Wall clock time and date at job start Tue Mar 31 2020 05:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47218 * 2 1 4 4 N 1.32328 * 120.42874 * 270.24016 * 3 2 1 5 5 C 1.32571 * 121.05182 * 180.29031 * 4 3 2 6 6 S 1.76205 * 119.03881 * 179.73011 * 5 4 3 7 7 C 1.81001 * 100.00151 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47096 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47267 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99862 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00073 * 179.97438 * 9 8 7 12 12 N 1.31524 * 119.99956 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00096 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47347 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46687 * 120.00238 * 13 11 9 16 16 H 1.48494 * 109.47563 * 239.99910 * 13 11 9 17 17 N 1.32566 * 121.92922 * 359.74696 * 5 4 3 18 18 C 1.32757 * 120.73039 * 359.97438 * 17 5 4 19 19 N 1.38351 * 120.55630 * 179.97438 * 18 17 5 20 20 C 1.39301 * 120.43089 * 90.00534 * 3 2 1 21 21 C 1.48269 * 120.87043 * 359.96926 * 20 3 2 22 22 C 1.39398 * 120.11985 * 244.72842 * 21 20 3 23 23 C 1.37985 * 119.88820 * 179.97438 * 22 21 20 24 24 C 1.38440 * 120.11323 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 119.88477 * 180.02562 * 24 23 22 26 26 C 1.38440 * 120.22994 * 359.97438 * 24 23 22 27 27 C 1.37984 * 120.11758 * 0.03129 * 26 24 23 28 28 H 1.08997 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46710 * 299.99942 * 1 2 3 30 30 H 1.08994 * 109.47363 * 59.99713 * 1 2 3 31 31 H 1.09003 * 109.46710 * 240.00058 * 2 1 3 32 32 H 1.09003 * 109.47110 * 120.00255 * 2 1 3 33 33 H 1.09004 * 109.47032 * 299.99508 * 7 6 5 34 34 H 1.08995 * 109.47009 * 59.99872 * 7 6 5 35 35 H 1.09004 * 109.46628 * 300.00176 * 8 7 6 36 36 H 1.09002 * 109.47140 * 59.99693 * 8 7 6 37 37 H 0.97002 * 119.99934 * 179.97438 * 12 11 9 38 38 H 0.97005 * 120.00517 * 180.02562 * 19 18 17 39 39 H 0.97005 * 119.99853 * 0.02783 * 19 18 17 40 40 H 1.08001 * 120.05319 * 0.27642 * 22 21 20 41 41 H 1.07997 * 119.94147 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.94268 * 180.02562 * 26 24 23 43 43 H 1.08002 * 120.06176 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2512 2.0543 -1.1410 5 6 2.6985 3.3022 -1.1555 6 16 2.9784 4.0925 -2.7052 7 6 3.5597 5.7085 -2.1335 8 6 3.8739 6.5939 -3.3411 9 6 4.3573 7.9396 -2.8651 10 1 4.4333 8.1428 -1.8071 11 6 4.7036 8.9109 -3.7803 12 7 4.6115 8.6632 -5.0687 13 14 5.3021 10.5791 -3.1903 14 1 5.3143 10.6040 -1.7056 15 1 6.6758 10.8209 -3.7003 16 1 4.3928 11.6386 -3.6961 17 7 2.9416 3.9728 -0.0381 18 6 2.7424 3.4102 1.1478 19 7 2.9978 4.1132 2.3116 20 6 2.2676 2.0860 1.2011 21 6 2.0298 1.4149 2.5017 22 6 1.0404 1.8879 3.3622 23 6 0.8227 1.2594 4.5712 24 6 1.5853 0.1611 4.9303 25 17 1.3059 -0.6255 6.4525 26 6 2.5691 -0.3126 4.0793 27 6 2.7949 0.3087 2.8681 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.7849 6.1804 -1.5293 34 1 4.4602 5.5791 -1.5333 35 1 4.6485 6.1221 -3.9457 36 1 2.9731 6.7232 -3.9410 37 1 4.8548 9.3468 -5.7126 38 1 2.8498 3.6942 3.1739 39 1 3.3250 5.0252 2.2654 40 1 0.4419 2.7418 3.0810 41 1 0.0561 1.6248 5.2384 42 1 3.1610 -1.1700 4.3640 43 1 3.5630 -0.0614 2.2051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012563812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:50 Heat of formation + Delta-G solvation = 39.906840 kcal Electronic energy + Delta-G solvation = -26372.477051 eV Core-core repulsion = 22568.474416 eV Total energy + Delta-G solvation = -3804.002635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 363.087 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13355 -39.38997 -36.91405 -36.06481 -34.77201 -33.73527 -31.80624 -31.66697 -31.40586 -30.80388 -28.98218 -25.44826 -25.17510 -24.36529 -23.12500 -22.02350 -21.67509 -21.08623 -18.47274 -17.91367 -17.69782 -16.55669 -16.30736 -15.92776 -15.75884 -15.64785 -14.97747 -14.56210 -14.53185 -14.46043 -13.98929 -13.88755 -13.80030 -13.65857 -13.56749 -12.84353 -12.58210 -12.17581 -12.07895 -11.94869 -11.80102 -11.72386 -11.65315 -11.30906 -11.22349 -11.06508 -10.76065 -10.56704 -10.35229 -9.99074 -9.94546 -9.68583 -9.51096 -9.39839 -9.13940 -8.88698 -8.48681 -8.44411 -7.31416 -6.08500 -4.12458 0.47270 0.82850 1.00196 1.42067 1.68671 1.71305 2.75942 3.12435 3.27170 3.34483 3.36463 3.38922 3.73763 4.13248 4.30019 4.37835 4.40426 4.42375 4.60839 4.86215 4.91338 4.96823 5.03310 5.12916 5.20256 5.27494 5.35303 5.42953 5.50495 5.66604 5.71789 5.77371 5.87108 5.98980 6.04311 6.06612 6.18125 6.25511 6.29129 6.70052 6.74097 7.05484 7.50430 7.52161 7.57315 7.87397 8.19744 8.24743 8.92205 9.51454 11.02456 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.001999 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.541524 B =14002.890485 C =15316.931391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 C 0.237 3.763 4 N -0.542 5.542 5 C 0.353 3.647 6 S -0.011 6.011 7 C -0.081 4.081 8 C 0.032 3.968 9 C -0.516 4.516 10 H 0.060 0.940 11 C 0.059 3.941 12 N -0.891 5.891 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.579 5.579 18 C 0.471 3.529 19 N -0.832 5.832 20 C -0.258 4.258 21 C -0.004 4.004 22 C -0.104 4.104 23 C -0.104 4.104 24 C -0.039 4.039 25 Cl -0.074 7.074 26 C -0.105 4.105 27 C -0.097 4.097 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.262 0.738 38 H 0.409 0.591 39 H 0.410 0.590 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 -20.255 20.991 30.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C 0.089 3.911 4 N -0.263 5.263 5 C -0.022 4.022 6 S 0.229 5.771 7 C -0.230 4.230 8 C -0.007 4.007 9 C -0.556 4.556 10 H 0.078 0.922 11 C -0.144 4.144 12 N -0.529 5.529 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 N -0.308 5.308 18 C 0.221 3.779 19 N -0.376 5.376 20 C -0.272 4.272 21 C -0.006 4.006 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.065 4.065 25 Cl -0.045 7.045 26 C -0.124 4.124 27 C -0.115 4.115 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.240 0.760 39 H 0.241 0.759 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.538 -20.156 18.818 28.587 hybrid contribution 0.439 1.202 2.867 3.140 sum -7.099 -18.954 21.686 29.664 Atomic orbital electron populations 1.21644 0.93589 1.02194 1.02505 1.20601 0.97023 0.90083 1.03935 1.21460 0.87567 0.95538 0.86531 1.68429 1.20148 1.08951 1.28751 1.25119 0.90265 0.89724 0.97053 1.86117 1.78118 1.13783 0.99066 1.23961 1.03549 0.91111 1.04366 1.19007 0.97869 0.93048 0.90751 1.21078 1.44488 0.96912 0.93138 0.92213 1.25019 0.95570 0.98899 0.94867 1.69979 1.48108 1.34299 1.00560 0.86451 0.78438 0.83702 0.78910 1.19694 1.20910 1.20906 1.68451 1.27680 1.37921 0.96766 1.18413 0.85632 0.86824 0.87010 1.42185 1.72870 1.18002 1.04550 1.19250 1.18309 0.95583 0.94083 1.18441 0.95052 0.94771 0.92317 1.21267 0.97446 1.00434 0.93141 1.20992 0.99510 0.94661 0.97137 1.20985 0.99695 0.96861 0.88987 1.98379 1.95770 1.80001 1.30329 1.21006 0.97231 1.00561 0.93553 1.21263 0.99196 0.95259 0.95802 0.91763 0.92663 0.91935 0.89348 0.89750 0.89950 0.89943 0.95439 0.95437 0.92810 0.76004 0.75945 0.85046 0.84779 0.84741 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.08 -0.76 5.89 -27.88 -0.16 -0.92 16 3 C 0.24 3.11 6.09 -81.98 -0.50 2.61 16 4 N -0.54 -8.86 10.31 -9.49 -0.10 -8.96 16 5 C 0.35 6.29 7.85 -90.82 -0.71 5.58 16 6 S -0.01 -0.20 22.24 -107.50 -2.39 -2.59 16 7 C -0.08 -1.72 4.74 37.16 0.18 -1.54 16 8 C 0.03 0.83 4.98 -27.88 -0.14 0.69 16 9 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 10 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 13 Si 0.90 21.23 29.54 -169.99 -5.02 16.20 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 N -0.58 -9.74 9.14 -12.45 -0.11 -9.86 16 18 C 0.47 6.35 7.81 -154.72 -1.21 5.14 16 19 N -0.83 -8.22 8.95 31.39 0.28 -7.93 16 20 C -0.26 -3.07 5.36 -104.42 -0.56 -3.63 16 21 C 0.00 -0.04 3.95 -104.91 -0.41 -0.45 16 22 C -0.10 -0.80 8.73 -39.24 -0.34 -1.14 16 23 C -0.10 -0.72 9.81 -39.60 -0.39 -1.11 16 24 C -0.04 -0.28 6.32 -39.43 -0.25 -0.53 16 25 Cl -0.07 -0.53 28.95 -51.86 -1.50 -2.03 16 26 C -0.10 -0.72 9.81 -39.60 -0.39 -1.11 16 27 C -0.10 -0.74 7.90 -39.24 -0.31 -1.05 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.67 5.50 -51.93 -0.29 0.39 16 33 H 0.08 1.74 8.11 -51.91 -0.42 1.32 16 34 H 0.08 1.74 8.11 -51.92 -0.42 1.32 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.41 3.10 7.01 -40.82 -0.29 2.81 16 39 H 0.41 3.88 8.95 -40.82 -0.37 3.51 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.13 0.95 7.88 -52.49 -0.41 0.53 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -30.98 392.08 -12.98 -43.96 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.54 Total: 2.15 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -5.24 Total: -11.35 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.81 Total: -52.25 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -2.39 Total: -2.59 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.98 -12.98 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012563812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.865 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds