Wall clock time and date at job start Tue Mar 31 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99798 * 2 1 4 4 H 1.48503 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47200 * 299.99925 * 3 2 1 6 6 H 1.48494 * 109.47213 * 59.99959 * 3 2 1 7 7 C 1.37878 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99875 * 359.97438 * 7 2 1 10 10 S 1.81002 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.76203 * 100.00018 * 180.02562 * 10 9 7 12 12 N 1.30864 * 118.61376 * 359.97438 * 11 10 9 13 13 C 1.35458 * 122.00502 * 180.02562 * 12 11 10 14 14 C 1.39779 * 121.41372 * 179.97438 * 13 12 11 15 15 C 1.37615 * 119.75543 * 180.02562 * 14 13 12 16 16 C 1.38876 * 120.80693 * 359.97438 * 15 14 13 17 17 C 1.37773 * 120.54245 * 0.02562 * 16 15 14 18 18 C 1.39283 * 119.61009 * 0.02562 * 17 16 15 19 19 C 1.46782 * 121.99770 * 180.02562 * 18 17 16 20 20 N 1.31456 * 134.36979 * 359.86568 * 19 18 17 21 21 C 1.33734 * 109.65607 * 180.08942 * 20 19 18 22 22 C 1.48417 * 125.36237 * 180.02562 * 21 20 19 23 23 C 1.39746 * 120.90078 * 359.75595 * 22 21 20 24 24 C 1.37992 * 119.01960 * 179.70487 * 23 22 21 25 25 N 1.31912 * 120.88203 * 0.57778 * 24 23 22 26 26 C 1.31917 * 122.00075 * 359.71117 * 25 24 23 27 27 C 1.37996 * 120.87990 * 359.97438 * 26 25 24 28 28 N 1.31756 * 109.27915 * 0.04472 * 21 20 19 29 29 N 1.36887 * 118.61405 * 180.02562 * 11 10 9 30 30 H 0.97002 * 120.00090 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46915 * 60.00391 * 9 7 2 32 32 H 1.08996 * 109.47436 * 300.00538 * 9 7 2 33 33 H 1.07997 * 120.12202 * 0.30482 * 14 13 12 34 34 H 1.07997 * 119.59434 * 179.97438 * 15 14 13 35 35 H 1.08004 * 119.72627 * 180.02562 * 16 15 14 36 36 H 1.07993 * 120.19068 * 179.97438 * 17 16 15 37 37 H 1.07998 * 120.48844 * 359.97438 * 23 22 21 38 38 H 1.08005 * 119.56271 * 180.29188 * 24 23 22 39 39 H 1.07997 * 119.56072 * 180.02562 * 26 25 24 40 40 H 1.07998 * 120.49017 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4274 -3.8748 -0.0005 11 6 1.3073 -5.2351 -0.0013 12 7 0.0221 -4.9886 -0.0012 13 6 -0.8993 -5.9816 -0.0012 14 6 -2.2693 -5.7042 -0.0005 15 6 -3.1758 -6.7396 -0.0001 16 6 -2.7468 -8.0604 -0.0008 17 6 -1.4020 -8.3598 -0.0015 18 6 -0.4671 -7.3274 -0.0009 19 6 0.9776 -7.5864 -0.0022 20 7 1.7167 -8.6735 -0.0017 21 6 3.0111 -8.3376 -0.0015 22 6 4.1466 -9.2933 -0.0015 23 6 3.9235 -10.6728 0.0033 24 6 5.0078 -11.5263 -0.0031 25 7 6.2400 -11.0555 -0.0023 26 6 6.4938 -9.7610 -0.0010 27 6 5.4678 -8.8382 -0.0009 28 7 3.1197 -7.0245 -0.0008 29 7 1.8183 -6.5050 -0.0010 30 1 -0.4850 0.8401 -0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 -2.6151 -4.6811 -0.0049 34 1 -4.2337 -6.5223 0.0009 35 1 -3.4735 -8.8595 -0.0009 36 1 -1.0748 -9.3890 -0.0017 37 1 2.9173 -11.0652 0.0076 38 1 4.8454 -12.5941 -0.0042 39 1 7.5181 -9.4189 -0.0007 40 1 5.6828 -7.7798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009938018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:49 Heat of formation + Delta-G solvation = 176.466129 kcal Electronic energy + Delta-G solvation = -27617.362340 eV Core-core repulsion = 23718.173866 eV Total energy + Delta-G solvation = -3899.188474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.085 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.80371 -40.32738 -39.61706 -37.05493 -33.95503 -33.33632 -33.00014 -31.97015 -31.53730 -30.11933 -29.97569 -28.69263 -25.56123 -24.55347 -24.40975 -23.46075 -23.08460 -22.13502 -20.93895 -19.60520 -18.96428 -17.52445 -16.97018 -16.58630 -16.55247 -16.18488 -15.90864 -15.83474 -15.33785 -14.84588 -14.59237 -14.33676 -14.03087 -13.90822 -13.74333 -13.73196 -13.41478 -12.92129 -12.64195 -12.49593 -12.21084 -11.97258 -11.90416 -11.72511 -11.12334 -11.00071 -10.93369 -10.73599 -10.60943 -10.56733 -9.92593 -9.82750 -9.78405 -9.65751 -9.44053 -9.43460 -8.93927 -8.82098 -8.57503 -7.21714 -6.33811 -4.42337 0.05570 0.45437 0.68961 0.87993 1.33048 1.64363 1.94704 2.49094 2.69385 3.08790 3.16276 3.20146 3.24223 3.30825 3.63843 3.81795 3.88659 4.15734 4.20252 4.22427 4.36828 4.59405 4.72173 4.76902 4.81708 4.88522 5.03490 5.11334 5.25729 5.34374 5.40711 5.45064 5.54664 5.73999 5.86341 5.90074 5.98118 6.04451 6.11942 6.26057 6.35581 6.36621 6.60895 6.91998 7.04117 7.53961 7.57564 7.64959 7.67344 7.77166 8.58671 9.22409 10.76412 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.008361 B = 0.003035 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.097336 B = 9223.460752 C =12556.413570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.066 3.934 10 S -0.001 6.001 11 C 0.372 3.628 12 N -0.484 5.484 13 C 0.157 3.843 14 C -0.097 4.097 15 C -0.078 4.078 16 C -0.135 4.135 17 C -0.053 4.053 18 C -0.099 4.099 19 C 0.334 3.666 20 N -0.514 5.514 21 C 0.277 3.723 22 C 0.035 3.965 23 C -0.129 4.129 24 C 0.095 3.905 25 N -0.478 5.478 26 C 0.099 3.901 27 C -0.134 4.134 28 N -0.273 5.273 29 N -0.331 5.331 30 H 0.268 0.732 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.147 0.853 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 -19.572 -0.002 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.087 0.913 9 C -0.081 4.081 10 S 0.239 5.761 11 C 0.002 3.998 12 N -0.207 5.207 13 C 0.040 3.960 14 C -0.117 4.117 15 C -0.099 4.099 16 C -0.154 4.154 17 C -0.074 4.074 18 C -0.107 4.107 19 C 0.065 3.935 20 N -0.242 5.242 21 C -0.002 4.002 22 C 0.024 3.976 23 C -0.151 4.151 24 C -0.061 4.061 25 N -0.187 5.187 26 C -0.058 4.058 27 C -0.156 4.156 28 N -0.101 5.101 29 N -0.118 5.118 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.179 0.821 39 H 0.181 0.819 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.431 -19.080 0.000 19.133 hybrid contribution -1.750 0.867 -0.001 1.953 sum -0.319 -18.213 -0.001 18.215 Atomic orbital electron populations 1.69969 1.06106 1.27550 1.48103 1.24920 0.94999 0.99194 0.94129 0.86276 0.80052 0.82286 0.77950 1.19325 1.20533 1.20529 1.20632 0.93416 0.88454 1.54524 0.91309 1.21555 0.94151 0.89358 1.03032 1.86342 1.10956 0.94329 1.84483 1.25697 0.94282 0.86584 0.93200 1.69449 0.96623 1.30827 1.23783 1.18785 0.94190 0.86843 0.96157 1.20929 0.89263 1.00993 1.00550 1.21273 1.00059 0.92190 0.96339 1.21154 0.95161 0.96909 1.02219 1.20950 0.92155 0.98457 0.95818 1.18397 0.86516 0.95014 1.10799 1.22663 0.92816 0.82921 0.95085 1.70378 1.00933 1.26217 1.26684 1.22310 0.90915 0.89317 0.97705 1.17712 0.89246 0.91049 0.99596 1.22247 1.01943 0.92092 0.98769 1.22736 0.87075 1.00512 0.95794 1.67633 1.23803 1.16455 1.10827 1.22735 0.99676 0.87880 0.95505 1.22324 0.91709 1.02671 0.98921 1.78505 0.95260 1.09242 1.27047 1.48850 1.05468 1.06963 1.50519 0.92243 0.92287 0.92294 0.83554 0.84669 0.84913 0.84432 0.83425 0.82055 0.81932 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.30 13.29 55.43 0.74 -23.57 16 2 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 3 Si 0.91 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -13.97 9.13 -34.44 -0.31 -14.28 16 8 H 0.07 1.78 7.71 -52.48 -0.40 1.38 16 9 C 0.07 1.63 4.54 36.00 0.16 1.79 16 10 S 0.00 -0.02 22.03 -107.50 -2.37 -2.39 16 11 C 0.37 7.49 7.95 -88.36 -0.70 6.79 16 12 N -0.48 -9.58 8.96 -10.73 -0.10 -9.68 16 13 C 0.16 2.64 6.63 -84.51 -0.56 2.08 16 14 C -0.10 -1.32 10.02 -39.23 -0.39 -1.71 16 15 C -0.08 -0.79 10.00 -39.57 -0.40 -1.19 16 16 C -0.13 -1.29 10.02 -39.52 -0.40 -1.68 16 17 C -0.05 -0.63 9.86 -39.36 -0.39 -1.02 16 18 C -0.10 -1.55 5.89 -104.87 -0.62 -2.17 16 19 C 0.33 5.79 7.96 -154.65 -1.23 4.56 16 20 N -0.51 -8.33 10.92 -9.03 -0.10 -8.43 16 21 C 0.28 4.41 7.78 -156.62 -1.22 3.19 16 22 C 0.03 0.45 5.91 -104.58 -0.62 -0.17 16 23 C -0.13 -1.35 9.78 -39.11 -0.38 -1.73 16 24 C 0.10 0.89 11.17 -17.61 -0.20 0.69 16 25 N -0.48 -5.12 10.35 -13.34 -0.14 -5.25 16 26 C 0.10 0.97 11.17 -17.60 -0.20 0.77 16 27 C -0.13 -1.51 9.77 -39.11 -0.38 -1.89 16 28 N -0.27 -4.89 12.32 32.10 0.40 -4.49 16 29 N -0.33 -6.29 3.95 -10.83 -0.04 -6.34 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.06 1.53 8.10 -51.92 -0.42 1.11 16 32 H 0.06 1.53 8.10 -51.92 -0.42 1.11 16 33 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 36 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.15 1.39 7.91 -52.49 -0.42 0.97 16 38 H 0.16 0.99 8.06 -52.48 -0.42 0.56 16 39 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.15 1.60 7.91 -52.49 -0.42 1.19 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -30.72 372.10 -12.70 -43.42 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -3.75 Total: 0.01 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -7.93 Total: -4.11 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.76 Total: -57.76 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.37 Total: -2.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.72 -12.70 -43.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009938018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.882 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds