Wall clock time and date at job start Tue Mar 31 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46503 * 119.99601 * 2 1 4 4 C 1.50691 * 109.47003 * 269.99448 * 3 2 1 5 5 H 1.08004 * 120.00320 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99900 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99930 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 119.99958 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46934 * 59.99972 * 8 6 4 10 10 H 1.48497 * 109.46934 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46926 * 300.00196 * 8 6 4 12 12 C 1.34770 * 119.99758 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99871 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00745 * 359.97438 * 12 2 1 15 15 O 1.42892 * 109.47517 * 179.97438 * 14 12 2 16 16 C 1.35671 * 116.99943 * 180.02562 * 15 14 12 17 17 C 1.38963 * 119.66117 * 0.02562 * 16 15 14 18 18 C 1.38334 * 120.06343 * 180.15625 * 17 16 15 19 19 O 1.35617 * 120.24390 * 180.08195 * 18 17 16 20 20 C 1.40386 * 119.50899 * 0.05871 * 18 17 16 21 21 C 1.40718 * 120.25391 * 359.61560 * 20 18 17 22 22 C 1.38379 * 119.28174 * 0.47551 * 21 20 18 23 23 O 1.35374 * 120.76517 * 180.77777 * 21 20 18 24 24 C 1.42753 * 118.67990 * 337.50093 * 23 21 20 25 25 C 1.52997 * 109.49688 * 292.56856 * 24 23 21 26 26 C 1.53003 * 109.51355 * 172.49596 * 24 23 21 27 27 C 1.53566 * 109.32659 * 52.52732 * 24 23 21 28 28 C 1.46699 * 120.67851 * 179.53601 * 20 18 17 29 29 O 1.21375 * 121.71348 * 347.79346 * 28 20 18 30 30 H 1.09004 * 109.46923 * 270.00037 * 1 2 3 31 31 H 1.08994 * 109.46999 * 29.99783 * 1 2 3 32 32 H 1.08997 * 109.46636 * 150.00071 * 1 2 3 33 33 H 1.09002 * 109.47283 * 30.00489 * 3 2 1 34 34 H 1.09007 * 109.46636 * 149.99861 * 3 2 1 35 35 H 0.97000 * 119.99647 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.46742 * 59.99741 * 14 12 2 37 37 H 1.09002 * 109.46847 * 300.00769 * 14 12 2 38 38 H 1.07997 * 119.96730 * 0.11278 * 17 16 15 39 39 H 0.96704 * 113.99556 * 269.97376 * 19 18 17 40 40 H 1.08001 * 119.89551 * 179.72974 * 22 21 20 41 41 H 1.09002 * 109.47153 * 179.85359 * 25 24 23 42 42 H 1.09001 * 109.46832 * 59.85550 * 25 24 23 43 43 H 1.09004 * 109.47261 * 299.85532 * 25 24 23 44 44 H 1.09000 * 109.46436 * 180.02562 * 26 24 23 45 45 H 1.08996 * 109.47413 * 300.07254 * 26 24 23 46 46 H 1.08996 * 109.47363 * 60.07748 * 26 24 23 47 47 H 1.08999 * 109.90920 * 60.73427 * 27 24 23 48 48 H 1.08998 * 109.91105 * 181.80634 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0976 1.0961 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5550 3.6172 -0.6731 8 14 3.4378 3.4170 -3.4340 9 1 2.1400 3.5953 -4.1333 10 1 4.1813 4.7024 -3.4339 11 1 4.2395 2.3819 -4.1346 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3855 -2.4723 0.0017 15 8 2.3141 -3.5584 0.0015 16 6 1.7955 -4.8121 0.0019 17 6 0.4168 -4.9860 0.0020 18 6 -0.1209 -6.2606 0.0057 19 8 -1.4658 -6.4346 0.0041 20 6 0.7361 -7.3726 0.0106 21 6 2.1316 -7.1923 0.0035 22 6 2.6482 -5.9085 0.0018 23 8 2.9674 -8.2572 -0.0076 24 6 2.4829 -9.5133 0.4670 25 6 2.2254 -9.4254 1.9726 26 6 3.5234 -10.6002 0.1895 27 6 1.1740 -9.8598 -0.2575 28 6 0.1936 -8.7355 0.0248 29 8 -0.9789 -8.9532 0.2510 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3632 -0.8900 -0.5138 33 1 1.6084 2.0284 0.5139 34 1 3.1500 1.1384 0.5139 35 1 4.0318 4.4431 -0.8504 36 1 0.7585 -2.5306 -0.8880 37 1 0.7591 -2.5294 0.8919 38 1 -0.2355 -4.1253 -0.0001 39 1 -1.8572 -6.4823 0.8871 40 1 3.7177 -5.7586 0.0009 41 1 1.8530 -10.3840 2.3341 42 1 1.4849 -8.6502 2.1698 43 1 3.1547 -9.1794 2.4865 44 1 3.1525 -11.5590 0.5518 45 1 3.7066 -10.6625 -0.8831 46 1 4.4525 -10.3534 0.7031 47 1 1.3525 -9.9362 -1.3301 48 1 0.7787 -10.8025 0.1208 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009484689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:15 Heat of formation + Delta-G solvation = -179.001898 kcal Electronic energy + Delta-G solvation = -32557.507911 eV Core-core repulsion = 27964.090989 eV Total energy + Delta-G solvation = -4593.416922 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 363.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.52576 -41.35257 -40.24709 -39.80187 -38.94185 -36.92512 -36.61141 -34.95681 -34.76762 -32.01869 -31.25367 -30.47018 -29.20211 -28.67326 -28.33998 -27.27480 -25.15698 -24.36459 -23.82137 -22.61940 -20.72259 -20.31421 -19.82905 -18.73498 -18.48751 -18.34890 -18.15813 -17.63916 -17.47973 -17.10314 -16.89335 -16.59895 -16.16627 -15.94329 -15.84322 -15.78912 -15.45954 -15.41862 -14.74677 -14.69830 -14.34952 -14.23655 -13.96353 -13.82628 -13.64160 -13.49187 -13.27867 -13.16209 -13.11631 -12.95416 -12.84687 -12.76758 -12.70879 -12.54171 -12.20832 -12.16487 -12.10401 -11.92500 -11.74247 -11.44723 -10.73017 -10.70408 -10.65133 -9.64750 -9.51189 -9.46702 -8.23983 -6.38530 -0.52124 0.05265 1.19446 1.31254 1.36929 1.41113 1.48180 1.64242 1.97332 2.36299 2.41096 2.66872 2.84942 2.95152 3.06169 3.41764 3.45549 3.60368 3.66908 3.71823 3.80824 3.90680 3.94879 4.02039 4.12884 4.37754 4.40683 4.50908 4.59905 4.62989 4.70988 4.71485 4.75031 4.85532 4.87823 4.93619 4.95990 4.99802 5.06238 5.12192 5.16522 5.20522 5.29363 5.50914 5.77126 6.02867 6.04376 6.18020 6.37058 6.61376 6.64109 6.70891 7.22472 7.36853 8.83085 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.001938 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.245499 B =14446.197323 C =15142.929178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.602 5.602 3 C 0.259 3.741 4 C -0.545 4.545 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.927 5.927 8 Si 0.967 3.033 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.495 3.505 13 O -0.584 6.584 14 C 0.051 3.949 15 O -0.305 6.305 16 C 0.213 3.787 17 C -0.281 4.281 18 C 0.241 3.759 19 O -0.488 6.488 20 C -0.334 4.334 21 C 0.242 3.758 22 C -0.224 4.224 23 O -0.305 6.305 24 C 0.115 3.885 25 C -0.182 4.182 26 C -0.137 4.137 27 C -0.187 4.187 28 C 0.407 3.593 29 O -0.472 6.472 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.032 0.968 34 H -0.002 1.002 35 H 0.268 0.732 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.168 0.832 39 H 0.418 0.582 40 H 0.145 0.855 41 H 0.101 0.899 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.122 0.878 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.689 -30.301 4.805 32.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.335 5.335 3 C 0.138 3.862 4 C -0.584 4.584 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.566 5.566 8 Si 0.791 3.209 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.205 1.205 12 C 0.282 3.718 13 O -0.464 6.464 14 C -0.026 4.026 15 O -0.216 6.216 16 C 0.165 3.835 17 C -0.300 4.300 18 C 0.195 3.805 19 O -0.303 6.303 20 C -0.337 4.337 21 C 0.195 3.805 22 C -0.243 4.243 23 O -0.219 6.219 24 C 0.078 3.922 25 C -0.239 4.239 26 C -0.193 4.193 27 C -0.225 4.225 28 C 0.287 3.713 29 O -0.349 6.349 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.050 0.950 34 H 0.017 0.983 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.152 0.848 38 H 0.185 0.815 39 H 0.280 0.720 40 H 0.162 0.838 41 H 0.120 0.880 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.127 0.873 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.140 0.860 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.153 -30.182 4.340 31.837 hybrid contribution 0.175 1.097 -0.276 1.145 sum -8.978 -29.085 4.064 30.709 Atomic orbital electron populations 1.22105 0.77125 1.04628 1.03336 1.48084 1.08768 1.05680 1.70945 1.18823 0.91274 0.79920 0.96168 1.21674 1.37068 1.06615 0.93044 0.92710 1.25860 0.94887 0.96481 1.01965 1.70037 1.38745 1.14815 1.33051 0.85480 0.78896 0.77318 0.79201 1.18304 1.20351 1.20509 1.20694 0.87793 0.86054 0.77264 1.90697 1.16515 1.87799 1.51366 1.22798 0.90912 0.82024 1.06898 1.86136 1.36238 1.12288 1.86939 1.18731 0.91507 0.83760 0.89468 1.21583 0.93617 0.99074 1.15716 1.17962 0.83462 0.89907 0.89202 1.84621 1.15407 1.94819 1.35464 1.20934 0.93294 0.96781 1.22671 1.18232 0.86962 0.86868 0.88469 1.19659 1.01326 0.87930 1.15427 1.85854 1.39946 1.17270 1.78835 1.22324 0.94363 0.81562 0.93937 1.22530 1.03253 1.04184 0.93967 1.21891 0.97575 0.95895 1.03969 1.23168 0.94699 0.99715 1.04883 1.22342 0.88508 0.89306 0.71118 1.90548 1.19335 1.86937 1.38125 0.90210 0.91007 0.88429 0.95010 0.98343 0.92346 0.85784 0.84842 0.81455 0.71988 0.83757 0.88049 0.93669 0.90277 0.87292 0.90779 0.90685 0.86001 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.80 10.24 127.77 1.31 3.11 16 2 N -0.60 -24.35 2.86 -851.12 -2.43 -26.78 16 3 C 0.26 13.73 5.16 85.63 0.44 14.17 16 4 C -0.55 -31.12 9.39 25.60 0.24 -30.88 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.42 5.46 84.66 0.46 0.88 16 7 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 8 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 9 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 C 0.49 20.23 7.75 87.66 0.68 20.91 16 13 O -0.58 -31.23 16.08 16.00 0.26 -30.97 16 14 C 0.05 1.35 3.76 71.24 0.27 1.62 16 15 O -0.30 -9.47 9.65 -70.85 -0.68 -10.15 16 16 C 0.21 5.36 6.68 22.60 0.15 5.52 16 17 C -0.28 -5.70 8.95 22.47 0.20 -5.50 16 18 C 0.24 5.04 6.71 22.82 0.15 5.20 16 19 O -0.49 -9.29 11.83 -69.62 -0.82 -10.11 16 20 C -0.33 -7.14 5.27 -19.94 -0.10 -7.24 16 21 C 0.24 5.27 6.00 22.91 0.14 5.40 16 22 C -0.22 -5.54 9.89 22.46 0.22 -5.31 16 23 O -0.31 -5.68 9.63 -86.66 -0.83 -6.51 16 24 C 0.11 1.35 1.11 -10.60 -0.01 1.34 16 25 C -0.18 -1.97 8.30 71.98 0.60 -1.37 16 26 C -0.14 -0.84 8.85 71.98 0.64 -0.21 16 27 C -0.19 -2.23 5.27 30.40 0.16 -2.07 16 28 C 0.41 7.98 5.85 28.26 0.17 8.15 16 29 O -0.47 -11.38 16.31 16.34 0.27 -11.12 16 30 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 32 H 0.10 1.72 6.44 -2.39 -0.02 1.70 16 33 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 34 H 0.00 -0.10 7.42 -2.38 -0.02 -0.11 16 35 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.12 2.52 6.89 -2.39 -0.02 2.51 16 37 H 0.13 2.40 7.61 -2.39 -0.02 2.38 16 38 H 0.17 2.50 6.24 -2.91 -0.02 2.48 16 39 H 0.42 4.48 9.06 -74.05 -0.67 3.81 16 40 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.04 0.66 6.43 -2.39 -0.02 0.65 16 43 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -84.99 400.70 4.11 -80.88 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.34 Total: 9.77 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 5.71 Total: 13.71 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -2.15 Total: -82.30 kcal Atomic # 8 Polarization: -67.04 SS G_CDS: -1.82 Total: -68.86 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -84.99 4.11 -80.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009484689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.124 kcal (2) G-P(sol) polarization free energy of solvation -84.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds