Wall clock time and date at job start Tue Mar 31 2020 05:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99798 * 2 1 4 4 H 1.48503 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47200 * 299.99925 * 3 2 1 6 6 H 1.48494 * 109.47213 * 59.99959 * 3 2 1 7 7 C 1.37878 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99875 * 359.97438 * 7 2 1 10 10 S 1.81002 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.76203 * 100.00018 * 180.02562 * 10 9 7 12 12 N 1.30864 * 118.61376 * 359.97438 * 11 10 9 13 13 C 1.35458 * 122.00502 * 180.02562 * 12 11 10 14 14 C 1.39779 * 121.41372 * 179.97438 * 13 12 11 15 15 C 1.37615 * 119.75543 * 180.02562 * 14 13 12 16 16 C 1.38876 * 120.80693 * 359.97438 * 15 14 13 17 17 C 1.37773 * 120.54245 * 0.02562 * 16 15 14 18 18 C 1.39283 * 119.61009 * 0.02562 * 17 16 15 19 19 C 1.46782 * 121.99770 * 180.02562 * 18 17 16 20 20 N 1.31456 * 134.36979 * 359.86568 * 19 18 17 21 21 C 1.33734 * 109.65607 * 180.08942 * 20 19 18 22 22 C 1.48417 * 125.36237 * 180.02562 * 21 20 19 23 23 C 1.39746 * 120.90078 * 359.75595 * 22 21 20 24 24 C 1.37992 * 119.01960 * 179.70487 * 23 22 21 25 25 N 1.31912 * 120.88203 * 0.57778 * 24 23 22 26 26 C 1.31917 * 122.00075 * 359.71117 * 25 24 23 27 27 C 1.37996 * 120.87990 * 359.97438 * 26 25 24 28 28 N 1.31756 * 109.27915 * 0.04472 * 21 20 19 29 29 N 1.36887 * 118.61405 * 180.02562 * 11 10 9 30 30 H 0.97002 * 120.00090 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46915 * 60.00391 * 9 7 2 32 32 H 1.08996 * 109.47436 * 300.00538 * 9 7 2 33 33 H 1.07997 * 120.12202 * 0.30482 * 14 13 12 34 34 H 1.07997 * 119.59434 * 179.97438 * 15 14 13 35 35 H 1.08004 * 119.72627 * 180.02562 * 16 15 14 36 36 H 1.07993 * 120.19068 * 179.97438 * 17 16 15 37 37 H 1.07998 * 120.48844 * 359.97438 * 23 22 21 38 38 H 1.08005 * 119.56271 * 180.29188 * 24 23 22 39 39 H 1.07997 * 119.56072 * 180.02562 * 26 25 24 40 40 H 1.07998 * 120.49017 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4274 -3.8748 -0.0005 11 6 1.3073 -5.2351 -0.0013 12 7 0.0221 -4.9886 -0.0012 13 6 -0.8993 -5.9816 -0.0012 14 6 -2.2693 -5.7042 -0.0005 15 6 -3.1758 -6.7396 -0.0001 16 6 -2.7468 -8.0604 -0.0008 17 6 -1.4020 -8.3598 -0.0015 18 6 -0.4671 -7.3274 -0.0009 19 6 0.9776 -7.5864 -0.0022 20 7 1.7167 -8.6735 -0.0017 21 6 3.0111 -8.3376 -0.0015 22 6 4.1466 -9.2933 -0.0015 23 6 3.9235 -10.6728 0.0033 24 6 5.0078 -11.5263 -0.0031 25 7 6.2400 -11.0555 -0.0023 26 6 6.4938 -9.7610 -0.0010 27 6 5.4678 -8.8382 -0.0009 28 7 3.1197 -7.0245 -0.0008 29 7 1.8183 -6.5050 -0.0010 30 1 -0.4850 0.8401 -0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 -2.6151 -4.6811 -0.0049 34 1 -4.2337 -6.5223 0.0009 35 1 -3.4735 -8.8595 -0.0009 36 1 -1.0748 -9.3890 -0.0017 37 1 2.9173 -11.0652 0.0076 38 1 4.8454 -12.5941 -0.0042 39 1 7.5181 -9.4189 -0.0007 40 1 5.6828 -7.7798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009938018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:48 Heat of formation + Delta-G solvation = 161.047769 kcal Electronic energy + Delta-G solvation = -27618.030930 eV Core-core repulsion = 23718.173866 eV Total energy + Delta-G solvation = -3899.857064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.085 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.07891 -41.24699 -40.68326 -38.25729 -35.40570 -34.99633 -34.21339 -33.00825 -32.34642 -31.37878 -31.10839 -30.61855 -26.70590 -25.81557 -25.63146 -24.88821 -24.27735 -23.19990 -22.06416 -20.76363 -20.27099 -18.91872 -18.28400 -17.92424 -17.92354 -17.49330 -16.81980 -16.74591 -16.62916 -16.36001 -15.64025 -15.46453 -15.16129 -15.01741 -14.82190 -14.74948 -14.62289 -14.50529 -14.46473 -13.77998 -13.71672 -13.01793 -12.94096 -12.78462 -12.78245 -12.61995 -12.38204 -12.28523 -11.93264 -11.75489 -11.62842 -11.35958 -11.24944 -10.81679 -10.67269 -10.64602 -10.20865 -10.08130 -9.86218 -8.75477 -8.36737 -6.53499 -1.15367 -0.71912 -0.30049 -0.17937 0.10187 0.53860 0.56993 1.30004 1.32561 1.40434 1.41501 1.55044 1.56095 2.01770 2.34034 2.66567 2.70782 2.81136 2.96512 2.98237 3.23044 3.51788 3.55125 3.82659 3.91507 3.99409 4.06759 4.16748 4.25349 4.42896 4.47925 4.56401 4.58928 4.74519 4.83438 4.86147 4.89200 4.96820 4.97640 5.03931 5.17133 5.26512 5.32441 5.49345 5.59803 5.69007 5.74788 6.24769 6.35378 6.53849 6.88482 7.15743 8.75045 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.008361 B = 0.003035 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.097336 B = 9223.460752 C =12556.413570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.550 4.550 8 H 0.069 0.931 9 C 0.082 3.918 10 S -0.005 6.005 11 C 0.353 3.647 12 N -0.498 5.498 13 C 0.111 3.889 14 C -0.108 4.108 15 C -0.059 4.059 16 C -0.102 4.102 17 C -0.056 4.056 18 C -0.109 4.109 19 C 0.322 3.678 20 N -0.511 5.511 21 C 0.282 3.718 22 C 0.007 3.993 23 C -0.124 4.124 24 C 0.103 3.897 25 N -0.489 5.489 26 C 0.103 3.897 27 C -0.141 4.141 28 N -0.305 5.305 29 N -0.344 5.344 30 H 0.273 0.727 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.140 0.860 34 H 0.180 0.820 35 H 0.184 0.816 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.198 0.802 39 H 0.191 0.809 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -22.457 -0.001 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.590 4.590 8 H 0.088 0.912 9 C -0.066 4.066 10 S 0.233 5.767 11 C -0.020 4.020 12 N -0.219 5.219 13 C -0.005 4.005 14 C -0.129 4.129 15 C -0.079 4.079 16 C -0.121 4.121 17 C -0.076 4.076 18 C -0.116 4.116 19 C 0.054 3.946 20 N -0.239 5.239 21 C 0.003 3.997 22 C -0.003 4.003 23 C -0.146 4.146 24 C -0.053 4.053 25 N -0.199 5.199 26 C -0.053 4.053 27 C -0.163 4.163 28 N -0.133 5.133 29 N -0.130 5.130 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.158 0.842 34 H 0.197 0.803 35 H 0.202 0.798 36 H 0.176 0.824 37 H 0.176 0.824 38 H 0.215 0.785 39 H 0.208 0.792 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.137 -22.005 0.001 22.006 hybrid contribution -1.609 1.429 -0.001 2.153 sum -1.473 -20.576 0.000 20.629 Atomic orbital electron populations 1.70079 1.07675 1.28730 1.48738 1.25866 0.95863 1.02828 0.93339 0.85214 0.78863 0.77614 0.78276 1.18652 1.19742 1.19733 1.20970 0.93655 0.89612 1.54742 0.91246 1.21049 0.94280 0.90916 1.00364 1.85947 1.10265 0.93708 1.86798 1.25153 0.94256 0.86654 0.95893 1.69326 0.97164 1.33161 1.22288 1.19172 0.94839 0.87041 0.99438 1.21149 0.88538 1.02154 1.01024 1.21799 1.01447 0.91436 0.93171 1.21781 0.94860 0.97891 0.97573 1.21330 0.92627 0.98409 0.95273 1.18655 0.86344 0.95478 1.11120 1.23243 0.93725 0.82747 0.94868 1.70418 1.00909 1.25414 1.27134 1.22950 0.91707 0.89214 0.95823 1.17933 0.88802 0.91619 1.01976 1.22409 1.03012 0.91026 0.98126 1.23289 0.86123 1.01954 0.93948 1.67738 1.24504 1.16651 1.11005 1.23131 1.00484 0.87432 0.94241 1.22387 0.91659 1.02911 0.99317 1.78473 0.95207 1.10413 1.29248 1.48779 1.06185 1.06764 1.51276 0.91832 0.94957 0.94966 0.84249 0.80312 0.79832 0.82359 0.82384 0.78537 0.79242 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.41 13.29 21.45 0.28 -52.13 16 2 C 0.02 1.29 5.46 84.65 0.46 1.76 16 3 Si 0.98 42.26 29.54 68.60 2.03 44.29 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.55 -30.49 9.13 25.60 0.23 -30.25 16 8 H 0.07 3.75 7.71 -2.91 -0.02 3.72 16 9 C 0.08 4.36 4.54 71.23 0.32 4.68 16 10 S -0.01 -0.25 22.03 -56.49 -1.24 -1.49 16 11 C 0.35 15.35 7.95 179.56 1.43 16.78 16 12 N -0.50 -21.25 8.96 -187.87 -1.68 -22.94 16 13 C 0.11 3.85 6.63 39.72 0.26 4.11 16 14 C -0.11 -2.89 10.02 22.50 0.23 -2.66 16 15 C -0.06 -0.95 10.00 22.28 0.22 -0.73 16 16 C -0.10 -1.42 10.02 22.31 0.22 -1.20 16 17 C -0.06 -1.16 9.86 22.41 0.22 -0.94 16 18 C -0.11 -3.37 5.89 -20.03 -0.12 -3.49 16 19 C 0.32 11.51 7.96 136.05 1.08 12.59 16 20 N -0.51 -16.70 10.92 -182.49 -1.99 -18.69 16 21 C 0.28 9.27 7.78 137.47 1.07 10.34 16 22 C 0.01 0.19 5.91 -19.84 -0.12 0.07 16 23 C -0.12 -2.42 9.78 22.58 0.22 -2.20 16 24 C 0.10 1.67 11.17 84.62 0.95 2.61 16 25 N -0.49 -9.45 10.35 -196.11 -2.03 -11.48 16 26 C 0.10 1.89 11.17 84.62 0.95 2.84 16 27 C -0.14 -3.18 9.77 22.58 0.22 -2.96 16 28 N -0.31 -11.64 12.32 -52.35 -0.64 -12.28 16 29 N -0.34 -13.90 3.95 -188.16 -0.74 -14.64 16 30 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.03 1.83 8.10 -2.39 -0.02 1.81 16 32 H 0.03 1.83 8.10 -2.40 -0.02 1.81 16 33 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 36 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.16 2.68 7.91 -2.91 -0.02 2.66 16 38 H 0.20 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.14 3.28 7.91 -2.91 -0.02 3.26 16 Total: -1.00 -73.00 372.10 2.93 -70.08 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.10 Total: 7.93 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 7.85 Total: 11.36 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -6.81 Total: -132.16 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -1.24 Total: -1.49 kcal Total: -73.00 2.93 -70.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009938018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.123 kcal (2) G-P(sol) polarization free energy of solvation -73.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds