Wall clock time and date at job start Tue Mar 31 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38259 * 119.99767 * 2 1 4 4 C 1.38214 * 119.99894 * 180.22814 * 3 2 1 5 5 C 1.38263 * 119.99848 * 359.81300 * 4 3 2 6 6 C 1.38214 * 119.99923 * 359.97107 * 5 4 3 7 7 C 1.38208 * 120.00171 * 179.78338 * 2 1 3 8 8 C 1.50703 * 120.00079 * 0.02562 * 7 2 1 9 9 N 1.46898 * 109.46754 * 285.73169 * 8 7 2 10 10 C 1.46904 * 111.00223 * 284.18079 * 9 8 7 11 11 C 1.46906 * 111.00161 * 160.22766 * 9 8 7 12 12 C 1.50695 * 109.47366 * 190.00046 * 11 9 8 13 13 N 1.29832 * 118.35025 * 359.73077 * 12 11 9 14 14 C 1.35639 * 121.62129 * 179.76384 * 13 12 11 15 15 C 1.39630 * 121.61631 * 180.27731 * 14 13 12 16 16 C 1.37710 * 119.68911 * 180.19900 * 15 14 13 17 17 C 1.38874 * 120.82815 * 0.02562 * 16 15 14 18 18 C 1.37784 * 120.57117 * 359.97438 * 17 16 15 19 19 C 1.39371 * 119.52081 * 0.02562 * 18 17 16 20 20 C 1.46961 * 121.91279 * 180.02562 * 19 18 17 21 21 O 1.21722 * 121.28211 * 359.97438 * 20 19 18 22 22 N 1.35332 * 117.42832 * 179.97438 * 20 19 18 23 23 C 1.37109 * 119.71591 * 180.02562 * 22 20 19 24 24 H 1.07996 * 119.99810 * 138.31501 * 23 22 20 25 25 C 1.39069 * 119.99673 * 318.30687 * 23 22 20 26 26 N 1.31256 * 120.00698 * 338.25037 * 25 23 22 27 27 Si 1.86803 * 119.99663 * 158.25500 * 25 23 22 28 28 H 1.48500 * 109.47365 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47346 * 120.00176 * 27 25 23 30 30 H 1.48510 * 109.46963 * 240.00018 * 27 25 23 31 31 H 1.09006 * 109.47566 * 264.53500 * 1 2 3 32 32 H 1.09002 * 109.47497 * 24.53792 * 1 2 3 33 33 H 1.09002 * 109.47287 * 144.53885 * 1 2 3 34 34 H 1.08001 * 120.00431 * 0.06326 * 3 2 1 35 35 H 1.07996 * 119.99842 * 179.83013 * 4 3 2 36 36 H 1.08000 * 119.99932 * 180.02562 * 5 4 3 37 37 H 1.07999 * 119.99518 * 179.97438 * 6 5 4 38 38 H 1.08993 * 109.47179 * 165.73343 * 8 7 2 39 39 H 1.08996 * 109.47158 * 45.72914 * 8 7 2 40 40 H 1.08996 * 109.46580 * 54.05205 * 10 9 8 41 41 H 1.08999 * 109.47049 * 294.05002 * 10 9 8 42 42 H 1.09002 * 109.46953 * 174.04770 * 10 9 8 43 43 H 1.08993 * 109.46739 * 310.00557 * 11 9 8 44 44 H 1.09007 * 109.46513 * 69.99803 * 11 9 8 45 45 H 1.07994 * 120.15699 * 0.17312 * 15 14 13 46 46 H 1.08003 * 119.58768 * 179.97438 * 16 15 14 47 47 H 1.08008 * 119.71406 * 180.02562 * 17 16 15 48 48 H 1.08003 * 120.24680 * 180.02562 * 18 17 16 49 49 H 0.96997 * 120.00590 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0048 5 6 4.2717 0.0000 -0.0056 6 6 3.5806 -1.1969 -0.0011 7 6 2.1980 -1.1969 0.0045 8 6 1.4446 -2.5020 0.0089 9 7 0.8741 -2.7335 1.3426 10 6 1.9099 -3.1652 2.2907 11 6 -0.2243 -3.7073 1.2836 12 6 -0.9411 -3.7369 2.6089 13 7 -0.5171 -2.9575 3.5567 14 6 -1.1155 -2.9271 4.7736 15 6 -0.6630 -2.0847 5.7910 16 6 -1.2978 -2.0890 7.0130 17 6 -2.3840 -2.9219 7.2478 18 6 -2.8492 -3.7621 6.2598 19 6 -2.2210 -3.7734 5.0158 20 6 -2.6736 -4.6478 3.9248 21 8 -3.6199 -5.3997 4.0686 22 7 -1.9977 -4.5846 2.7540 23 6 -2.3804 -5.3796 1.7045 24 1 -2.4030 -4.9772 0.7026 25 6 -2.7394 -6.7040 1.9304 26 7 -2.3256 -7.3210 3.0125 27 14 -3.8106 -7.6052 0.6934 28 1 -4.1411 -6.6942 -0.4317 29 1 -3.0789 -8.7886 0.1743 30 1 -5.0640 -8.0492 1.3548 31 1 -0.3634 -0.0979 1.0230 32 1 -0.3634 0.9348 -0.4268 33 1 -0.3634 -0.8370 -0.5962 34 1 1.6582 2.1327 0.0010 35 1 4.1203 2.1327 -0.0075 36 1 5.3516 0.0000 -0.0089 37 1 4.1206 -2.1322 -0.0022 38 1 2.1255 -3.3155 -0.2412 39 1 0.6420 -2.4607 -0.7274 40 1 2.7274 -2.4443 2.2885 41 1 2.2877 -4.1440 1.9952 42 1 1.4830 -3.2275 3.2917 43 1 -0.9235 -3.4192 0.4987 44 1 0.1786 -4.6966 1.0662 45 1 0.1813 -1.4332 5.6206 46 1 -0.9462 -1.4371 7.7990 47 1 -2.8688 -2.9103 8.2129 48 1 -3.6946 -4.4074 6.4480 49 1 -2.5763 -8.2446 3.1702 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010897590.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:28 Heat of formation + Delta-G solvation = 59.877080 kcal Electronic energy + Delta-G solvation = -32820.451706 eV Core-core repulsion = 28712.828119 eV Total energy + Delta-G solvation = -4107.623587 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.50913 -39.55962 -37.66914 -37.18135 -35.68579 -33.77947 -32.70932 -31.91903 -31.58648 -30.36363 -29.31966 -27.30428 -27.13582 -26.18671 -25.79150 -23.40383 -22.83694 -21.90078 -21.34273 -20.77247 -20.08931 -18.76201 -17.81442 -16.98571 -16.27722 -15.80413 -15.58693 -15.23431 -15.01471 -14.92803 -14.71465 -14.28613 -14.13470 -13.90595 -13.78027 -13.56128 -13.31068 -13.03847 -12.98769 -12.61404 -12.44518 -12.23259 -12.18523 -12.04824 -11.89012 -11.81335 -11.56072 -11.40531 -11.25605 -11.19233 -10.97295 -10.94199 -10.85505 -10.66114 -10.59042 -10.46934 -9.55621 -8.93426 -8.74135 -8.71974 -8.46470 -8.37422 -8.35382 -7.88996 -7.04360 -6.71228 -4.53915 1.43086 1.48827 1.51555 1.67668 3.02124 3.11899 3.15371 3.24248 3.66587 3.81266 3.92710 4.16463 4.56657 4.68124 4.87797 4.89592 4.92417 5.05909 5.10714 5.13036 5.30117 5.40685 5.44202 5.48052 5.57026 5.60678 5.68134 5.72198 5.78629 5.84382 5.87343 5.94292 6.03441 6.04614 6.09239 6.11718 6.15286 6.19543 6.42250 6.44829 6.55226 6.56158 6.63913 6.75690 6.81650 6.83247 7.03270 7.07804 7.10343 7.15823 7.34727 7.46924 7.52136 7.61115 8.11152 8.46059 8.71607 9.19567 9.49961 10.30149 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.003581 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.214097 B = 7816.290213 C =10090.474892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.053 4.053 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.133 4.133 6 C -0.111 4.111 7 C -0.070 4.070 8 C 0.089 3.911 9 N -0.511 5.511 10 C 0.024 3.976 11 C 0.123 3.877 12 C 0.365 3.635 13 N -0.543 5.543 14 C 0.168 3.832 15 C -0.130 4.130 16 C -0.090 4.090 17 C -0.177 4.177 18 C -0.039 4.039 19 C -0.210 4.210 20 C 0.521 3.479 21 O -0.506 6.506 22 N -0.351 5.351 23 C -0.387 4.387 24 H 0.107 0.893 25 C 0.083 3.917 26 N -0.800 5.800 27 Si 0.925 3.075 28 H -0.262 1.262 29 H -0.278 1.278 30 H -0.273 1.273 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.012 0.988 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.124 0.876 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.122 0.878 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.178 11.167 -4.389 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.054 4.054 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.151 4.151 6 C -0.129 4.129 7 C -0.070 4.070 8 C -0.038 4.038 9 N -0.234 5.234 10 C -0.124 4.124 11 C -0.006 4.006 12 C 0.102 3.898 13 N -0.270 5.270 14 C 0.052 3.948 15 C -0.150 4.150 16 C -0.110 4.110 17 C -0.196 4.196 18 C -0.058 4.058 19 C -0.218 4.218 20 C 0.315 3.685 21 O -0.380 6.380 22 N -0.055 5.055 23 C -0.514 4.514 24 H 0.125 0.875 25 C -0.134 4.134 26 N -0.428 5.428 27 Si 0.749 3.251 28 H -0.186 1.186 29 H -0.203 1.203 30 H -0.198 1.198 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.031 0.969 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.085 0.915 45 H 0.142 0.858 46 H 0.134 0.866 47 H 0.133 0.867 48 H 0.140 0.860 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.945 11.381 -4.033 15.027 hybrid contribution -0.737 -1.805 -0.421 1.995 sum 8.207 9.576 -4.454 13.375 Atomic orbital electron populations 1.20775 0.90901 1.01407 1.03571 1.19757 0.96325 0.92189 0.97079 1.21019 0.94176 0.97476 1.01830 1.21051 0.94358 0.97759 1.00820 1.21010 0.99436 0.92608 1.02038 1.21027 0.93689 0.97907 1.00304 1.19616 0.93045 0.94564 0.99818 1.21057 0.97665 0.93320 0.91772 1.61648 1.09782 1.45664 1.06311 1.22583 0.93867 0.96710 0.99199 1.20781 0.92652 0.95116 0.92075 1.22669 0.83840 0.88134 0.95153 1.68484 1.31333 1.27397 0.99827 1.18858 0.90912 0.93217 0.91858 1.20593 1.01582 1.00674 0.92177 1.20970 0.95511 0.98113 0.96403 1.20825 0.99626 1.00011 0.99139 1.20877 0.97677 0.95954 0.91325 1.20847 1.01370 1.03092 0.96494 1.18215 0.83568 0.83949 0.82732 1.90663 1.27729 1.38956 1.80689 1.42252 1.20877 1.29384 1.12952 1.19576 1.51048 0.92374 0.88374 0.87507 1.25381 0.94804 0.96285 0.96965 1.69813 1.35244 1.12006 1.25703 0.85943 0.80131 0.79026 0.79965 1.18624 1.20333 1.19827 0.89754 0.92781 0.91603 0.86469 0.86654 0.86629 0.86545 0.94097 0.89988 0.92410 0.96950 0.88255 0.88738 0.91483 0.85765 0.86585 0.86698 0.85994 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.37 36.00 0.34 -0.98 16 2 C -0.05 -0.66 5.88 -104.63 -0.62 -1.28 16 3 C -0.13 -1.44 9.68 -39.58 -0.38 -1.82 16 4 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 5 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 6 C -0.11 -1.27 9.17 -39.58 -0.36 -1.63 16 7 C -0.07 -0.87 4.80 -104.62 -0.50 -1.38 16 8 C 0.09 1.13 4.46 -4.98 -0.02 1.11 16 9 N -0.51 -7.77 4.19 -245.82 -1.03 -8.80 16 10 C 0.02 0.38 8.98 60.07 0.54 0.92 16 11 C 0.12 2.13 4.07 -4.98 -0.02 2.11 16 12 C 0.37 7.84 7.24 -154.87 -1.12 6.72 16 13 N -0.54 -11.36 7.04 -8.10 -0.06 -11.42 16 14 C 0.17 3.59 6.63 -84.50 -0.56 3.03 16 15 C -0.13 -2.34 10.03 -39.26 -0.39 -2.74 16 16 C -0.09 -1.44 10.00 -39.54 -0.40 -1.84 16 17 C -0.18 -3.00 10.02 -39.51 -0.40 -3.39 16 18 C -0.04 -0.80 9.68 -39.33 -0.38 -1.18 16 19 C -0.21 -4.91 5.89 -104.78 -0.62 -5.53 16 20 C 0.52 13.83 6.95 -12.48 -0.09 13.74 16 21 O -0.51 -14.77 14.42 5.17 0.07 -14.69 16 22 N -0.35 -8.72 2.67 -59.57 -0.16 -8.88 16 23 C -0.39 -9.57 8.20 -14.88 -0.12 -9.69 16 24 H 0.11 2.38 7.10 -52.49 -0.37 2.01 16 25 C 0.08 2.10 4.29 -17.49 -0.07 2.03 16 26 N -0.80 -21.88 11.77 55.50 0.65 -21.23 16 27 Si 0.92 19.49 29.60 -169.99 -5.03 14.46 16 28 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 29 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 30 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.55 8.05 -51.93 -0.42 0.13 16 33 H 0.07 0.77 6.48 -51.93 -0.34 0.43 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.19 7.99 -52.49 -0.42 0.77 16 38 H 0.04 0.49 7.80 -51.93 -0.40 0.09 16 39 H 0.08 0.97 6.35 -51.93 -0.33 0.64 16 40 H 0.06 0.83 7.09 -51.93 -0.37 0.47 16 41 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 42 H 0.10 1.79 5.66 -51.93 -0.29 1.50 16 43 H 0.09 1.52 7.27 -51.93 -0.38 1.14 16 44 H 0.07 1.20 8.01 -51.92 -0.42 0.78 16 45 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 46 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 47 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 48 H 0.12 2.50 7.83 -52.48 -0.41 2.09 16 49 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -30.37 399.01 -12.17 -42.54 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.66 Total: 7.28 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -5.97 Total: -5.28 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.59 Total: -50.33 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.07 Total: -14.69 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.37 -12.17 -42.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010897590.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.418 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds