Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38360 * 119.85722 * 2 1 4 4 C 1.37957 * 120.14867 * 180.02562 * 3 2 1 5 5 C 1.39580 * 119.84844 * 359.97438 * 4 3 2 6 6 C 1.47852 * 120.13788 * 179.97438 * 5 4 3 7 7 O 1.21541 * 120.00266 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99541 * 180.02562 * 6 5 4 9 9 C 1.46495 * 119.99771 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47259 * 324.98846 * 9 8 6 11 11 C 1.52998 * 109.47793 * 84.99589 * 9 8 6 12 12 C 1.50703 * 109.46882 * 204.99447 * 9 8 6 13 13 N 1.30105 * 124.95136 * 314.97326 * 12 9 8 14 14 C 1.35790 * 109.64670 * 179.73712 * 13 12 9 15 15 C 1.39735 * 133.59667 * 179.47614 * 14 13 12 16 16 C 1.36603 * 119.88474 * 180.48799 * 15 14 13 17 17 C 1.38782 * 120.66847 * 0.26358 * 16 15 14 18 18 C 1.37848 * 120.45006 * 0.04028 * 17 16 15 19 19 C 1.38834 * 119.69217 * 359.97438 * 18 17 16 20 20 N 1.36041 * 124.95031 * 134.99944 * 12 9 8 21 21 C 1.46496 * 126.34833 * 359.93561 * 20 12 9 22 22 C 1.50693 * 109.47645 * 270.02431 * 21 20 12 23 23 H 1.08001 * 119.99900 * 359.97438 * 22 21 20 24 24 C 1.37879 * 120.00503 * 180.02562 * 22 21 20 25 25 N 1.31524 * 119.99690 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00397 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46908 * 90.00046 * 26 24 22 28 28 H 1.48497 * 109.47082 * 209.99764 * 26 24 22 29 29 H 1.48496 * 109.47074 * 330.00130 * 26 24 22 30 30 C 1.39574 * 119.71568 * 0.25231 * 5 4 3 31 31 C 1.37958 * 119.84939 * 359.51438 * 30 5 4 32 32 H 1.08995 * 109.47303 * 89.99850 * 1 2 3 33 33 H 1.09007 * 109.47077 * 210.00439 * 1 2 3 34 34 H 1.09003 * 109.47099 * 329.99350 * 1 2 3 35 35 H 1.08001 * 119.92408 * 359.97438 * 3 2 1 36 36 H 1.07994 * 120.07500 * 179.97438 * 4 3 2 37 37 H 0.97001 * 120.00106 * 359.97438 * 8 6 5 38 38 H 1.08997 * 109.47325 * 59.99297 * 11 9 8 39 39 H 1.08990 * 109.47503 * 180.02562 * 11 9 8 40 40 H 1.09000 * 109.46860 * 300.00052 * 11 9 8 41 41 H 1.08002 * 120.06112 * 0.77402 * 15 14 13 42 42 H 1.08002 * 119.67092 * 180.27749 * 16 15 14 43 43 H 1.07995 * 119.77284 * 180.02562 * 17 16 15 44 44 H 1.08002 * 120.15797 * 179.97438 * 18 17 16 45 45 H 1.09007 * 109.47035 * 30.02292 * 21 20 12 46 46 H 1.08999 * 109.47184 * 150.01872 * 21 20 12 47 47 H 0.96996 * 119.99756 * 179.97438 * 25 24 22 48 48 H 1.07993 * 120.07454 * 179.72677 * 30 5 4 49 49 H 1.08006 * 119.92744 * 180.23266 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2070 -0.0005 5 6 4.2762 -0.0001 -0.0005 6 6 5.7547 -0.0001 -0.0017 7 8 6.3624 1.0525 -0.0031 8 7 6.4285 -1.1673 -0.0022 9 6 7.8935 -1.1673 -0.0028 10 1 8.2566 -0.3255 -0.5923 11 6 8.4042 -1.0418 1.4340 12 6 8.3955 -2.4550 -0.6036 13 7 7.9334 -3.6384 -0.3230 14 6 8.6046 -4.5733 -1.0437 15 6 8.5269 -5.9661 -1.1248 16 6 9.3669 -6.6472 -1.9594 17 6 10.3042 -5.9703 -2.7271 18 6 10.4030 -4.5971 -2.6585 19 6 9.5579 -3.8880 -1.8157 20 7 9.3983 -2.5494 -1.5181 21 6 10.1657 -1.4368 -2.0831 22 6 9.4809 -0.9352 -3.3282 23 1 8.5657 -1.3991 -3.6652 24 6 10.0232 0.1153 -4.0377 25 7 11.1380 0.6799 -3.6276 26 14 9.1746 0.7366 -5.5815 27 1 8.2085 1.8047 -5.2195 28 1 10.1891 1.2834 -6.5180 29 1 8.4516 -0.3843 -6.2341 30 6 3.5753 -1.2071 -0.0053 31 6 2.1957 -1.2000 0.0001 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8899 0.5139 35 1 1.6522 2.1332 -0.0004 36 1 4.1118 2.1443 -0.0010 37 1 5.9435 -2.0074 -0.0014 38 1 8.0411 -1.8836 2.0235 39 1 9.4941 -1.0414 1.4335 40 1 8.0411 -0.1105 1.8686 41 1 7.8009 -6.5029 -0.5322 42 1 9.3008 -7.7234 -2.0228 43 1 10.9608 -6.5233 -3.3824 44 1 11.1345 -4.0752 -3.2577 45 1 10.2278 -0.6302 -1.3525 46 1 11.1701 -1.7783 -2.3334 47 1 11.5197 1.4186 -4.1270 48 1 4.1117 -2.1444 -0.0098 49 1 1.6521 -2.1333 0.0002 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012532097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = 49.467257 kcal Electronic energy + Delta-G solvation = -31849.145964 eV Core-core repulsion = 27741.070973 eV Total energy + Delta-G solvation = -4108.074991 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.65800 -40.15361 -38.55745 -37.05833 -35.09676 -34.17211 -33.14733 -32.38266 -31.33316 -30.55041 -29.90192 -28.35670 -27.43338 -27.26198 -24.32108 -23.44778 -22.78169 -22.57229 -21.66168 -21.04732 -20.10232 -19.40769 -18.01721 -16.94751 -16.80265 -16.18978 -16.04947 -15.54123 -15.23825 -14.95788 -14.87659 -14.59763 -14.54380 -14.37761 -13.94622 -13.71102 -13.62947 -13.43180 -13.35338 -13.12516 -12.71361 -12.54541 -12.48998 -12.03241 -11.98071 -11.90347 -11.74569 -11.57734 -11.48431 -11.17066 -11.08486 -11.02407 -10.92179 -10.82654 -10.34613 -10.22372 -9.79608 -9.48110 -9.38855 -9.12544 -9.02474 -8.77189 -8.72395 -7.77961 -7.54617 -6.35396 -4.44796 0.76946 1.24935 1.39832 2.03958 2.88608 2.99182 3.18070 3.24645 3.28033 3.39230 3.64942 3.82701 4.23033 4.34386 4.40107 4.58187 4.61130 4.78308 4.91605 4.98619 5.00680 5.08368 5.22466 5.31479 5.34874 5.42302 5.43982 5.47965 5.53741 5.55509 5.76572 5.80094 5.86695 5.87199 5.91205 5.98854 6.06051 6.14957 6.18606 6.29505 6.35784 6.36500 6.39408 6.58208 6.74037 6.76502 6.82533 6.91173 7.03794 7.25382 7.36989 7.55309 7.67726 7.74310 7.84542 8.35160 8.42782 8.61060 9.24033 10.72138 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.007374 B = 0.003355 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3796.271329 B = 8342.884378 C =10429.993903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.131 4.131 4 C -0.055 4.055 5 C -0.133 4.133 6 C 0.559 3.441 7 O -0.531 6.531 8 N -0.708 5.708 9 C 0.227 3.773 10 H 0.120 0.880 11 C -0.153 4.153 12 C 0.271 3.729 13 N -0.509 5.509 14 C 0.039 3.961 15 C -0.074 4.074 16 C -0.136 4.136 17 C -0.121 4.121 18 C -0.091 4.091 19 C 0.057 3.943 20 N -0.446 5.446 21 C 0.235 3.765 22 C -0.545 4.545 23 H 0.063 0.937 24 C 0.071 3.929 25 N -0.886 5.886 26 Si 0.903 3.097 27 H -0.275 1.275 28 H -0.282 1.282 29 H -0.272 1.272 30 C -0.080 4.080 31 C -0.129 4.129 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.406 0.594 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.270 0.730 48 H 0.129 0.871 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.881 -6.185 7.903 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.149 4.149 4 C -0.074 4.074 5 C -0.136 4.136 6 C 0.346 3.654 7 O -0.408 6.408 8 N -0.361 5.361 9 C 0.120 3.880 10 H 0.138 0.862 11 C -0.212 4.212 12 C 0.005 3.995 13 N -0.231 5.231 14 C -0.081 4.081 15 C -0.093 4.093 16 C -0.157 4.157 17 C -0.141 4.141 18 C -0.112 4.112 19 C -0.056 4.056 20 N -0.130 5.130 21 C 0.116 3.884 22 C -0.583 4.583 23 H 0.082 0.918 24 C -0.133 4.133 25 N -0.523 5.523 26 Si 0.730 3.270 27 H -0.200 1.200 28 H -0.207 1.207 29 H -0.196 1.196 30 C -0.099 4.099 31 C -0.147 4.147 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.243 0.757 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.146 0.854 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.813 -5.296 8.350 16.988 hybrid contribution 0.208 0.152 -1.621 1.641 sum -13.605 -5.144 6.730 16.026 Atomic orbital electron populations 1.20850 0.90998 1.02960 1.02590 1.20138 0.96265 0.93226 0.97027 1.21019 0.93833 0.97780 1.02296 1.21295 0.93807 0.97871 0.94453 1.19953 0.92783 0.94502 1.06371 1.18238 0.87065 0.83749 0.76376 1.90796 1.69641 1.30975 1.49392 1.45787 1.06342 1.08978 1.74957 1.19189 0.79736 0.92035 0.97002 0.86231 1.22112 1.01712 1.02842 0.94563 1.23104 0.89796 0.94973 0.91634 1.70170 1.28704 0.97302 1.26942 1.19034 0.96637 0.94000 0.98443 1.19816 0.99771 0.90177 0.99571 1.20479 0.97418 0.99303 0.98504 1.20748 0.99709 0.93028 1.00606 1.20089 0.99176 0.93527 0.98377 1.18937 1.00833 0.84387 1.01429 1.45945 1.28676 1.06588 1.31766 1.19819 0.91589 0.82014 0.94960 1.21220 1.10427 1.17554 1.09100 0.91839 1.24901 0.94737 0.95622 0.98052 1.69906 1.18901 1.23681 1.39796 0.86388 0.79343 0.79321 0.81959 1.20038 1.20713 1.19647 1.21374 0.94550 0.97255 0.96674 1.20972 0.93825 0.97795 1.02151 0.90845 0.91326 0.91342 0.85451 0.84498 0.75720 0.91583 0.91288 0.91064 0.86253 0.86225 0.86006 0.85839 0.92998 0.93195 0.92079 0.85356 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.00 36.00 0.36 -0.41 16 2 C -0.07 -0.63 5.89 -104.53 -0.62 -1.25 16 3 C -0.13 -1.36 9.68 -39.64 -0.38 -1.75 16 4 C -0.06 -0.72 9.60 -39.18 -0.38 -1.09 16 5 C -0.13 -1.88 5.87 -104.96 -0.62 -2.49 16 6 C 0.56 9.54 7.74 -12.33 -0.10 9.45 16 7 O -0.53 -10.83 16.01 5.33 0.09 -10.74 16 8 N -0.71 -11.64 5.02 -55.88 -0.28 -11.92 16 9 C 0.23 4.17 2.83 -69.08 -0.20 3.97 16 10 H 0.12 2.57 6.45 -51.93 -0.33 2.23 16 11 C -0.15 -2.40 9.47 37.16 0.35 -2.05 16 12 C 0.27 5.44 6.68 -154.82 -1.03 4.41 16 13 N -0.51 -9.89 10.90 -8.23 -0.09 -9.98 16 14 C 0.04 0.77 7.23 -84.70 -0.61 0.15 16 15 C -0.07 -1.18 10.05 -39.61 -0.40 -1.58 16 16 C -0.14 -1.94 9.96 -39.97 -0.40 -2.34 16 17 C -0.12 -1.82 10.03 -39.52 -0.40 -2.22 16 18 C -0.09 -1.68 10.05 -39.50 -0.40 -2.08 16 19 C 0.06 1.18 6.87 -83.99 -0.58 0.60 16 20 N -0.45 -9.79 2.79 -112.44 -0.31 -10.10 16 21 C 0.23 5.70 5.45 -5.20 -0.03 5.67 16 22 C -0.54 -14.58 9.39 -34.44 -0.32 -14.90 16 23 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 24 C 0.07 1.92 5.46 -17.81 -0.10 1.83 16 25 N -0.89 -24.51 13.29 55.43 0.74 -23.78 16 26 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 27 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 29 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 30 C -0.08 -0.94 9.54 -39.19 -0.37 -1.31 16 31 C -0.13 -1.29 9.68 -39.64 -0.38 -1.68 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.14 1.79 7.65 -52.49 -0.40 1.39 16 37 H 0.41 6.01 6.33 -40.82 -0.26 5.75 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 45 H 0.05 1.29 7.29 -51.93 -0.38 0.91 16 46 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 48 H 0.13 1.35 6.41 -52.49 -0.34 1.01 16 49 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 415.79 15.07 6.27 6.27 Total: -1.00 -31.14 415.79 -11.95 -43.09 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.74 Total: 10.04 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -6.59 Total: -9.06 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.05 Total: -55.77 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.14 -11.95 -43.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012532097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.562 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds