 1.21162 0.92360 1.00364 0.99336 1.20826 0.93000 1.02387 0.87588 1.98421 1.78350 1.96516 1.28105 0.92447 0.85650 0.87761 0.87710 0.87069 0.89164 0.80449 0.90307 0.90053 0.84324 0.84202 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.72 13.67 55.48 0.76 -22.96 16 2 C 0.05 1.27 5.49 -17.52 -0.10 1.17 16 3 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.40 -11.04 9.48 30.87 0.29 -10.75 16 8 H 0.09 2.25 5.21 -52.49 -0.27 1.97 16 9 O -0.13 -3.62 7.64 0.49 0.00 -3.62 16 10 C 0.17 4.08 6.66 -38.63 -0.26 3.82 16 11 C -0.24 -5.29 9.16 -39.45 -0.36 -5.65 16 12 C -0.07 -1.33 10.03 -39.52 -0.40 -1.73 16 13 C -0.22 -3.89 10.03 -39.60 -0.40 -4.29 16 14 C -0.06 -1.06 9.79 -39.17 -0.38 -1.44 16 15 C -0.12 -2.53 5.88 -104.88 -0.62 -3.15 16 16 C 0.04 0.90 10.75 -14.70 -0.16 0.74 16 17 N -0.16 -3.61 9.36 32.14 0.30 -3.31 16 18 N -0.66 -12.55 6.63 -11.65 -0.08 -12.63 16 19 C 0.20 3.74 6.01 -5.19 -0.03 3.71 16 20 C -0.08 -1.21 5.25 -104.55 -0.55 -1.76 16 21 C -0.01 -0.13 6.31 -39.51 -0.25 -0.38 16 22 Cl -0.04 -0.60 27.29 -51.86 -1.42 -2.01 16 23 C -0.11 -1.11 9.83 -39.54 -0.39 -1.49 16 24 C -0.09 -0.78 10.04 -39.59 -0.40 -1.18 16 25 C -0.11 -1.10 9.83 -39.54 -0.39 -1.49 16 26 C -0.01 -0.13 6.31 -39.51 -0.25 -0.38 16 27 Cl -0.04 -0.60 27.30 -51.86 -1.42 -2.02 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 30 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 32 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.09 1.56 8.02 -52.49 -0.42 1.14 16 34 H 0.36 6.01 8.42 -182.60 -1.54 4.47 16 35 H 0.08 1.63 6.90 -51.93 -0.36 1.27 16 36 H 0.08 1.70 6.89 -51.93 -0.36 1.34 16 37 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -30.96 371.36 -10.82 -41.78 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.92 Total: 7.83 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -4.63 Total: -24.25 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.98 Total: -38.90 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: 0.00 Total: -3.62 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -2.83 Total: -4.03 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.96 -10.82 -41.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009195018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.403 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds