Wall clock time and date at job start Tue Mar 31 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99859 * 2 1 4 4 H 1.48499 * 109.46616 * 269.99354 * 3 2 1 5 5 H 1.48492 * 109.47192 * 29.99434 * 3 2 1 6 6 H 1.48496 * 109.47267 * 149.99891 * 3 2 1 7 7 C 1.37877 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00258 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99706 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47252 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.34387 * 124.28015 * 270.33674 * 11 10 9 13 13 O 1.21690 * 126.05918 * 359.97438 * 12 11 10 14 14 C 1.47661 * 107.87903 * 180.16453 * 12 11 10 15 15 N 1.31124 * 127.51847 * 179.81962 * 14 12 11 16 16 N 1.40094 * 119.99989 * 359.68594 * 15 14 12 17 17 C 1.34782 * 120.00195 * 179.97438 * 16 15 14 18 18 O 1.21535 * 119.99448 * 359.97438 * 17 16 15 19 19 C 1.47735 * 120.00445 * 180.02562 * 17 16 15 20 20 C 1.39634 * 120.15081 * 180.02562 * 19 17 16 21 21 C 1.37936 * 119.84494 * 180.02562 * 20 19 17 22 22 C 1.38378 * 120.15313 * 0.02562 * 21 20 19 23 23 C 1.38373 * 120.30241 * 0.23775 * 22 21 20 24 24 C 1.37940 * 120.14732 * 359.47897 * 23 22 21 25 25 C 1.48142 * 104.96374 * 359.56282 * 14 12 11 26 26 C 1.39038 * 133.21576 * 180.23328 * 25 14 12 27 27 C 1.38053 * 119.73552 * 179.97438 * 26 25 14 28 28 C 1.38475 * 120.06898 * 0.04970 * 27 26 25 29 29 C 1.38020 * 120.62296 * 359.97005 * 28 27 26 30 30 C 1.39054 * 124.27255 * 90.00505 * 11 10 9 31 31 H 0.96995 * 119.99979 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47159 * 59.99973 * 9 7 2 33 33 H 1.08996 * 109.47114 * 299.99680 * 9 7 2 34 34 H 1.09007 * 109.47090 * 59.99995 * 10 9 7 35 35 H 1.09005 * 109.47373 * 300.00702 * 10 9 7 36 36 H 0.96997 * 120.00257 * 0.02562 * 16 15 14 37 37 H 1.07997 * 120.07727 * 359.97438 * 20 19 17 38 38 H 1.08002 * 119.92605 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.84639 * 179.97438 * 22 21 20 40 40 H 1.07991 * 119.92394 * 179.74911 * 23 22 21 41 41 H 1.08002 * 120.07433 * 180.23606 * 24 23 22 42 42 H 1.08001 * 120.13404 * 0.02562 * 26 25 14 43 43 H 1.08002 * 119.96865 * 180.02562 * 27 26 25 44 44 H 1.07997 * 119.69232 * 179.97438 * 28 27 26 45 45 H 1.08000 * 119.93352 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.1292 -5.5827 1.1119 13 8 1.3288 -5.2247 2.2576 14 6 0.4264 -6.8128 0.6956 15 7 -0.1032 -7.7304 1.4683 16 7 -0.0285 -7.6014 2.8612 17 6 -0.5733 -8.5443 3.6555 18 8 -1.1297 -9.5061 3.1632 19 6 -0.4952 -8.4080 5.1245 20 6 -1.0580 -9.3833 5.9502 21 6 -0.9819 -9.2494 7.3210 22 6 -0.3499 -8.1517 7.8782 23 6 0.2052 -7.1788 7.0658 24 6 0.1413 -7.3030 5.6934 25 6 0.4445 -6.7812 -0.7854 26 6 -0.0499 -7.6383 -1.7621 27 6 0.1268 -7.3306 -3.0963 28 6 0.7949 -6.1732 -3.4588 29 6 1.2897 -5.3162 -2.4966 30 6 1.1211 -5.6093 -1.1476 31 1 -0.4850 0.8400 -0.0004 32 1 0.6248 -2.5571 -0.8897 33 1 0.6242 -2.5567 0.8903 34 1 2.8720 -3.6043 0.8906 35 1 2.8721 -3.6043 -0.8894 36 1 0.4145 -6.8332 3.2542 37 1 -1.5526 -10.2399 5.5167 38 1 -1.4171 -10.0028 7.9609 39 1 -0.2935 -8.0517 8.9521 40 1 0.6934 -6.3226 7.5071 41 1 0.5784 -6.5449 5.0605 42 1 -0.5708 -8.5408 -1.4783 43 1 -0.2560 -7.9936 -3.8581 44 1 0.9301 -5.9386 -4.5043 45 1 1.8086 -4.4163 -2.7919 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012354466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:18 Heat of formation + Delta-G solvation = 23.288965 kcal Electronic energy + Delta-G solvation = -30669.752938 eV Core-core repulsion = 26424.709677 eV Total energy + Delta-G solvation = -4245.043262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.90641 -41.46953 -39.71724 -39.40497 -37.85369 -37.19574 -35.65543 -34.45096 -32.93879 -32.09663 -31.99195 -31.14870 -30.10412 -28.01285 -26.24069 -24.98929 -23.80676 -23.62543 -23.13868 -22.47777 -21.91492 -21.24748 -19.65767 -18.97165 -18.76254 -18.01377 -17.40360 -17.30115 -16.96324 -16.80522 -16.61031 -16.41770 -16.30667 -15.67974 -15.38263 -15.31967 -15.02577 -14.63636 -14.63557 -14.51924 -14.42234 -14.26887 -14.01143 -13.68510 -13.56938 -13.38966 -12.90889 -12.87943 -12.75960 -12.73346 -12.18039 -12.15663 -12.11130 -12.03463 -11.53793 -11.49465 -11.25929 -11.06110 -10.97154 -10.63181 -10.13808 -10.08312 -9.62401 -9.01719 -8.26260 -6.39920 -1.12768 -0.31548 0.27644 0.29094 0.69887 0.84233 1.37383 1.41570 1.42880 1.49744 1.53445 1.80221 2.38150 2.61082 2.73516 2.81068 3.04495 3.08221 3.39241 3.48454 3.73386 3.86412 3.88059 4.06000 4.11901 4.16222 4.31988 4.33817 4.37702 4.42380 4.44985 4.57132 4.67729 4.70735 4.86642 4.95096 5.01201 5.16403 5.27745 5.29557 5.33805 5.36285 5.39569 5.46427 5.53562 5.55789 5.68445 5.72115 5.82151 5.89600 6.01228 6.05593 6.42754 6.75697 6.76452 7.30762 8.85905 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.007662 B = 0.002792 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3653.431714 B =10026.949742 C =13247.418822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.024 3.976 10 C 0.127 3.873 11 N -0.533 5.533 12 C 0.523 3.477 13 O -0.530 6.530 14 C 0.085 3.915 15 N -0.151 5.151 16 N -0.574 5.574 17 C 0.576 3.424 18 O -0.531 6.531 19 C -0.159 4.159 20 C -0.063 4.063 21 C -0.122 4.122 22 C -0.077 4.077 23 C -0.128 4.128 24 C -0.096 4.096 25 C -0.127 4.127 26 C -0.037 4.037 27 C -0.133 4.133 28 C -0.052 4.052 29 C -0.140 4.140 30 C 0.145 3.855 31 H 0.265 0.735 32 H 0.003 0.997 33 H -0.023 1.023 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.410 0.590 37 H 0.137 0.863 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.153 0.847 41 H 0.119 0.881 42 H 0.147 0.853 43 H 0.174 0.826 44 H 0.173 0.827 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.333 -18.625 4.167 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.091 0.909 9 C -0.014 4.014 10 C 0.007 3.993 11 N -0.252 5.252 12 C 0.310 3.690 13 O -0.405 6.405 14 C -0.105 4.105 15 N 0.038 4.962 16 N -0.322 5.322 17 C 0.367 3.633 18 O -0.406 6.406 19 C -0.164 4.164 20 C -0.082 4.082 21 C -0.140 4.140 22 C -0.094 4.094 23 C -0.146 4.146 24 C -0.115 4.115 25 C -0.133 4.133 26 C -0.057 4.057 27 C -0.151 4.151 28 C -0.071 4.071 29 C -0.161 4.161 30 C 0.047 3.953 31 H 0.073 0.927 32 H 0.022 0.978 33 H -0.005 1.005 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.254 0.746 37 H 0.155 0.845 38 H 0.184 0.816 39 H 0.184 0.816 40 H 0.171 0.829 41 H 0.137 0.863 42 H 0.165 0.835 43 H 0.191 0.809 44 H 0.190 0.810 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.511 -19.716 4.760 20.289 hybrid contribution 0.708 2.448 0.489 2.594 sum 1.218 -17.268 5.249 18.089 Atomic orbital electron populations 1.70118 1.08079 1.28021 1.50958 1.26000 0.95687 1.03591 0.94284 0.85368 0.78541 0.77888 0.78794 1.19117 1.21235 1.18514 1.21453 0.93890 0.91125 1.51552 0.90895 1.19211 0.94358 0.92812 0.95035 1.21915 0.94346 0.79088 1.03955 1.45750 1.51797 1.22420 1.05246 1.19421 0.79679 0.85047 0.84890 1.90718 1.57507 1.72544 1.19760 1.23539 0.98690 0.92307 0.95969 1.75225 1.10829 1.19717 0.90479 1.47191 1.56839 1.26873 1.01268 1.18857 0.76595 0.80612 0.87213 1.90730 1.42317 1.30995 1.76598 1.19652 1.07349 1.00066 0.89314 1.21443 0.95522 0.96981 0.94253 1.21570 0.99389 0.99455 0.93562 1.21926 0.93281 0.92155 1.02071 1.21488 1.00185 1.00833 0.92073 1.21537 0.96856 0.95743 0.97330 1.18442 1.08509 0.98808 0.87502 1.20947 0.95330 0.97633 0.91812 1.21501 1.00220 0.98338 0.95059 1.21536 0.93013 0.92110 1.00427 1.20720 1.04635 1.02684 0.88072 1.18703 0.96586 0.91015 0.88979 0.92662 0.97832 1.00505 0.90457 0.87347 0.74587 0.84482 0.81642 0.81571 0.82940 0.86308 0.83482 0.80888 0.80953 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.54 -29.62 9.11 25.60 0.23 -29.39 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.02 1.24 5.30 29.85 0.16 1.40 16 10 C 0.13 5.18 5.71 86.38 0.49 5.68 16 11 N -0.53 -20.44 2.73 -634.57 -1.73 -22.17 16 12 C 0.52 21.08 7.94 86.79 0.69 21.77 16 13 O -0.53 -23.13 15.48 -4.32 -0.07 -23.20 16 14 C 0.08 3.05 7.56 44.37 0.34 3.39 16 15 N -0.15 -5.51 11.19 -43.99 -0.49 -6.00 16 16 N -0.57 -20.05 6.20 -175.70 -1.09 -21.14 16 17 C 0.58 19.14 7.89 86.75 0.68 19.82 16 18 O -0.53 -20.12 16.68 -3.83 -0.06 -20.19 16 19 C -0.16 -4.16 5.87 -20.09 -0.12 -4.28 16 20 C -0.06 -1.31 9.60 22.54 0.22 -1.09 16 21 C -0.12 -1.67 10.03 22.23 0.22 -1.45 16 22 C -0.08 -0.95 10.04 22.34 0.22 -0.73 16 23 C -0.13 -2.14 10.03 22.23 0.22 -1.92 16 24 C -0.10 -2.22 9.54 22.54 0.22 -2.00 16 25 C -0.13 -3.89 6.34 -20.01 -0.13 -4.02 16 26 C -0.04 -0.83 10.09 22.42 0.23 -0.60 16 27 C -0.13 -2.14 10.05 22.28 0.22 -1.92 16 28 C -0.05 -0.89 10.01 22.27 0.22 -0.67 16 29 C -0.14 -3.55 9.79 22.42 0.22 -3.33 16 30 C 0.14 4.67 6.73 38.64 0.26 4.93 16 31 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 33 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 34 H 0.08 3.22 7.97 -2.38 -0.02 3.20 16 35 H 0.11 3.78 7.75 -2.38 -0.02 3.77 16 36 H 0.41 14.05 4.31 -213.33 -0.92 13.13 16 37 H 0.14 2.80 7.65 -2.91 -0.02 2.78 16 38 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 40 H 0.15 1.89 8.06 -2.92 -0.02 1.87 16 41 H 0.12 2.94 6.41 -2.91 -0.02 2.92 16 42 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 43 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 44 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 45 H 0.14 3.40 7.80 -2.91 -0.02 3.38 16 Total: -1.00 -78.67 396.07 4.06 -74.61 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.13 Total: 22.94 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 5.06 Total: 6.20 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -3.03 Total: -105.30 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -0.13 Total: -43.38 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -78.67 4.06 -74.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012354466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.902 kcal (2) G-P(sol) polarization free energy of solvation -78.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds