Wall clock time and date at job start Tue Mar 31 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86798 * 120.00273 * 2 1 4 4 H 1.48500 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47019 * 299.99752 * 3 2 1 6 6 H 1.48503 * 109.47017 * 60.00097 * 3 2 1 7 7 C 1.39981 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.39454 * 119.99853 * 0.02562 * 7 2 1 10 10 O 1.22129 * 120.00046 * 359.97438 * 9 7 2 11 11 N 1.34784 * 119.99628 * 179.97438 * 9 7 2 12 12 N 1.40103 * 119.99411 * 179.97438 * 11 9 7 13 13 C 1.31476 * 119.99693 * 180.02562 * 12 11 9 14 14 C 1.40671 * 119.99982 * 179.97438 * 13 12 11 15 15 C 1.39523 * 126.13361 * 179.97438 * 14 13 12 16 16 C 1.39413 * 106.52555 * 180.02562 * 15 14 13 17 17 Br 1.89107 * 126.36321 * 180.02562 * 16 15 14 18 18 C 1.36452 * 107.27299 * 359.97438 * 16 15 14 19 19 Br 1.89100 * 125.46103 * 180.02562 * 18 16 15 20 20 O 1.34094 * 109.07185 * 0.26807 * 18 16 15 21 21 H 0.96999 * 119.99899 * 0.02562 * 1 2 3 22 22 H 0.96993 * 120.00418 * 0.02562 * 11 9 7 23 23 H 1.08003 * 120.00032 * 0.02562 * 13 12 11 24 24 H 1.08001 * 126.74244 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8828 2.3963 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0073 -1.2123 0.0005 8 1 3.0872 -1.2124 0.0001 9 6 1.3099 -2.4200 0.0005 10 8 0.0887 -2.4199 0.0005 11 7 1.9839 -3.5872 0.0005 12 7 1.2832 -4.8005 0.0011 13 6 1.9406 -5.9391 0.0016 14 6 1.2372 -7.1573 0.0027 15 6 1.8016 -8.4333 0.0028 16 6 0.7398 -9.3367 0.0034 17 35 0.8725 -11.2231 0.0046 18 6 -0.4131 -8.6068 0.0043 19 35 -2.1639 -9.3213 0.0060 20 8 -0.1054 -7.3016 -0.0018 21 1 -0.4850 0.8400 -0.0004 22 1 2.9538 -3.5873 0.0009 23 1 3.0206 -5.9392 0.0020 24 1 2.8545 -8.6740 0.0017 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012406539.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:02 Heat of formation + Delta-G solvation = 5.128028 kcal Electronic energy + Delta-G solvation = -15462.894292 eV Core-core repulsion = 12278.124497 eV Total energy + Delta-G solvation = -3184.769795 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 363.884 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.78729 -39.71673 -37.25365 -35.05347 -34.78923 -33.83899 -32.67800 -31.61114 -29.80063 -28.26978 -24.75293 -23.07822 -22.27413 -21.19074 -19.73825 -18.21162 -17.79647 -17.70021 -17.54113 -16.18429 -15.61487 -15.25885 -14.81267 -14.42945 -14.31126 -14.09015 -13.46507 -13.28065 -12.95858 -12.77377 -12.73792 -12.21067 -11.97722 -11.89627 -11.36937 -11.29694 -11.06133 -10.76324 -10.20450 -10.04752 -8.90478 -8.46297 -7.16145 -0.47354 -0.38539 0.31684 0.64305 1.38748 1.39887 1.60061 1.77260 1.90234 2.12545 2.30403 2.39739 3.48356 3.61075 3.81596 4.11729 4.17847 4.54563 4.79752 5.01468 5.15655 5.56748 5.77449 5.95628 6.63766 6.76283 7.35173 8.35934 8.53302 Molecular weight = 363.88amu Principal moments of inertia in cm(-1) A = 0.025845 B = 0.002400 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.133627 B =11665.745735 C =12739.035749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.029 3.971 3 Si 1.011 2.989 4 H -0.239 1.239 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.101 0.899 9 C 0.538 3.462 10 O -0.618 6.618 11 N -0.580 5.580 12 N -0.242 5.242 13 C 0.071 3.929 14 C 0.053 3.947 15 C -0.122 4.122 16 C -0.135 4.135 17 Br 0.029 6.971 18 C -0.018 4.018 19 Br 0.078 6.922 20 O -0.154 6.154 21 H 0.282 0.718 22 H 0.392 0.608 23 H 0.193 0.807 24 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.681 -23.876 0.014 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.190 4.190 3 Si 0.829 3.171 4 H -0.162 1.162 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.119 0.881 9 C 0.349 3.651 10 O -0.503 6.503 11 N -0.327 5.327 12 N -0.054 5.054 13 C -0.136 4.136 14 C -0.001 4.001 15 C -0.148 4.148 16 C -0.219 4.219 17 Br 0.114 6.886 18 C -0.152 4.152 19 Br 0.162 6.838 20 O -0.048 6.048 21 H 0.093 0.907 22 H 0.231 0.769 23 H 0.209 0.791 24 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.997 -23.858 0.012 24.046 hybrid contribution 1.337 0.970 -0.002 1.652 sum 4.334 -22.888 0.010 23.295 Atomic orbital electron populations 1.70263 1.10096 1.29874 1.32369 1.27177 0.95510 1.05571 0.90761 0.84775 0.79480 0.74077 0.78771 1.16155 1.19094 1.19104 1.20079 0.96215 0.89941 1.52594 0.88055 1.16994 0.87505 0.82242 0.78379 1.90735 1.15901 1.86597 1.57100 1.47380 1.08181 1.01227 1.75927 1.75423 1.29267 0.93767 1.06919 1.22591 0.99135 0.87079 1.04746 1.19913 0.78623 0.94761 1.06821 1.22474 1.01464 0.86746 1.04078 1.22107 0.93286 0.94355 1.12196 1.96716 1.98430 0.95744 1.97748 1.24777 0.95030 0.82793 1.12647 1.96867 1.10620 1.78807 1.97487 1.84399 1.25895 1.25141 1.69393 0.90747 0.76893 0.79078 0.76906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.82 11.68 21.83 0.25 -47.57 14 2 C 0.03 1.54 5.49 85.28 0.47 2.01 14 3 Si 1.01 38.21 29.56 68.60 2.03 40.24 14 4 H -0.24 -8.10 7.11 99.48 0.71 -7.40 14 5 H -0.27 -9.71 7.11 99.48 0.71 -9.00 14 6 H -0.27 -9.71 7.11 99.48 0.71 -9.01 14 7 C -0.55 -30.05 9.19 22.99 0.21 -29.84 14 8 H 0.10 4.71 7.85 -2.91 -0.02 4.68 14 9 C 0.54 31.81 7.61 84.53 0.64 32.46 14 10 O -0.62 -43.45 15.16 -5.74 -0.09 -43.54 14 11 N -0.58 -27.15 6.26 -181.21 -1.13 -28.28 14 12 N -0.24 -10.89 11.04 -56.15 -0.62 -11.51 14 13 C 0.07 2.18 10.72 85.34 0.91 3.09 14 14 C 0.05 1.55 6.97 23.17 0.16 1.72 14 15 C -0.12 -2.53 10.92 22.86 0.25 -2.28 14 16 C -0.14 -3.10 6.58 22.14 0.15 -2.95 14 17 Br 0.03 0.52 33.77 -20.37 -0.69 -0.17 14 18 C -0.02 -0.49 7.82 67.40 0.53 0.03 14 19 Br 0.08 1.86 33.77 -20.37 -0.69 1.17 14 20 O -0.15 -5.37 10.63 -7.81 -0.08 -5.46 14 21 H 0.28 15.05 8.29 -92.71 -0.77 14.29 14 22 H 0.39 14.34 8.62 -213.33 -1.84 12.51 14 23 H 0.19 3.77 8.04 -2.91 -0.02 3.74 14 24 H 0.21 2.47 8.06 -2.91 -0.02 2.45 14 Total: -1.00 -80.36 279.33 1.75 -78.62 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -0.56 Total: 12.26 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 3.32 Total: 4.24 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -1.50 Total: -87.36 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -0.17 Total: -49.00 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Atomic # 35 Polarization: 2.37 SS G_CDS: -1.38 Total: 1.00 kcal Total: -80.36 1.75 -78.62 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012406539.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.744 kcal (2) G-P(sol) polarization free energy of solvation -80.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds