Wall clock time and date at job start Tue Mar 31 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99859 * 2 1 4 4 H 1.48499 * 109.46616 * 269.99354 * 3 2 1 5 5 H 1.48492 * 109.47192 * 29.99434 * 3 2 1 6 6 H 1.48496 * 109.47267 * 149.99891 * 3 2 1 7 7 C 1.37877 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00258 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99706 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47252 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.34387 * 124.28015 * 270.33674 * 11 10 9 13 13 O 1.21690 * 126.05918 * 359.97438 * 12 11 10 14 14 C 1.47661 * 107.87903 * 180.16453 * 12 11 10 15 15 N 1.31124 * 127.51847 * 179.81962 * 14 12 11 16 16 N 1.40094 * 119.99989 * 359.68594 * 15 14 12 17 17 C 1.34782 * 120.00195 * 179.97438 * 16 15 14 18 18 O 1.21535 * 119.99448 * 359.97438 * 17 16 15 19 19 C 1.47735 * 120.00445 * 180.02562 * 17 16 15 20 20 C 1.39634 * 120.15081 * 180.02562 * 19 17 16 21 21 C 1.37936 * 119.84494 * 180.02562 * 20 19 17 22 22 C 1.38378 * 120.15313 * 0.02562 * 21 20 19 23 23 C 1.38373 * 120.30241 * 0.23775 * 22 21 20 24 24 C 1.37940 * 120.14732 * 359.47897 * 23 22 21 25 25 C 1.48142 * 104.96374 * 359.56282 * 14 12 11 26 26 C 1.39038 * 133.21576 * 180.23328 * 25 14 12 27 27 C 1.38053 * 119.73552 * 179.97438 * 26 25 14 28 28 C 1.38475 * 120.06898 * 0.04970 * 27 26 25 29 29 C 1.38020 * 120.62296 * 359.97005 * 28 27 26 30 30 C 1.39054 * 124.27255 * 90.00505 * 11 10 9 31 31 H 0.96995 * 119.99979 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47159 * 59.99973 * 9 7 2 33 33 H 1.08996 * 109.47114 * 299.99680 * 9 7 2 34 34 H 1.09007 * 109.47090 * 59.99995 * 10 9 7 35 35 H 1.09005 * 109.47373 * 300.00702 * 10 9 7 36 36 H 0.96997 * 120.00257 * 0.02562 * 16 15 14 37 37 H 1.07997 * 120.07727 * 359.97438 * 20 19 17 38 38 H 1.08002 * 119.92605 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.84639 * 179.97438 * 22 21 20 40 40 H 1.07991 * 119.92394 * 179.74911 * 23 22 21 41 41 H 1.08002 * 120.07433 * 180.23606 * 24 23 22 42 42 H 1.08001 * 120.13404 * 0.02562 * 26 25 14 43 43 H 1.08002 * 119.96865 * 180.02562 * 27 26 25 44 44 H 1.07997 * 119.69232 * 179.97438 * 28 27 26 45 45 H 1.08000 * 119.93352 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.1292 -5.5827 1.1119 13 8 1.3288 -5.2247 2.2576 14 6 0.4264 -6.8128 0.6956 15 7 -0.1032 -7.7304 1.4683 16 7 -0.0285 -7.6014 2.8612 17 6 -0.5733 -8.5443 3.6555 18 8 -1.1297 -9.5061 3.1632 19 6 -0.4952 -8.4080 5.1245 20 6 -1.0580 -9.3833 5.9502 21 6 -0.9819 -9.2494 7.3210 22 6 -0.3499 -8.1517 7.8782 23 6 0.2052 -7.1788 7.0658 24 6 0.1413 -7.3030 5.6934 25 6 0.4445 -6.7812 -0.7854 26 6 -0.0499 -7.6383 -1.7621 27 6 0.1268 -7.3306 -3.0963 28 6 0.7949 -6.1732 -3.4588 29 6 1.2897 -5.3162 -2.4966 30 6 1.1211 -5.6093 -1.1476 31 1 -0.4850 0.8400 -0.0004 32 1 0.6248 -2.5571 -0.8897 33 1 0.6242 -2.5567 0.8903 34 1 2.8720 -3.6043 0.8906 35 1 2.8721 -3.6043 -0.8894 36 1 0.4145 -6.8332 3.2542 37 1 -1.5526 -10.2399 5.5167 38 1 -1.4171 -10.0028 7.9609 39 1 -0.2935 -8.0517 8.9521 40 1 0.6934 -6.3226 7.5071 41 1 0.5784 -6.5449 5.0605 42 1 -0.5708 -8.5408 -1.4783 43 1 -0.2560 -7.9936 -3.8581 44 1 0.9301 -5.9386 -4.5043 45 1 1.8086 -4.4163 -2.7919 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012354466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:19 Heat of formation + Delta-G solvation = 42.619836 kcal Electronic energy + Delta-G solvation = -30668.914689 eV Core-core repulsion = 26424.709677 eV Total energy + Delta-G solvation = -4244.205012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.61688 -40.40597 -38.64902 -38.33569 -36.52827 -35.88558 -33.92973 -32.96262 -31.74747 -31.28430 -30.71059 -30.09792 -28.79560 -26.49496 -24.79595 -23.83460 -22.83331 -22.49977 -21.81423 -21.13549 -20.83900 -19.91051 -18.59340 -17.81411 -17.00141 -16.60088 -16.45648 -15.88652 -15.83384 -15.69774 -15.24626 -15.19880 -14.85721 -14.54115 -14.28872 -14.15245 -14.00785 -13.79287 -13.56520 -13.13280 -13.01033 -12.92162 -12.63764 -12.31000 -12.26906 -12.02982 -11.92211 -11.68942 -11.43803 -11.15068 -11.05425 -10.94283 -10.46246 -10.35632 -10.23414 -9.89101 -9.74762 -9.56943 -9.36867 -9.33693 -9.33124 -8.53719 -8.50281 -7.79038 -6.14565 -4.19954 0.08871 0.57104 1.02028 1.29944 1.78145 2.02810 2.57732 2.81735 3.11480 3.23591 3.30714 3.33508 3.55533 3.79316 3.88176 4.10591 4.34222 4.48113 4.52466 4.59375 4.62532 4.79845 4.96060 5.01170 5.08593 5.12167 5.21644 5.23888 5.40376 5.46919 5.51782 5.63669 5.71512 5.86632 5.94001 6.00885 6.05047 6.09001 6.13484 6.29670 6.45283 6.48073 6.50556 6.59897 6.70397 6.78261 7.06001 7.13944 7.45001 7.54880 7.76259 7.86818 7.98951 8.17424 8.85587 9.45295 10.96585 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.007662 B = 0.002792 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3653.431714 B =10026.949742 C =13247.418822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.111 3.889 11 N -0.529 5.529 12 C 0.537 3.463 13 O -0.502 6.502 14 C 0.083 3.917 15 N -0.134 5.134 16 N -0.571 5.571 17 C 0.579 3.421 18 O -0.498 6.498 19 C -0.135 4.135 20 C -0.054 4.054 21 C -0.130 4.130 22 C -0.090 4.090 23 C -0.124 4.124 24 C -0.082 4.082 25 C -0.112 4.112 26 C -0.035 4.035 27 C -0.154 4.154 28 C -0.065 4.065 29 C -0.134 4.134 30 C 0.181 3.819 31 H 0.263 0.737 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.409 0.591 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 -17.975 4.834 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.008 4.008 11 N -0.247 5.247 12 C 0.323 3.677 13 O -0.375 6.375 14 C -0.107 4.107 15 N 0.054 4.946 16 N -0.318 5.318 17 C 0.368 3.632 18 O -0.370 6.370 19 C -0.140 4.140 20 C -0.073 4.073 21 C -0.148 4.148 22 C -0.108 4.108 23 C -0.142 4.142 24 C -0.101 4.101 25 C -0.117 4.117 26 C -0.055 4.055 27 C -0.173 4.173 28 C -0.085 4.085 29 C -0.155 4.155 30 C 0.081 3.919 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.253 0.747 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.272 -19.040 5.459 19.809 hybrid contribution 1.002 2.314 0.326 2.543 sum 0.730 -16.725 5.786 17.713 Atomic orbital electron populations 1.69966 1.06148 1.26984 1.49649 1.24998 0.94858 0.99413 0.94835 0.86521 0.79813 0.83056 0.78210 1.20481 1.21109 1.19733 1.20984 0.93039 0.90274 1.52241 0.92249 1.19435 0.94187 0.90715 0.98277 1.22292 0.95647 0.79903 1.02959 1.45882 1.51690 1.22961 1.04216 1.18994 0.79558 0.84192 0.85003 1.90759 1.56261 1.71636 1.18798 1.23394 0.99239 0.93339 0.94768 1.75268 1.10181 1.19372 0.89776 1.47027 1.56705 1.26573 1.01518 1.18205 0.77646 0.81425 0.85972 1.90777 1.40642 1.29850 1.75776 1.19716 1.04778 0.98263 0.91196 1.21279 0.95510 0.97464 0.93079 1.21175 1.00324 0.98706 0.94549 1.21464 0.95499 0.93484 1.00351 1.21177 1.00271 0.99686 0.93069 1.21519 0.96277 0.96159 0.96108 1.18259 1.07242 0.97984 0.88247 1.20610 0.95835 0.97741 0.91361 1.20987 1.02511 0.98485 0.95347 1.21044 0.95049 0.93138 0.99220 1.20423 1.04439 1.01904 0.88734 1.18369 0.94404 0.90371 0.88728 0.92721 0.95831 0.95958 0.89878 0.90079 0.74688 0.84326 0.84997 0.85281 0.84880 0.85109 0.84860 0.85109 0.84896 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.01 0.29 5.30 -27.88 -0.15 0.14 16 10 C 0.11 2.18 5.71 -4.05 -0.02 2.15 16 11 N -0.53 -9.60 2.73 -114.49 -0.31 -9.91 16 12 C 0.54 10.01 7.94 -12.59 -0.10 9.91 16 13 O -0.50 -10.01 15.48 5.20 0.08 -9.93 16 14 C 0.08 1.40 7.56 -80.26 -0.61 0.79 16 15 N -0.13 -2.28 11.19 34.74 0.39 -1.89 16 16 N -0.57 -9.09 6.20 30.50 0.19 -8.90 16 17 C 0.58 8.85 7.89 -12.38 -0.10 8.75 16 18 O -0.50 -8.80 16.68 5.33 0.09 -8.72 16 19 C -0.14 -1.66 5.87 -104.97 -0.62 -2.27 16 20 C -0.05 -0.56 9.60 -39.17 -0.38 -0.94 16 21 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 22 C -0.09 -0.68 10.04 -39.48 -0.40 -1.08 16 23 C -0.12 -1.10 10.03 -39.64 -0.40 -1.49 16 24 C -0.08 -0.89 9.54 -39.17 -0.37 -1.27 16 25 C -0.11 -1.68 6.34 -104.85 -0.67 -2.35 16 26 C -0.04 -0.42 10.09 -39.35 -0.40 -0.82 16 27 C -0.15 -1.55 10.05 -39.56 -0.40 -1.95 16 28 C -0.06 -0.68 10.01 -39.57 -0.40 -1.07 16 29 C -0.13 -1.78 9.79 -39.35 -0.39 -2.17 16 30 C 0.18 2.86 6.73 -83.59 -0.56 2.30 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.65 7.97 -51.93 -0.41 1.23 16 35 H 0.08 1.41 7.75 -51.93 -0.40 1.01 16 36 H 0.41 6.26 4.31 -182.60 -0.79 5.48 16 37 H 0.14 1.37 7.65 -52.49 -0.40 0.97 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.13 1.43 6.41 -52.49 -0.34 1.09 16 42 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.14 1.75 7.80 -52.49 -0.41 1.34 16 LS Contribution 396.07 15.07 5.97 5.97 Total: -1.00 -33.53 396.07 -10.30 -43.83 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.67 Total: 4.63 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -6.75 Total: -5.61 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 1.00 Total: -46.01 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.17 Total: -18.64 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.53 -10.30 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012354466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.448 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds