Wall clock time and date at job start Tue Mar 31 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38355 * 119.85325 * 2 1 4 4 C 1.37966 * 120.14502 * 179.72092 * 3 2 1 5 5 C 1.39577 * 119.84996 * 0.25982 * 4 3 2 6 6 C 1.47846 * 120.14082 * 180.02562 * 5 4 3 7 7 O 1.21549 * 120.00112 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99552 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99580 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47764 * 34.99336 * 9 8 6 11 11 C 1.52999 * 109.46998 * 274.99262 * 9 8 6 12 12 C 1.50700 * 109.47031 * 154.99550 * 9 8 6 13 13 N 1.30117 * 124.95099 * 45.02431 * 12 9 8 14 14 C 1.35783 * 109.64229 * 179.97438 * 13 12 9 15 15 C 1.39746 * 133.60341 * 180.02562 * 14 13 12 16 16 C 1.36597 * 119.88642 * 180.02562 * 15 14 13 17 17 C 1.38782 * 120.67399 * 359.95608 * 16 15 14 18 18 C 1.37853 * 120.44384 * 0.02641 * 17 16 15 19 19 C 1.38829 * 119.69428 * 359.97438 * 18 17 16 20 20 N 1.36038 * 124.94955 * 224.71424 * 12 9 8 21 21 C 1.46500 * 126.34702 * 0.02562 * 20 12 9 22 22 C 1.50698 * 109.47264 * 89.99846 * 21 20 12 23 23 H 1.08003 * 120.00132 * 359.97438 * 22 21 20 24 24 C 1.37875 * 120.00188 * 179.97438 * 22 21 20 25 25 N 1.31515 * 119.99876 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00372 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46644 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.46910 * 119.99864 * 26 24 22 29 29 H 1.48497 * 109.47078 * 240.00214 * 26 24 22 30 30 C 1.39579 * 119.71204 * 0.02562 * 5 4 3 31 31 C 1.37958 * 119.85462 * 359.97438 * 30 5 4 32 32 H 1.09001 * 109.47197 * 89.99647 * 1 2 3 33 33 H 1.09001 * 109.46979 * 209.99263 * 1 2 3 34 34 H 1.08997 * 109.47378 * 329.99924 * 1 2 3 35 35 H 1.08002 * 119.93063 * 0.02562 * 3 2 1 36 36 H 1.07999 * 120.07381 * 180.27857 * 4 3 2 37 37 H 0.97000 * 120.00461 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.47621 * 180.02562 * 11 9 8 39 39 H 1.09004 * 109.47306 * 300.00240 * 11 9 8 40 40 H 1.09005 * 109.46921 * 60.00056 * 11 9 8 41 41 H 1.07996 * 120.05227 * 359.95754 * 15 14 13 42 42 H 1.08002 * 119.66591 * 179.97438 * 16 15 14 43 43 H 1.07999 * 119.77634 * 180.02562 * 17 16 15 44 44 H 1.08010 * 120.15236 * 179.97438 * 18 17 16 45 45 H 1.09001 * 109.46637 * 209.99180 * 21 20 12 46 46 H 1.08998 * 109.47107 * 329.99559 * 21 20 12 47 47 H 0.97005 * 120.00323 * 179.97438 * 25 24 22 48 48 H 1.07996 * 120.06809 * 179.97438 * 30 5 4 49 49 H 1.08000 * 119.92739 * 180.02562 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 0.0058 5 6 4.2762 0.0000 0.0062 6 6 5.7547 0.0000 0.0130 7 8 6.3624 1.0526 0.0187 8 7 6.4285 -1.1672 0.0128 9 6 7.8935 -1.1672 0.0201 10 1 8.2540 -0.3272 0.6137 11 6 8.4106 -1.0373 -1.4140 12 6 8.3929 -2.4566 0.6193 13 7 7.9321 -3.6393 0.3330 14 6 8.6043 -4.5768 1.0492 15 6 8.5225 -5.9695 1.1302 16 6 9.3580 -6.6529 1.9673 17 6 10.2920 -5.9783 2.7410 18 6 10.3909 -4.6048 2.6770 19 6 9.5500 -3.8934 1.8320 20 7 9.3951 -2.5543 1.5339 21 6 10.1651 -1.4439 2.1002 22 6 9.4813 -0.9422 3.3458 23 1 8.5646 -1.4039 3.6819 24 6 10.0259 0.1063 4.0565 25 7 11.1425 0.6682 3.6475 26 14 9.1780 0.7287 5.6002 27 1 7.9481 -0.0668 5.8443 28 1 10.0955 0.5890 6.7595 29 1 8.8167 2.1583 5.4243 30 6 3.5753 -1.2070 0.0002 31 6 2.1957 -1.2000 -0.0056 32 1 -0.3634 0.0001 -1.0277 33 1 -0.3633 -0.8901 0.5137 34 1 -0.3634 0.8899 0.5138 35 1 1.6522 2.1332 0.0004 36 1 4.1118 2.1443 0.0103 37 1 5.9435 -2.0073 0.0087 38 1 9.5006 -1.0378 -1.4087 39 1 8.0502 -1.8774 -2.0077 40 1 8.0494 -0.1047 -1.8474 41 1 7.7990 -6.5044 0.5329 42 1 9.2914 -7.7291 2.0274 43 1 10.9458 -6.5331 3.3976 44 1 11.1192 -4.0845 3.2816 45 1 11.1687 -1.7881 2.3502 46 1 10.2289 -0.6367 1.3705 47 1 11.5255 1.4061 4.1473 48 1 4.1118 -2.1443 0.0000 49 1 1.6522 -2.1333 -0.0099 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012532096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:32 Heat of formation + Delta-G solvation = 33.472892 kcal Electronic energy + Delta-G solvation = -31846.940335 eV Core-core repulsion = 27738.171776 eV Total energy + Delta-G solvation = -4108.768559 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.15705 -41.33057 -39.62097 -38.40969 -36.55854 -35.97610 -34.23713 -34.05842 -32.36304 -31.67146 -31.32481 -29.72400 -29.14064 -28.25371 -25.65449 -25.37889 -23.70569 -23.61741 -23.05182 -22.35975 -21.31851 -20.90673 -19.26365 -18.94591 -18.23927 -17.79666 -17.34907 -16.61337 -16.56343 -16.37531 -16.19594 -16.02988 -15.78427 -15.62024 -15.06250 -14.89115 -14.68796 -14.64248 -14.58273 -14.44425 -14.33745 -14.00633 -13.80415 -13.29942 -13.26015 -13.00985 -12.91268 -12.86195 -12.76395 -12.60116 -12.57196 -12.49090 -12.39909 -12.15122 -12.00700 -11.96024 -11.16989 -11.11510 -11.02190 -10.80444 -10.41949 -9.99254 -9.68432 -9.22030 -8.99187 -8.43136 -6.61155 -0.20095 0.02047 0.38522 0.69139 1.27051 1.29582 1.39952 1.52619 1.77448 1.85804 2.16315 2.29707 2.82161 2.87397 2.94373 2.99085 3.50923 3.59751 3.81428 3.96904 3.98980 4.01408 4.04514 4.15290 4.21847 4.30368 4.36246 4.41263 4.47656 4.56750 4.59656 4.70158 4.74492 4.76559 4.80010 4.86473 4.88260 4.95725 5.04014 5.05824 5.19475 5.23066 5.32024 5.35116 5.37401 5.42578 5.57378 5.63155 5.64547 5.68604 5.73921 5.93462 6.04548 6.15091 6.38534 6.50251 6.86692 7.05739 7.11087 8.63067 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.007372 B = 0.003353 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3797.009953 B = 8348.408778 C =10439.493604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.132 4.132 4 C -0.072 4.072 5 C -0.161 4.161 6 C 0.555 3.445 7 O -0.576 6.576 8 N -0.700 5.700 9 C 0.230 3.770 10 H 0.079 0.921 11 C -0.141 4.141 12 C 0.258 3.742 13 N -0.500 5.500 14 C 0.016 3.984 15 C -0.074 4.074 16 C -0.121 4.121 17 C -0.099 4.099 18 C -0.125 4.125 19 C 0.023 3.977 20 N -0.464 5.464 21 C 0.255 3.745 22 C -0.555 4.555 23 H 0.046 0.954 24 C 0.028 3.972 25 N -0.911 5.911 26 Si 0.962 3.038 27 H -0.275 1.275 28 H -0.264 1.264 29 H -0.274 1.274 30 C -0.082 4.082 31 C -0.129 4.129 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.152 0.848 36 H 0.123 0.877 37 H 0.415 0.585 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.148 0.852 42 H 0.169 0.831 43 H 0.159 0.841 44 H 0.110 0.890 45 H 0.033 0.967 46 H 0.035 0.965 47 H 0.274 0.726 48 H 0.136 0.864 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.676 -9.200 -7.701 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.149 4.149 4 C -0.091 4.091 5 C -0.164 4.164 6 C 0.345 3.655 7 O -0.457 6.457 8 N -0.353 5.353 9 C 0.123 3.877 10 H 0.097 0.903 11 C -0.200 4.200 12 C -0.008 4.008 13 N -0.222 5.222 14 C -0.104 4.104 15 C -0.094 4.094 16 C -0.141 4.141 17 C -0.118 4.118 18 C -0.146 4.146 19 C -0.088 4.088 20 N -0.150 5.150 21 C 0.135 3.865 22 C -0.593 4.593 23 H 0.064 0.936 24 C -0.174 4.174 25 N -0.549 5.549 26 Si 0.786 3.214 27 H -0.200 1.200 28 H -0.189 1.189 29 H -0.200 1.200 30 C -0.101 4.101 31 C -0.147 4.147 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.170 0.830 36 H 0.141 0.859 37 H 0.253 0.747 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.165 0.835 42 H 0.186 0.814 43 H 0.177 0.823 44 H 0.128 0.872 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.154 0.846 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.627 -8.369 -8.158 20.324 hybrid contribution 1.026 0.922 1.528 2.059 sum -15.601 -7.448 -6.630 18.515 Atomic orbital electron populations 1.20938 0.88278 1.04259 1.03786 1.20592 0.98179 0.92548 0.94519 1.21304 0.92651 0.99532 1.01455 1.21351 0.95169 0.97008 0.95561 1.19814 0.90682 0.96175 1.09696 1.18834 0.88537 0.83025 0.75151 1.90757 1.70863 1.32371 1.51715 1.45711 1.05494 1.09423 1.74634 1.19017 0.80919 0.90040 0.97718 0.90294 1.22020 1.01478 1.03500 0.93019 1.23319 0.89843 0.95720 0.91869 1.70152 1.28222 0.96950 1.26892 1.19560 0.96819 0.95464 0.98556 1.20278 1.00536 0.88609 0.99943 1.21031 0.95351 1.01537 0.96197 1.21254 0.99328 0.91524 0.99734 1.20288 0.99782 0.95230 0.99310 1.19456 1.02578 0.83899 1.02820 1.45782 1.29542 1.06743 1.32939 1.19281 0.90911 0.82518 0.93776 1.21354 1.09808 1.18046 1.10084 0.93606 1.25661 0.95324 0.95644 1.00794 1.69986 1.19795 1.24262 1.40878 0.85439 0.78630 0.78277 0.79032 1.19969 1.18853 1.19964 1.21512 0.95617 0.96503 0.96431 1.21344 0.93001 0.99387 1.00925 0.89372 0.89994 0.90300 0.83013 0.85908 0.74708 0.91475 0.90062 0.90868 0.83471 0.81381 0.82306 0.87165 0.94853 0.94692 0.91663 0.84586 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.00 71.24 0.71 -0.36 16 2 C -0.06 -0.96 5.89 -19.81 -0.12 -1.07 16 3 C -0.13 -2.56 9.68 22.23 0.22 -2.35 16 4 C -0.07 -1.92 9.60 22.53 0.22 -1.71 16 5 C -0.16 -4.71 5.87 -20.09 -0.12 -4.83 16 6 C 0.55 20.41 7.74 86.79 0.67 21.08 16 7 O -0.58 -25.67 16.01 -3.87 -0.06 -25.73 16 8 N -0.70 -24.54 5.02 -448.98 -2.25 -26.79 16 9 C 0.23 9.15 2.82 44.24 0.12 9.28 16 10 H 0.08 3.79 6.46 -2.39 -0.02 3.77 16 11 C -0.14 -4.72 9.47 71.98 0.68 -4.04 16 12 C 0.26 10.96 6.68 137.92 0.92 11.88 16 13 N -0.50 -19.72 10.90 -179.96 -1.96 -21.69 16 14 C 0.02 0.61 7.23 39.45 0.29 0.89 16 15 C -0.07 -2.16 10.05 22.25 0.22 -1.93 16 16 C -0.12 -2.90 9.96 22.02 0.22 -2.68 16 17 C -0.10 -2.69 10.03 22.31 0.22 -2.47 16 18 C -0.13 -4.66 10.05 22.32 0.22 -4.43 16 19 C 0.02 1.00 6.87 38.86 0.27 1.26 16 20 N -0.46 -21.76 2.79 -509.63 -1.42 -23.18 16 21 C 0.26 13.41 5.45 85.63 0.47 13.88 16 22 C -0.55 -31.52 9.39 25.60 0.24 -31.28 16 23 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 24 C 0.03 1.55 5.46 84.65 0.46 2.02 16 25 N -0.91 -52.43 13.29 21.45 0.28 -52.15 16 26 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 27 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 28 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 29 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 30 C -0.08 -1.88 9.54 22.53 0.21 -1.66 16 31 C -0.13 -2.26 9.68 22.23 0.22 -2.04 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 34 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 35 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.12 3.51 7.65 -2.91 -0.02 3.49 16 37 H 0.41 12.77 6.33 -92.71 -0.59 12.19 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 40 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 43 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 44 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 45 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.04 1.92 7.29 -2.39 -0.02 1.90 16 47 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 48 H 0.14 2.78 6.40 -2.91 -0.02 2.76 16 49 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -73.07 415.80 3.35 -69.72 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.39 Total: 33.68 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 6.35 Total: -0.57 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -5.35 Total: -123.81 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.73 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -73.07 3.35 -69.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012532096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.191 kcal (2) G-P(sol) polarization free energy of solvation -73.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds