Wall clock time and date at job start Tue Mar 31 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38360 * 119.85722 * 2 1 4 4 C 1.37957 * 120.14867 * 180.02562 * 3 2 1 5 5 C 1.39580 * 119.84844 * 359.97438 * 4 3 2 6 6 C 1.47852 * 120.13788 * 179.97438 * 5 4 3 7 7 O 1.21541 * 120.00266 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99541 * 180.02562 * 6 5 4 9 9 C 1.46495 * 119.99771 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47259 * 324.98846 * 9 8 6 11 11 C 1.52998 * 109.47793 * 84.99589 * 9 8 6 12 12 C 1.50703 * 109.46882 * 204.99447 * 9 8 6 13 13 N 1.30105 * 124.95136 * 314.97326 * 12 9 8 14 14 C 1.35790 * 109.64670 * 179.73712 * 13 12 9 15 15 C 1.39735 * 133.59667 * 179.47614 * 14 13 12 16 16 C 1.36603 * 119.88474 * 180.48799 * 15 14 13 17 17 C 1.38782 * 120.66847 * 0.26358 * 16 15 14 18 18 C 1.37848 * 120.45006 * 0.04028 * 17 16 15 19 19 C 1.38834 * 119.69217 * 359.97438 * 18 17 16 20 20 N 1.36041 * 124.95031 * 134.99944 * 12 9 8 21 21 C 1.46496 * 126.34833 * 359.93561 * 20 12 9 22 22 C 1.50693 * 109.47645 * 270.02431 * 21 20 12 23 23 H 1.08001 * 119.99900 * 359.97438 * 22 21 20 24 24 C 1.37879 * 120.00503 * 180.02562 * 22 21 20 25 25 N 1.31524 * 119.99690 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00397 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46908 * 90.00046 * 26 24 22 28 28 H 1.48497 * 109.47082 * 209.99764 * 26 24 22 29 29 H 1.48496 * 109.47074 * 330.00130 * 26 24 22 30 30 C 1.39574 * 119.71568 * 0.25231 * 5 4 3 31 31 C 1.37958 * 119.84939 * 359.51438 * 30 5 4 32 32 H 1.08995 * 109.47303 * 89.99850 * 1 2 3 33 33 H 1.09007 * 109.47077 * 210.00439 * 1 2 3 34 34 H 1.09003 * 109.47099 * 329.99350 * 1 2 3 35 35 H 1.08001 * 119.92408 * 359.97438 * 3 2 1 36 36 H 1.07994 * 120.07500 * 179.97438 * 4 3 2 37 37 H 0.97001 * 120.00106 * 359.97438 * 8 6 5 38 38 H 1.08997 * 109.47325 * 59.99297 * 11 9 8 39 39 H 1.08990 * 109.47503 * 180.02562 * 11 9 8 40 40 H 1.09000 * 109.46860 * 300.00052 * 11 9 8 41 41 H 1.08002 * 120.06112 * 0.77402 * 15 14 13 42 42 H 1.08002 * 119.67092 * 180.27749 * 16 15 14 43 43 H 1.07995 * 119.77284 * 180.02562 * 17 16 15 44 44 H 1.08002 * 120.15797 * 179.97438 * 18 17 16 45 45 H 1.09007 * 109.47035 * 30.02292 * 21 20 12 46 46 H 1.08999 * 109.47184 * 150.01872 * 21 20 12 47 47 H 0.96996 * 119.99756 * 179.97438 * 25 24 22 48 48 H 1.07993 * 120.07454 * 179.72677 * 30 5 4 49 49 H 1.08006 * 119.92744 * 180.23266 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2070 -0.0005 5 6 4.2762 -0.0001 -0.0005 6 6 5.7547 -0.0001 -0.0017 7 8 6.3624 1.0525 -0.0031 8 7 6.4285 -1.1673 -0.0022 9 6 7.8935 -1.1673 -0.0028 10 1 8.2566 -0.3255 -0.5923 11 6 8.4042 -1.0418 1.4340 12 6 8.3955 -2.4550 -0.6036 13 7 7.9334 -3.6384 -0.3230 14 6 8.6046 -4.5733 -1.0437 15 6 8.5269 -5.9661 -1.1248 16 6 9.3669 -6.6472 -1.9594 17 6 10.3042 -5.9703 -2.7271 18 6 10.4030 -4.5971 -2.6585 19 6 9.5579 -3.8880 -1.8157 20 7 9.3983 -2.5494 -1.5181 21 6 10.1657 -1.4368 -2.0831 22 6 9.4809 -0.9352 -3.3282 23 1 8.5657 -1.3991 -3.6652 24 6 10.0232 0.1153 -4.0377 25 7 11.1380 0.6799 -3.6276 26 14 9.1746 0.7366 -5.5815 27 1 8.2085 1.8047 -5.2195 28 1 10.1891 1.2834 -6.5180 29 1 8.4516 -0.3843 -6.2341 30 6 3.5753 -1.2071 -0.0053 31 6 2.1957 -1.2000 0.0001 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8899 0.5139 35 1 1.6522 2.1332 -0.0004 36 1 4.1118 2.1443 -0.0010 37 1 5.9435 -2.0074 -0.0014 38 1 8.0411 -1.8836 2.0235 39 1 9.4941 -1.0414 1.4335 40 1 8.0411 -0.1105 1.8686 41 1 7.8009 -6.5029 -0.5322 42 1 9.3008 -7.7234 -2.0228 43 1 10.9608 -6.5233 -3.3824 44 1 11.1345 -4.0752 -3.2577 45 1 10.2278 -0.6302 -1.3525 46 1 11.1701 -1.7783 -2.3334 47 1 11.5197 1.4186 -4.1270 48 1 4.1117 -2.1444 -0.0098 49 1 1.6521 -2.1333 0.0002 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012532097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:36 Heat of formation + Delta-G solvation = 33.514307 kcal Electronic energy + Delta-G solvation = -31849.837736 eV Core-core repulsion = 27741.070973 eV Total energy + Delta-G solvation = -4108.766763 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.15757 -41.33217 -39.62227 -38.41036 -36.56029 -35.97548 -34.23683 -34.05913 -32.36372 -31.67178 -31.32566 -29.72520 -29.14020 -28.25403 -25.65422 -25.37837 -23.70600 -23.61803 -23.05269 -22.35997 -21.31963 -20.90600 -19.26445 -18.94368 -18.23899 -17.79660 -17.35163 -16.61390 -16.56284 -16.37839 -16.20015 -16.02601 -15.78572 -15.61827 -15.06555 -14.89337 -14.71146 -14.64354 -14.56833 -14.43350 -14.32866 -14.01420 -13.80647 -13.30021 -13.25937 -13.00361 -12.91776 -12.86381 -12.76487 -12.59850 -12.57207 -12.48968 -12.39641 -12.14335 -12.01751 -11.96013 -11.17191 -11.11747 -11.02175 -10.80638 -10.41979 -9.99343 -9.68584 -9.22063 -8.99218 -8.43040 -6.61112 -0.20184 0.02054 0.38469 0.69059 1.27680 1.30058 1.38961 1.52333 1.77409 1.85986 2.16206 2.29723 2.82143 2.87544 2.94327 2.99053 3.50933 3.59667 3.81396 3.96880 3.98914 4.01303 4.04511 4.15271 4.21830 4.30370 4.36321 4.41245 4.47610 4.56752 4.59638 4.70163 4.74492 4.76506 4.80010 4.86480 4.87949 4.95696 5.04047 5.05796 5.19506 5.23029 5.31965 5.35102 5.37336 5.42399 5.57371 5.63130 5.64498 5.68664 5.73918 5.93409 6.04527 6.15070 6.38482 6.50053 6.86701 7.05718 7.11004 8.63029 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.007374 B = 0.003355 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3796.271329 B = 8342.884378 C =10429.993903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.132 4.132 4 C -0.072 4.072 5 C -0.161 4.161 6 C 0.555 3.445 7 O -0.577 6.577 8 N -0.700 5.700 9 C 0.230 3.770 10 H 0.079 0.921 11 C -0.141 4.141 12 C 0.259 3.741 13 N -0.500 5.500 14 C 0.016 3.984 15 C -0.074 4.074 16 C -0.121 4.121 17 C -0.099 4.099 18 C -0.125 4.125 19 C 0.023 3.977 20 N -0.464 5.464 21 C 0.255 3.745 22 C -0.556 4.556 23 H 0.046 0.954 24 C 0.028 3.972 25 N -0.912 5.912 26 Si 0.962 3.038 27 H -0.276 1.276 28 H -0.266 1.266 29 H -0.270 1.270 30 C -0.082 4.082 31 C -0.129 4.129 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.152 0.848 36 H 0.123 0.877 37 H 0.415 0.585 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.148 0.852 42 H 0.169 0.831 43 H 0.159 0.841 44 H 0.110 0.890 45 H 0.035 0.965 46 H 0.033 0.967 47 H 0.274 0.726 48 H 0.137 0.863 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.684 -9.246 7.605 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.149 4.149 4 C -0.091 4.091 5 C -0.164 4.164 6 C 0.345 3.655 7 O -0.457 6.457 8 N -0.353 5.353 9 C 0.123 3.877 10 H 0.097 0.903 11 C -0.200 4.200 12 C -0.007 4.007 13 N -0.222 5.222 14 C -0.104 4.104 15 C -0.094 4.094 16 C -0.141 4.141 17 C -0.118 4.118 18 C -0.146 4.146 19 C -0.088 4.088 20 N -0.150 5.150 21 C 0.135 3.865 22 C -0.594 4.594 23 H 0.064 0.936 24 C -0.174 4.174 25 N -0.549 5.549 26 Si 0.786 3.214 27 H -0.202 1.202 28 H -0.191 1.191 29 H -0.194 1.194 30 C -0.101 4.101 31 C -0.146 4.146 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.170 0.830 36 H 0.141 0.859 37 H 0.253 0.747 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.165 0.835 42 H 0.186 0.814 43 H 0.177 0.823 44 H 0.128 0.872 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.083 0.917 48 H 0.154 0.846 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.632 -8.416 8.065 20.310 hybrid contribution 1.024 0.932 -1.534 2.066 sum -15.609 -7.484 6.531 18.501 Atomic orbital electron populations 1.20939 0.88274 1.04432 1.03617 1.20593 0.98179 0.92544 0.94522 1.21303 0.92647 0.99539 1.01450 1.21348 0.95176 0.97006 0.95581 1.19815 0.90676 0.96176 1.09694 1.18836 0.88541 0.83022 0.75149 1.90756 1.70864 1.32388 1.51714 1.45710 1.05488 1.09418 1.74645 1.19015 0.80911 0.90076 0.97694 0.90305 1.22018 1.01523 1.03508 0.92973 1.23317 0.89875 0.95697 0.91847 1.70150 1.28303 0.97010 1.26741 1.19561 0.96666 0.95476 0.98689 1.20278 1.00534 0.88609 0.99939 1.21033 0.95317 1.01542 0.96227 1.21252 0.99339 0.91516 0.99738 1.20286 0.99763 0.95258 0.99306 1.19456 1.02424 0.83915 1.02957 1.45780 1.29537 1.06717 1.32972 1.19274 0.90960 0.82446 0.93775 1.21327 1.09956 1.17920 1.10164 0.93580 1.25662 0.95313 0.95642 1.00795 1.69982 1.19876 1.24096 1.40966 0.85493 0.78576 0.78589 0.78781 1.20208 1.19065 1.19425 1.21511 0.95618 0.96500 0.96425 1.21348 0.92999 0.99388 1.00910 0.89808 0.89765 0.90093 0.83018 0.85934 0.74702 0.90048 0.91462 0.90886 0.83464 0.81380 0.82315 0.87173 0.94718 0.94862 0.91655 0.84575 0.82482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.00 71.23 0.71 -0.36 16 2 C -0.06 -0.96 5.89 -19.81 -0.12 -1.07 16 3 C -0.13 -2.57 9.68 22.23 0.22 -2.35 16 4 C -0.07 -1.93 9.60 22.53 0.22 -1.72 16 5 C -0.16 -4.72 5.87 -20.09 -0.12 -4.84 16 6 C 0.55 20.44 7.74 86.79 0.67 21.11 16 7 O -0.58 -25.74 16.01 -3.85 -0.06 -25.80 16 8 N -0.70 -24.54 5.02 -448.99 -2.25 -26.79 16 9 C 0.23 9.15 2.83 44.25 0.13 9.28 16 10 H 0.08 3.78 6.45 -2.39 -0.02 3.77 16 11 C -0.14 -4.72 9.47 71.98 0.68 -4.03 16 12 C 0.26 10.96 6.68 137.92 0.92 11.88 16 13 N -0.50 -19.70 10.90 -179.96 -1.96 -21.66 16 14 C 0.02 0.61 7.23 39.45 0.29 0.90 16 15 C -0.07 -2.15 10.05 22.25 0.22 -1.93 16 16 C -0.12 -2.90 9.96 22.02 0.22 -2.68 16 17 C -0.10 -2.69 10.03 22.31 0.22 -2.47 16 18 C -0.13 -4.66 10.05 22.32 0.22 -4.44 16 19 C 0.02 1.00 6.87 38.86 0.27 1.26 16 20 N -0.46 -21.75 2.79 -509.64 -1.42 -23.18 16 21 C 0.26 13.43 5.45 85.63 0.47 13.90 16 22 C -0.56 -31.56 9.39 25.60 0.24 -31.32 16 23 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 24 C 0.03 1.56 5.46 84.65 0.46 2.02 16 25 N -0.91 -52.49 13.29 21.45 0.28 -52.21 16 26 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 27 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 29 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 30 C -0.08 -1.87 9.54 22.53 0.21 -1.66 16 31 C -0.13 -2.25 9.68 22.23 0.22 -2.04 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.56 8.08 -2.38 -0.02 0.54 16 34 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 35 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.12 3.52 7.65 -2.91 -0.02 3.50 16 37 H 0.41 12.76 6.33 -92.71 -0.59 12.18 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 42 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 43 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 44 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 45 H 0.03 1.91 7.29 -2.38 -0.02 1.89 16 46 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 48 H 0.14 2.78 6.41 -2.91 -0.02 2.76 16 49 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -73.10 415.79 3.35 -69.75 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.39 Total: 33.77 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 6.35 Total: -0.57 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -5.35 Total: -123.84 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.06 Total: -25.80 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -73.10 3.35 -69.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012532097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.260 kcal (2) G-P(sol) polarization free energy of solvation -73.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds