Wall clock time and date at job start Tue Mar 31 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47218 * 2 1 4 4 N 1.32328 * 120.42874 * 270.24016 * 3 2 1 5 5 C 1.32571 * 121.05182 * 180.29031 * 4 3 2 6 6 S 1.76205 * 119.03881 * 179.73011 * 5 4 3 7 7 C 1.81001 * 100.00151 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47096 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47267 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99862 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00073 * 179.97438 * 9 8 7 12 12 N 1.31524 * 119.99956 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00096 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47347 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46687 * 120.00238 * 13 11 9 16 16 H 1.48494 * 109.47563 * 239.99910 * 13 11 9 17 17 N 1.32566 * 121.92922 * 359.74696 * 5 4 3 18 18 C 1.32757 * 120.73039 * 359.97438 * 17 5 4 19 19 N 1.38351 * 120.55630 * 179.97438 * 18 17 5 20 20 C 1.39301 * 120.43089 * 90.00534 * 3 2 1 21 21 C 1.48269 * 120.87043 * 359.96926 * 20 3 2 22 22 C 1.39398 * 120.11985 * 244.72842 * 21 20 3 23 23 C 1.37985 * 119.88820 * 179.97438 * 22 21 20 24 24 C 1.38440 * 120.11323 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 119.88477 * 180.02562 * 24 23 22 26 26 C 1.38440 * 120.22994 * 359.97438 * 24 23 22 27 27 C 1.37984 * 120.11758 * 0.03129 * 26 24 23 28 28 H 1.08997 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46710 * 299.99942 * 1 2 3 30 30 H 1.08994 * 109.47363 * 59.99713 * 1 2 3 31 31 H 1.09003 * 109.46710 * 240.00058 * 2 1 3 32 32 H 1.09003 * 109.47110 * 120.00255 * 2 1 3 33 33 H 1.09004 * 109.47032 * 299.99508 * 7 6 5 34 34 H 1.08995 * 109.47009 * 59.99872 * 7 6 5 35 35 H 1.09004 * 109.46628 * 300.00176 * 8 7 6 36 36 H 1.09002 * 109.47140 * 59.99693 * 8 7 6 37 37 H 0.97002 * 119.99934 * 179.97438 * 12 11 9 38 38 H 0.97005 * 120.00517 * 180.02562 * 19 18 17 39 39 H 0.97005 * 119.99853 * 0.02783 * 19 18 17 40 40 H 1.08001 * 120.05319 * 0.27642 * 22 21 20 41 41 H 1.07997 * 119.94147 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.94268 * 180.02562 * 26 24 23 43 43 H 1.08002 * 120.06176 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2512 2.0543 -1.1410 5 6 2.6985 3.3022 -1.1555 6 16 2.9784 4.0925 -2.7052 7 6 3.5597 5.7085 -2.1335 8 6 3.8739 6.5939 -3.3411 9 6 4.3573 7.9396 -2.8651 10 1 4.4333 8.1428 -1.8071 11 6 4.7036 8.9109 -3.7803 12 7 4.6115 8.6632 -5.0687 13 14 5.3021 10.5791 -3.1903 14 1 5.3143 10.6040 -1.7056 15 1 6.6758 10.8209 -3.7003 16 1 4.3928 11.6386 -3.6961 17 7 2.9416 3.9728 -0.0381 18 6 2.7424 3.4102 1.1478 19 7 2.9978 4.1132 2.3116 20 6 2.2676 2.0860 1.2011 21 6 2.0298 1.4149 2.5017 22 6 1.0404 1.8879 3.3622 23 6 0.8227 1.2594 4.5712 24 6 1.5853 0.1611 4.9303 25 17 1.3059 -0.6255 6.4525 26 6 2.5691 -0.3126 4.0793 27 6 2.7949 0.3087 2.8681 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.7849 6.1804 -1.5293 34 1 4.4602 5.5791 -1.5333 35 1 4.6485 6.1221 -3.9457 36 1 2.9731 6.7232 -3.9410 37 1 4.8548 9.3468 -5.7126 38 1 2.8498 3.6942 3.1739 39 1 3.3250 5.0252 2.2654 40 1 0.4419 2.7418 3.0810 41 1 0.0561 1.6248 5.2384 42 1 3.1610 -1.1700 4.3640 43 1 3.5630 -0.0614 2.2051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012563812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:49 Heat of formation + Delta-G solvation = 24.457522 kcal Electronic energy + Delta-G solvation = -26373.146984 eV Core-core repulsion = 22568.474416 eV Total energy + Delta-G solvation = -3804.672568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 363.087 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.16104 -40.08397 -37.50180 -37.04217 -35.82377 -35.66381 -33.04760 -32.53745 -32.43048 -32.05274 -29.85986 -27.40211 -26.09405 -25.48285 -23.72696 -23.15441 -22.61863 -22.58900 -19.51244 -19.03942 -18.67827 -18.35954 -17.08806 -16.86269 -16.71890 -16.57924 -16.50883 -16.03292 -15.58680 -15.43319 -15.21348 -14.96167 -14.66950 -14.51539 -14.38030 -14.10118 -13.73117 -13.66023 -13.22266 -13.04238 -12.83466 -12.62961 -12.58272 -12.48745 -12.40190 -12.22023 -12.10476 -11.89586 -11.79066 -11.71818 -11.41743 -11.13472 -11.06241 -10.60288 -10.43779 -10.06218 -9.78976 -9.43810 -8.68339 -8.22704 -6.35081 -0.41855 0.14126 0.26758 0.28668 0.33540 1.15461 1.22756 1.41928 1.42339 1.55596 2.34158 2.41220 2.50945 2.64913 3.10915 3.14978 3.43121 3.62811 3.82271 3.91022 3.99861 4.15122 4.25685 4.28020 4.35473 4.38626 4.41352 4.50779 4.59904 4.63881 4.85788 4.95878 4.98156 5.04561 5.08245 5.21893 5.23703 5.34393 5.37988 5.44589 5.46914 5.66434 5.73720 5.77994 6.09868 6.11798 6.60249 6.77723 7.09143 7.33720 8.89268 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.001999 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.541524 B =14002.890485 C =15316.931391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 C 0.221 3.779 4 N -0.559 5.559 5 C 0.338 3.662 6 S -0.029 6.029 7 C -0.060 4.060 8 C 0.039 3.961 9 C -0.536 4.536 10 H 0.065 0.935 11 C 0.002 3.998 12 N -0.929 5.929 13 Si 0.971 3.029 14 H -0.261 1.261 15 H -0.278 1.278 16 H -0.277 1.277 17 N -0.602 5.602 18 C 0.456 3.544 19 N -0.814 5.814 20 C -0.234 4.234 21 C -0.018 4.018 22 C -0.100 4.100 23 C -0.101 4.101 24 C -0.040 4.040 25 Cl -0.071 7.071 26 C -0.101 4.101 27 C -0.094 4.094 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.004 0.996 36 H 0.004 0.996 37 H 0.266 0.734 38 H 0.422 0.578 39 H 0.414 0.586 40 H 0.133 0.867 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 -21.330 24.302 33.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 C 0.075 3.925 4 N -0.281 5.281 5 C -0.038 4.038 6 S 0.210 5.790 7 C -0.209 4.209 8 C 0.000 4.000 9 C -0.576 4.576 10 H 0.084 0.916 11 C -0.197 4.197 12 N -0.569 5.569 13 Si 0.795 3.205 14 H -0.184 1.184 15 H -0.203 1.203 16 H -0.203 1.203 17 N -0.331 5.331 18 C 0.206 3.794 19 N -0.359 5.359 20 C -0.248 4.248 21 C -0.020 4.020 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.067 4.067 25 Cl -0.043 7.043 26 C -0.120 4.120 27 C -0.112 4.112 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.075 0.925 38 H 0.255 0.745 39 H 0.245 0.755 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.853 -21.258 22.209 31.731 hybrid contribution 0.467 1.356 2.043 2.496 sum -7.387 -19.902 24.252 32.231 Atomic orbital electron populations 1.21623 0.92804 1.03441 1.01613 1.20711 0.97523 0.88000 1.04968 1.22064 0.87442 0.96909 0.86060 1.68361 1.20551 1.08476 1.30665 1.24619 0.92354 0.90488 0.96388 1.85954 1.79439 1.12628 1.01010 1.23456 1.03375 0.91979 1.02065 1.18792 0.95878 0.93510 0.91804 1.21479 1.44525 0.97987 0.93570 0.91629 1.25990 0.95579 1.03176 0.94909 1.70109 1.49070 1.35819 1.01898 0.85309 0.77882 0.78379 0.78925 1.18443 1.20326 1.20312 1.68325 1.28441 1.38755 0.97619 1.18700 0.85991 0.87870 0.86880 1.42131 1.71706 1.17948 1.04071 1.19481 1.15319 0.94726 0.95249 1.18301 0.96662 0.95741 0.91309 1.21239 0.97032 1.00443 0.93114 1.21130 0.99610 0.94295 0.96888 1.21139 0.99637 0.96839 0.89069 1.98389 1.95741 1.79936 1.30186 1.21163 0.97065 1.00788 0.92937 1.21291 0.99040 0.94668 0.96248 0.89439 0.92574 0.93774 0.89382 0.87576 0.90161 0.90162 0.97779 0.97778 0.92542 0.74467 0.75544 0.84870 0.83230 0.83057 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.89 71.98 0.71 -1.47 16 2 C -0.07 -1.31 5.89 29.85 0.18 -1.13 16 3 C 0.22 5.60 6.09 42.74 0.26 5.86 16 4 N -0.56 -18.47 10.31 -183.93 -1.90 -20.37 16 5 C 0.34 12.34 7.85 180.42 1.42 13.75 16 6 S -0.03 -1.15 22.24 -56.49 -1.26 -2.40 16 7 C -0.06 -2.64 4.74 71.98 0.34 -2.30 16 8 C 0.04 2.10 4.98 29.85 0.15 2.24 16 9 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 10 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 11 C 0.00 0.12 5.46 84.65 0.46 0.58 16 12 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 13 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 14 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 N -0.60 -20.40 9.14 -193.31 -1.77 -22.17 16 18 C 0.46 11.89 7.81 133.58 1.04 12.93 16 19 N -0.81 -14.83 8.95 -54.59 -0.49 -15.32 16 20 C -0.23 -5.23 5.36 -19.73 -0.11 -5.34 16 21 C -0.02 -0.28 3.95 -20.05 -0.08 -0.36 16 22 C -0.10 -1.25 8.73 22.49 0.20 -1.05 16 23 C -0.10 -1.07 9.81 22.26 0.22 -0.85 16 24 C -0.04 -0.45 6.32 22.37 0.14 -0.31 16 25 Cl -0.07 -0.82 28.95 -2.72 -0.08 -0.90 16 26 C -0.10 -1.05 9.81 22.26 0.22 -0.84 16 27 C -0.09 -1.16 7.90 22.49 0.18 -0.99 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.11 1.40 5.50 -2.39 -0.01 1.39 16 33 H 0.08 3.51 8.11 -2.39 -0.02 3.49 16 34 H 0.08 3.52 8.11 -2.40 -0.02 3.50 16 35 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 36 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.42 5.45 7.01 -92.70 -0.65 4.80 16 39 H 0.41 7.29 8.95 -92.70 -0.83 6.46 16 40 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 42 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 43 H 0.14 1.57 7.88 -2.91 -0.02 1.55 16 Total: -1.00 -68.59 392.08 1.97 -66.62 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -0.41 Total: 13.92 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 5.56 Total: -9.31 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -3.87 Total: -113.71 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -1.26 Total: -2.40 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -68.59 1.97 -66.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012563812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.079 kcal (2) G-P(sol) polarization free energy of solvation -68.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds