Wall clock time and date at job start Tue Mar 31 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38355 * 119.85325 * 2 1 4 4 C 1.37966 * 120.14502 * 179.72092 * 3 2 1 5 5 C 1.39577 * 119.84996 * 0.25982 * 4 3 2 6 6 C 1.47846 * 120.14082 * 180.02562 * 5 4 3 7 7 O 1.21549 * 120.00112 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99552 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99580 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47764 * 34.99336 * 9 8 6 11 11 C 1.52999 * 109.46998 * 274.99262 * 9 8 6 12 12 C 1.50700 * 109.47031 * 154.99550 * 9 8 6 13 13 N 1.30117 * 124.95099 * 45.02431 * 12 9 8 14 14 C 1.35783 * 109.64229 * 179.97438 * 13 12 9 15 15 C 1.39746 * 133.60341 * 180.02562 * 14 13 12 16 16 C 1.36597 * 119.88642 * 180.02562 * 15 14 13 17 17 C 1.38782 * 120.67399 * 359.95608 * 16 15 14 18 18 C 1.37853 * 120.44384 * 0.02641 * 17 16 15 19 19 C 1.38829 * 119.69428 * 359.97438 * 18 17 16 20 20 N 1.36038 * 124.94955 * 224.71424 * 12 9 8 21 21 C 1.46500 * 126.34702 * 0.02562 * 20 12 9 22 22 C 1.50698 * 109.47264 * 89.99846 * 21 20 12 23 23 H 1.08003 * 120.00132 * 359.97438 * 22 21 20 24 24 C 1.37875 * 120.00188 * 179.97438 * 22 21 20 25 25 N 1.31515 * 119.99876 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00372 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46644 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.46910 * 119.99864 * 26 24 22 29 29 H 1.48497 * 109.47078 * 240.00214 * 26 24 22 30 30 C 1.39579 * 119.71204 * 0.02562 * 5 4 3 31 31 C 1.37958 * 119.85462 * 359.97438 * 30 5 4 32 32 H 1.09001 * 109.47197 * 89.99647 * 1 2 3 33 33 H 1.09001 * 109.46979 * 209.99263 * 1 2 3 34 34 H 1.08997 * 109.47378 * 329.99924 * 1 2 3 35 35 H 1.08002 * 119.93063 * 0.02562 * 3 2 1 36 36 H 1.07999 * 120.07381 * 180.27857 * 4 3 2 37 37 H 0.97000 * 120.00461 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.47621 * 180.02562 * 11 9 8 39 39 H 1.09004 * 109.47306 * 300.00240 * 11 9 8 40 40 H 1.09005 * 109.46921 * 60.00056 * 11 9 8 41 41 H 1.07996 * 120.05227 * 359.95754 * 15 14 13 42 42 H 1.08002 * 119.66591 * 179.97438 * 16 15 14 43 43 H 1.07999 * 119.77634 * 180.02562 * 17 16 15 44 44 H 1.08010 * 120.15236 * 179.97438 * 18 17 16 45 45 H 1.09001 * 109.46637 * 209.99180 * 21 20 12 46 46 H 1.08998 * 109.47107 * 329.99559 * 21 20 12 47 47 H 0.97005 * 120.00323 * 179.97438 * 25 24 22 48 48 H 1.07996 * 120.06809 * 179.97438 * 30 5 4 49 49 H 1.08000 * 119.92739 * 180.02562 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 0.0058 5 6 4.2762 0.0000 0.0062 6 6 5.7547 0.0000 0.0130 7 8 6.3624 1.0526 0.0187 8 7 6.4285 -1.1672 0.0128 9 6 7.8935 -1.1672 0.0201 10 1 8.2540 -0.3272 0.6137 11 6 8.4106 -1.0373 -1.4140 12 6 8.3929 -2.4566 0.6193 13 7 7.9321 -3.6393 0.3330 14 6 8.6043 -4.5768 1.0492 15 6 8.5225 -5.9695 1.1302 16 6 9.3580 -6.6529 1.9673 17 6 10.2920 -5.9783 2.7410 18 6 10.3909 -4.6048 2.6770 19 6 9.5500 -3.8934 1.8320 20 7 9.3951 -2.5543 1.5339 21 6 10.1651 -1.4439 2.1002 22 6 9.4813 -0.9422 3.3458 23 1 8.5646 -1.4039 3.6819 24 6 10.0259 0.1063 4.0565 25 7 11.1425 0.6682 3.6475 26 14 9.1780 0.7287 5.6002 27 1 7.9481 -0.0668 5.8443 28 1 10.0955 0.5890 6.7595 29 1 8.8167 2.1583 5.4243 30 6 3.5753 -1.2070 0.0002 31 6 2.1957 -1.2000 -0.0056 32 1 -0.3634 0.0001 -1.0277 33 1 -0.3633 -0.8901 0.5137 34 1 -0.3634 0.8899 0.5138 35 1 1.6522 2.1332 0.0004 36 1 4.1118 2.1443 0.0103 37 1 5.9435 -2.0073 0.0087 38 1 9.5006 -1.0378 -1.4087 39 1 8.0502 -1.8774 -2.0077 40 1 8.0494 -0.1047 -1.8474 41 1 7.7990 -6.5044 0.5329 42 1 9.2914 -7.7291 2.0274 43 1 10.9458 -6.5331 3.3976 44 1 11.1192 -4.0845 3.2816 45 1 11.1687 -1.7881 2.3502 46 1 10.2289 -0.6367 1.3705 47 1 11.5255 1.4061 4.1473 48 1 4.1118 -2.1443 0.0000 49 1 1.6522 -2.1333 -0.0099 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012532096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:33 Heat of formation + Delta-G solvation = 49.416102 kcal Electronic energy + Delta-G solvation = -31846.248985 eV Core-core repulsion = 27738.171776 eV Total energy + Delta-G solvation = -4108.077209 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.65792 -40.15389 -38.55744 -37.05839 -35.09629 -34.17317 -33.14761 -32.38365 -31.33334 -30.55133 -29.90173 -28.35594 -27.43389 -27.26288 -24.32137 -23.44940 -22.78234 -22.57293 -21.66128 -21.04783 -20.10270 -19.40901 -18.01775 -16.94870 -16.80415 -16.19021 -16.04891 -15.54187 -15.23458 -14.96437 -14.87686 -14.59764 -14.53789 -14.38912 -13.92673 -13.71906 -13.62664 -13.43014 -13.36233 -13.12701 -12.71111 -12.55313 -12.48914 -12.03453 -11.98174 -11.90268 -11.74495 -11.57472 -11.48487 -11.17166 -11.09447 -11.02303 -10.91148 -10.84163 -10.34171 -10.21334 -9.79692 -9.48167 -9.37963 -9.12582 -9.02596 -8.77278 -8.73115 -7.77939 -7.54622 -6.35599 -4.44919 0.76869 1.24862 1.39778 2.03973 2.88660 2.99033 3.16378 3.24799 3.29557 3.38996 3.65122 3.82563 4.22944 4.34321 4.40124 4.58123 4.61201 4.78297 4.91565 4.98515 5.00596 5.08514 5.22378 5.30844 5.34846 5.42324 5.43989 5.48074 5.53800 5.55496 5.76568 5.80042 5.86633 5.87168 5.91183 5.98840 6.06015 6.14921 6.18549 6.29418 6.35739 6.36474 6.39408 6.58068 6.74006 6.76437 6.82514 6.91148 7.03793 7.25336 7.36938 7.55433 7.67661 7.74117 7.84444 8.35033 8.42737 8.61301 9.24010 10.71947 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.007372 B = 0.003353 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3797.009953 B = 8348.408778 C =10439.493604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.131 4.131 4 C -0.055 4.055 5 C -0.133 4.133 6 C 0.559 3.441 7 O -0.531 6.531 8 N -0.708 5.708 9 C 0.227 3.773 10 H 0.120 0.880 11 C -0.153 4.153 12 C 0.271 3.729 13 N -0.509 5.509 14 C 0.039 3.961 15 C -0.074 4.074 16 C -0.136 4.136 17 C -0.121 4.121 18 C -0.091 4.091 19 C 0.057 3.943 20 N -0.446 5.446 21 C 0.234 3.766 22 C -0.544 4.544 23 H 0.064 0.936 24 C 0.071 3.929 25 N -0.886 5.886 26 Si 0.903 3.097 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.278 1.278 30 C -0.080 4.080 31 C -0.129 4.129 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.406 0.594 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.269 0.731 48 H 0.129 0.871 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.896 -6.170 -7.990 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.149 4.149 4 C -0.074 4.074 5 C -0.136 4.136 6 C 0.346 3.654 7 O -0.408 6.408 8 N -0.361 5.361 9 C 0.120 3.880 10 H 0.138 0.862 11 C -0.212 4.212 12 C 0.005 3.995 13 N -0.231 5.231 14 C -0.081 4.081 15 C -0.093 4.093 16 C -0.157 4.157 17 C -0.141 4.141 18 C -0.112 4.112 19 C -0.056 4.056 20 N -0.130 5.130 21 C 0.116 3.884 22 C -0.582 4.582 23 H 0.082 0.918 24 C -0.133 4.133 25 N -0.523 5.523 26 Si 0.730 3.270 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.204 1.204 30 C -0.099 4.099 31 C -0.147 4.147 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.243 0.757 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.146 0.854 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.831 -5.281 -8.436 17.040 hybrid contribution 0.219 0.150 1.614 1.635 sum -13.612 -5.131 -6.823 16.068 Atomic orbital electron populations 1.20850 0.90998 1.03038 1.02512 1.20137 0.96266 0.93225 0.97027 1.21021 0.93833 0.97780 1.02293 1.21297 0.93806 0.97871 0.94454 1.19952 0.92784 0.94502 1.06371 1.18237 0.87064 0.83751 0.76374 1.90798 1.69646 1.30969 1.49408 1.45787 1.06349 1.08981 1.74939 1.19191 0.79732 0.91991 0.97044 0.86231 1.22115 1.01683 1.02838 0.94593 1.23106 0.89759 0.94991 0.91649 1.70173 1.28616 0.97235 1.27097 1.19034 0.96776 0.93990 0.98318 1.19816 0.99787 0.90178 0.99556 1.20477 0.97459 0.99298 0.98469 1.20750 0.99728 0.93034 1.00581 1.20091 0.99177 0.93500 0.98405 1.18936 1.00983 0.84371 1.01291 1.45946 1.28682 1.06606 1.31740 1.19828 0.91536 0.82097 0.94964 1.21263 1.10310 1.17665 1.09004 0.91776 1.24902 0.94750 0.95627 0.98059 1.69912 1.18832 1.23833 1.39696 0.86333 0.79621 0.78995 0.82032 1.19559 1.20533 1.20374 1.21375 0.94550 0.97255 0.96675 1.20970 0.93826 0.97798 1.02144 0.90879 0.91312 0.91326 0.85449 0.84495 0.75717 0.91288 0.91590 0.91052 0.86255 0.86227 0.86004 0.85833 0.93188 0.92982 0.92132 0.85358 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.00 36.01 0.36 -0.41 16 2 C -0.07 -0.63 5.89 -104.53 -0.62 -1.25 16 3 C -0.13 -1.36 9.68 -39.64 -0.38 -1.75 16 4 C -0.06 -0.71 9.60 -39.18 -0.38 -1.09 16 5 C -0.13 -1.87 5.87 -104.97 -0.62 -2.49 16 6 C 0.56 9.53 7.74 -12.33 -0.10 9.43 16 7 O -0.53 -10.80 16.01 5.32 0.09 -10.72 16 8 N -0.71 -11.63 5.02 -55.88 -0.28 -11.91 16 9 C 0.23 4.16 2.82 -69.08 -0.19 3.97 16 10 H 0.12 2.57 6.46 -51.93 -0.34 2.23 16 11 C -0.15 -2.40 9.47 37.16 0.35 -2.05 16 12 C 0.27 5.44 6.68 -154.82 -1.03 4.41 16 13 N -0.51 -9.89 10.90 -8.23 -0.09 -9.98 16 14 C 0.04 0.77 7.23 -84.70 -0.61 0.15 16 15 C -0.07 -1.18 10.05 -39.61 -0.40 -1.58 16 16 C -0.14 -1.94 9.96 -39.97 -0.40 -2.33 16 17 C -0.12 -1.82 10.03 -39.52 -0.40 -2.22 16 18 C -0.09 -1.68 10.05 -39.50 -0.40 -2.08 16 19 C 0.06 1.18 6.87 -83.99 -0.58 0.60 16 20 N -0.45 -9.79 2.79 -112.43 -0.31 -10.10 16 21 C 0.23 5.68 5.45 -5.19 -0.03 5.66 16 22 C -0.54 -14.55 9.39 -34.44 -0.32 -14.88 16 23 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 24 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 25 N -0.89 -24.49 13.29 55.43 0.74 -23.75 16 26 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 C -0.08 -0.94 9.54 -39.18 -0.37 -1.31 16 31 C -0.13 -1.29 9.68 -39.64 -0.38 -1.67 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.14 1.79 7.65 -52.49 -0.40 1.39 16 37 H 0.41 6.01 6.33 -40.82 -0.26 5.75 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 44 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 45 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.05 1.30 7.29 -51.93 -0.38 0.92 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.13 1.35 6.40 -52.49 -0.34 1.01 16 49 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 415.80 15.07 6.27 6.27 Total: -1.00 -31.14 415.80 -11.95 -43.09 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.75 Total: 9.99 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -6.59 Total: -9.06 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.05 Total: -55.74 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.14 -11.95 -43.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012532096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.506 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds