Wall clock time and date at job start Tue Mar 31 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46503 * 119.99601 * 2 1 4 4 C 1.50691 * 109.47003 * 269.99448 * 3 2 1 5 5 H 1.08004 * 120.00320 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99900 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99930 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 119.99958 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46934 * 59.99972 * 8 6 4 10 10 H 1.48497 * 109.46934 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46926 * 300.00196 * 8 6 4 12 12 C 1.34770 * 119.99758 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99871 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00745 * 359.97438 * 12 2 1 15 15 O 1.42892 * 109.47517 * 179.97438 * 14 12 2 16 16 C 1.35671 * 116.99943 * 180.02562 * 15 14 12 17 17 C 1.38963 * 119.66117 * 0.02562 * 16 15 14 18 18 C 1.38334 * 120.06343 * 180.15625 * 17 16 15 19 19 O 1.35617 * 120.24390 * 180.08195 * 18 17 16 20 20 C 1.40386 * 119.50899 * 0.05871 * 18 17 16 21 21 C 1.40718 * 120.25391 * 359.61560 * 20 18 17 22 22 C 1.38379 * 119.28174 * 0.47551 * 21 20 18 23 23 O 1.35374 * 120.76517 * 180.77777 * 21 20 18 24 24 C 1.42753 * 118.67990 * 337.50093 * 23 21 20 25 25 C 1.52997 * 109.49688 * 292.56856 * 24 23 21 26 26 C 1.53003 * 109.51355 * 172.49596 * 24 23 21 27 27 C 1.53566 * 109.32659 * 52.52732 * 24 23 21 28 28 C 1.46699 * 120.67851 * 179.53601 * 20 18 17 29 29 O 1.21375 * 121.71348 * 347.79346 * 28 20 18 30 30 H 1.09004 * 109.46923 * 270.00037 * 1 2 3 31 31 H 1.08994 * 109.46999 * 29.99783 * 1 2 3 32 32 H 1.08997 * 109.46636 * 150.00071 * 1 2 3 33 33 H 1.09002 * 109.47283 * 30.00489 * 3 2 1 34 34 H 1.09007 * 109.46636 * 149.99861 * 3 2 1 35 35 H 0.97000 * 119.99647 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.46742 * 59.99741 * 14 12 2 37 37 H 1.09002 * 109.46847 * 300.00769 * 14 12 2 38 38 H 1.07997 * 119.96730 * 0.11278 * 17 16 15 39 39 H 0.96704 * 113.99556 * 269.97376 * 19 18 17 40 40 H 1.08001 * 119.89551 * 179.72974 * 22 21 20 41 41 H 1.09002 * 109.47153 * 179.85359 * 25 24 23 42 42 H 1.09001 * 109.46832 * 59.85550 * 25 24 23 43 43 H 1.09004 * 109.47261 * 299.85532 * 25 24 23 44 44 H 1.09000 * 109.46436 * 180.02562 * 26 24 23 45 45 H 1.08996 * 109.47413 * 300.07254 * 26 24 23 46 46 H 1.08996 * 109.47363 * 60.07748 * 26 24 23 47 47 H 1.08999 * 109.90920 * 60.73427 * 27 24 23 48 48 H 1.08998 * 109.91105 * 181.80634 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0976 1.0961 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5550 3.6172 -0.6731 8 14 3.4378 3.4170 -3.4340 9 1 2.1400 3.5953 -4.1333 10 1 4.1813 4.7024 -3.4339 11 1 4.2395 2.3819 -4.1346 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3855 -2.4723 0.0017 15 8 2.3141 -3.5584 0.0015 16 6 1.7955 -4.8121 0.0019 17 6 0.4168 -4.9860 0.0020 18 6 -0.1209 -6.2606 0.0057 19 8 -1.4658 -6.4346 0.0041 20 6 0.7361 -7.3726 0.0106 21 6 2.1316 -7.1923 0.0035 22 6 2.6482 -5.9085 0.0018 23 8 2.9674 -8.2572 -0.0076 24 6 2.4829 -9.5133 0.4670 25 6 2.2254 -9.4254 1.9726 26 6 3.5234 -10.6002 0.1895 27 6 1.1740 -9.8598 -0.2575 28 6 0.1936 -8.7355 0.0248 29 8 -0.9789 -8.9532 0.2510 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3632 -0.8900 -0.5138 33 1 1.6084 2.0284 0.5139 34 1 3.1500 1.1384 0.5139 35 1 4.0318 4.4431 -0.8504 36 1 0.7585 -2.5306 -0.8880 37 1 0.7591 -2.5294 0.8919 38 1 -0.2355 -4.1253 -0.0001 39 1 -1.8572 -6.4823 0.8871 40 1 3.7177 -5.7586 0.0009 41 1 1.8530 -10.3840 2.3341 42 1 1.4849 -8.6502 2.1698 43 1 3.1547 -9.1794 2.4865 44 1 3.1525 -11.5590 0.5518 45 1 3.7066 -10.6625 -0.8831 46 1 4.4525 -10.3534 0.7031 47 1 1.3525 -9.9362 -1.3301 48 1 0.7787 -10.8025 0.1208 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009484689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:16 Heat of formation + Delta-G solvation = -154.143674 kcal Electronic energy + Delta-G solvation = -32556.429978 eV Core-core repulsion = 27964.090989 eV Total energy + Delta-G solvation = -4592.338989 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 363.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.75090 -40.24392 -39.14177 -38.75545 -37.98295 -36.07529 -34.94161 -34.28364 -32.70596 -31.14702 -30.25366 -29.11384 -28.43955 -27.91815 -27.26984 -25.77148 -23.93248 -23.22722 -22.58527 -21.89590 -19.76316 -19.12984 -18.86018 -17.72201 -17.36477 -17.03357 -16.82550 -16.71958 -16.23931 -15.94477 -15.70491 -15.36030 -15.18988 -15.10044 -14.76892 -14.71804 -14.35976 -14.23242 -13.89731 -13.62753 -13.42410 -13.10880 -12.83845 -12.76358 -12.69379 -12.60136 -12.31130 -12.26748 -12.00890 -11.94184 -11.78929 -11.49563 -11.36478 -11.25981 -11.19508 -10.95619 -10.65352 -10.62337 -10.20978 -9.92466 -9.71885 -9.08445 -8.77384 -8.58851 -8.47922 -7.80728 -6.09303 -4.14608 0.33974 0.89251 2.02167 2.25344 2.90681 3.16192 3.25661 3.29961 3.34606 3.38499 3.54663 3.71905 3.94810 3.98974 4.19836 4.21940 4.40829 4.47311 4.56277 4.68047 4.72302 4.84743 4.94184 4.97537 5.04695 5.05179 5.10184 5.14190 5.19318 5.25487 5.28678 5.39429 5.48392 5.54555 5.61137 5.72834 5.76458 5.77651 5.88418 5.98422 6.08112 6.83639 6.89945 7.04700 7.15941 7.30825 7.33060 7.40889 7.86046 8.15327 8.20857 8.78096 8.93006 9.50574 10.98819 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.001938 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.245499 B =14446.197323 C =15142.929178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.597 5.597 3 C 0.247 3.753 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.506 3.494 13 O -0.516 6.516 14 C 0.037 3.963 15 O -0.273 6.273 16 C 0.225 3.775 17 C -0.287 4.287 18 C 0.244 3.756 19 O -0.481 6.481 20 C -0.325 4.325 21 C 0.236 3.764 22 C -0.208 4.208 23 O -0.296 6.296 24 C 0.121 3.879 25 C -0.182 4.182 26 C -0.139 4.139 27 C -0.193 4.193 28 C 0.409 3.591 29 O -0.446 6.446 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.265 0.735 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.145 0.855 39 H 0.401 0.599 40 H 0.152 0.848 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.112 0.888 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 -28.000 5.547 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.331 5.331 3 C 0.128 3.872 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.290 3.710 13 O -0.391 6.391 14 C -0.041 4.041 15 O -0.183 6.183 16 C 0.176 3.824 17 C -0.306 4.306 18 C 0.197 3.803 19 O -0.293 6.293 20 C -0.327 4.327 21 C 0.188 3.812 22 C -0.227 4.227 23 O -0.210 6.210 24 C 0.084 3.916 25 C -0.240 4.240 26 C -0.196 4.196 27 C -0.231 4.231 28 C 0.288 3.712 29 O -0.322 6.322 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.163 0.837 39 H 0.261 0.739 40 H 0.169 0.831 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.130 0.870 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.064 -27.855 5.067 29.180 hybrid contribution -0.432 0.486 -0.577 0.869 sum -7.495 -27.369 4.489 28.730 Atomic orbital electron populations 1.21733 0.81157 1.02941 1.00769 1.48103 1.06316 1.07230 1.71464 1.19363 0.92637 0.77391 0.97762 1.21371 1.36961 1.06466 0.92141 0.92429 1.24940 0.95211 0.96333 0.97572 1.69917 1.38096 1.14368 1.30853 0.86533 0.78401 0.77871 0.84486 1.20215 1.21118 1.20102 1.19623 0.88160 0.84146 0.79060 1.90738 1.13335 1.86593 1.48419 1.22862 0.92081 0.85615 1.03538 1.86191 1.34906 1.11151 1.86014 1.18674 0.90617 0.84871 0.88248 1.21471 0.94362 0.98297 1.16471 1.17860 0.83064 0.89790 0.89548 1.84663 1.15889 1.94870 1.33866 1.20685 0.93214 0.95946 1.22896 1.18298 0.86840 0.86812 0.89219 1.19569 1.01440 0.87200 1.14481 1.85843 1.39622 1.16579 1.78909 1.21978 0.93624 0.82281 0.93721 1.22503 1.03625 1.03594 0.94244 1.21827 0.98280 0.95855 1.03666 1.23119 0.95686 1.00153 1.04109 1.21926 0.88412 0.88718 0.72173 1.90562 1.18199 1.86593 1.36813 0.93277 0.90146 0.92621 0.94561 0.93608 0.92557 0.88857 0.89048 0.83693 0.73950 0.83053 0.90265 0.91828 0.90410 0.89871 0.90945 0.90649 0.86981 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 10.24 59.85 0.61 1.72 16 2 N -0.60 -12.08 2.86 -182.95 -0.52 -12.60 16 3 C 0.25 6.29 5.16 -5.20 -0.03 6.26 16 4 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.51 10.26 7.75 -10.99 -0.09 10.18 16 13 O -0.52 -13.11 16.08 -14.36 -0.23 -13.34 16 14 C 0.04 0.53 3.76 36.01 0.14 0.67 16 15 O -0.27 -4.28 9.65 -38.63 -0.37 -4.65 16 16 C 0.22 2.91 6.68 -39.07 -0.26 2.65 16 17 C -0.29 -3.22 8.95 -39.28 -0.35 -3.57 16 18 C 0.24 2.76 6.71 -38.74 -0.26 2.50 16 19 O -0.48 -5.07 11.83 -39.12 -0.46 -5.53 16 20 C -0.32 -3.65 5.27 -104.74 -0.55 -4.20 16 21 C 0.24 2.62 6.00 -38.59 -0.23 2.39 16 22 C -0.21 -2.54 9.89 -39.29 -0.39 -2.93 16 23 O -0.30 -2.88 9.63 -17.81 -0.17 -3.05 16 24 C 0.12 0.83 1.11 -90.33 -0.10 0.73 16 25 C -0.18 -1.15 8.30 37.16 0.31 -0.84 16 26 C -0.14 -0.61 8.85 37.16 0.33 -0.28 16 27 C -0.19 -1.38 5.27 -27.04 -0.14 -1.52 16 28 C 0.41 4.33 5.85 -30.34 -0.18 4.15 16 29 O -0.45 -5.70 16.31 -15.09 -0.25 -5.95 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.06 0.61 6.44 -51.93 -0.33 0.28 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.09 1.12 6.89 -51.93 -0.36 0.76 16 37 H 0.09 0.99 7.61 -51.93 -0.40 0.60 16 38 H 0.15 1.36 6.24 -52.49 -0.33 1.04 16 39 H 0.40 2.56 9.06 45.56 0.41 2.97 16 40 H 0.15 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -36.64 400.70 -7.77 -44.41 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.91 Total: -0.95 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.61 Total: 4.45 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.21 Total: -38.08 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.48 Total: -32.52 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.64 -7.77 -44.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009484689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.731 kcal (2) G-P(sol) polarization free energy of solvation -36.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds