Wall clock time and date at job start Tue Mar 31 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48506 * 109.47089 * 274.98227 * 3 2 1 5 5 H 1.48500 * 109.47451 * 34.98176 * 3 2 1 6 6 H 1.48499 * 109.47082 * 154.98486 * 3 2 1 7 7 C 1.39903 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00178 * 147.61693 * 7 2 1 9 9 C 1.41159 * 119.99974 * 327.61308 * 7 2 1 10 10 C 1.40863 * 120.16148 * 157.94768 * 9 7 2 11 11 C 1.36377 * 119.83111 * 180.02562 * 10 9 7 12 12 C 1.39490 * 120.16309 * 0.02562 * 11 10 9 13 13 N 1.39239 * 119.82893 * 179.97438 * 12 11 10 14 14 C 1.34771 * 120.00429 * 37.75575 * 13 12 11 15 15 O 1.21283 * 120.00137 * 356.70298 * 14 13 12 16 16 C 1.50701 * 119.99943 * 176.70322 * 14 13 12 17 17 C 1.53001 * 109.46932 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.46932 * 179.97438 * 17 16 14 19 19 O 1.21252 * 120.00480 * 359.97438 * 18 17 16 20 20 C 1.47172 * 119.99925 * 179.97438 * 18 17 16 21 21 C 1.39868 * 120.21624 * 0.02562 * 20 18 17 22 22 C 1.37721 * 119.75969 * 179.97438 * 21 20 18 23 23 C 1.38721 * 120.44895 * 359.97438 * 22 21 20 24 24 C 1.38432 * 120.11950 * 0.02562 * 23 22 21 25 25 C 1.38164 * 120.02585 * 359.97438 * 24 23 22 26 26 C 1.51406 * 109.73116 * 179.97438 * 24 23 22 27 27 C 1.54325 * 105.17738 * 342.77710 * 26 24 23 28 28 C 1.51436 * 130.19123 * 179.97438 * 23 22 21 29 29 C 1.39479 * 120.33240 * 0.25406 * 12 11 10 30 30 C 1.36376 * 120.16863 * 359.48287 * 29 12 11 31 31 H 0.96999 * 119.99877 * 0.02562 * 1 2 3 32 32 H 1.08006 * 120.09021 * 0.02562 * 10 9 7 33 33 H 1.07996 * 119.92061 * 179.97438 * 11 10 9 34 34 H 0.97003 * 119.99647 * 217.76361 * 13 12 11 35 35 H 1.08996 * 109.47352 * 60.00353 * 16 14 13 36 36 H 1.09002 * 109.47275 * 299.99862 * 16 14 13 37 37 H 1.09005 * 109.47570 * 60.00027 * 17 16 14 38 38 H 1.09000 * 109.47272 * 299.99633 * 17 16 14 39 39 H 1.08007 * 120.12018 * 359.69017 * 21 20 18 40 40 H 1.07997 * 119.78006 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.95983 * 179.97438 * 25 24 23 42 42 H 1.09002 * 110.29914 * 101.70526 * 26 24 23 43 43 H 1.09003 * 110.30028 * 223.84808 * 26 24 23 44 44 H 1.08999 * 110.81548 * 268.19500 * 27 26 24 45 45 H 1.09000 * 110.98445 * 144.74107 * 27 26 24 46 46 H 1.09003 * 110.29490 * 316.19236 * 28 23 22 47 47 H 1.09000 * 110.29492 * 78.33108 * 28 23 22 48 48 H 1.07997 * 119.90931 * 179.74708 * 29 12 11 49 49 H 1.08000 * 120.08517 * 180.25279 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3849 2.1073 -1.3948 5 1 1.4968 2.6200 0.8027 6 1 3.5890 1.4121 0.5920 7 6 2.0083 -1.2116 0.0005 8 1 2.9624 -1.2845 -0.5003 9 6 1.4672 -2.3387 0.6558 10 6 1.8854 -3.6349 0.2963 11 6 1.3578 -4.7191 0.9334 12 6 0.4060 -4.5469 1.9385 13 7 -0.1284 -5.6588 2.5841 14 6 0.6567 -6.7180 2.8634 15 8 1.8136 -6.7279 2.4996 16 6 0.0971 -7.8900 3.6277 17 6 1.1875 -8.9477 3.8097 18 6 0.6280 -10.1195 4.5745 19 8 -0.5285 -10.1095 4.9386 20 6 1.4854 -11.2761 4.8796 21 6 2.8203 -11.2923 4.4623 22 6 3.6144 -12.3793 4.7533 23 6 3.0994 -13.4576 5.4578 24 6 1.7792 -13.4487 5.8741 25 6 0.9716 -12.3646 5.5889 26 6 1.4684 -14.7317 6.6155 27 6 2.6012 -15.7061 6.2293 28 6 3.7626 -14.7479 5.8919 29 6 -0.0172 -3.2668 2.2960 30 6 0.5053 -2.1729 1.6715 31 1 -0.4850 0.8400 -0.0004 32 1 2.6220 -3.7698 -0.4820 33 1 1.6771 -5.7135 0.6586 34 1 -1.0660 -5.6710 2.8328 35 1 -0.7376 -8.3198 3.0740 36 1 -0.2497 -7.5543 4.6051 37 1 2.0220 -8.5178 4.3637 38 1 1.5346 -9.2836 2.8325 39 1 3.2256 -10.4574 3.9098 40 1 4.6450 -12.3923 4.4309 41 1 -0.0584 -12.3590 5.9138 42 1 1.4702 -14.5568 7.6914 43 1 0.5039 -15.1280 6.2977 44 1 2.3224 -16.2983 5.3578 45 1 2.8627 -16.3523 7.0672 46 1 4.3652 -15.1550 5.0800 47 1 4.3803 -14.5775 6.7737 48 1 -0.7575 -3.1416 3.0723 49 1 0.1796 -1.1821 1.9521 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012759278.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:38 Heat of formation + Delta-G solvation = -43.350012 kcal Electronic energy + Delta-G solvation = -29606.501537 eV Core-core repulsion = 25462.108936 eV Total energy + Delta-G solvation = -4144.392601 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.162 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.77270 -39.78429 -39.10674 -37.25134 -35.91725 -34.48077 -33.12357 -32.82605 -31.87071 -30.03058 -29.55647 -28.97691 -27.86161 -26.35016 -24.61684 -22.94256 -22.35767 -21.49863 -21.27343 -20.65275 -19.56535 -19.30268 -17.52190 -17.28295 -16.54086 -16.38310 -16.10410 -15.97470 -15.80613 -15.38173 -15.20599 -14.76637 -14.56125 -14.00137 -13.93599 -13.57526 -13.42485 -13.39896 -13.34908 -12.96474 -12.65033 -12.58695 -12.37581 -12.09064 -12.06017 -11.97396 -11.85951 -11.67470 -11.46478 -11.34222 -11.18538 -11.16809 -11.14547 -10.94922 -10.53530 -10.15994 -9.92811 -9.73022 -9.42061 -9.22965 -9.05064 -8.93570 -8.68358 -7.54620 -7.14706 -6.88393 -4.27236 0.34312 1.00765 2.13141 2.58737 2.96846 3.05089 3.10230 3.12547 3.34963 3.41432 3.50622 3.88945 3.90608 4.05805 4.12479 4.50084 4.50808 4.56754 4.60019 4.67519 4.78635 4.93516 5.03058 5.05627 5.19496 5.20201 5.27063 5.32293 5.35220 5.44503 5.57336 5.61244 5.65768 5.68585 5.72933 5.77517 5.86969 5.97388 6.03252 6.18137 6.20000 6.42774 6.51799 6.78096 6.96258 7.00371 7.15081 7.29375 7.29897 7.56977 7.70324 7.89628 8.02188 8.25477 8.30847 8.55167 8.78414 8.84041 9.00761 10.02012 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.029708 B = 0.001366 C = 0.001322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.293294 B =20488.706702 C =21169.783103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.082 0.918 9 C 0.112 3.888 10 C -0.224 4.224 11 C -0.065 4.065 12 C -0.023 4.023 13 N -0.649 5.649 14 C 0.498 3.502 15 O -0.538 6.538 16 C -0.130 4.130 17 C -0.148 4.148 18 C 0.400 3.600 19 O -0.455 6.455 20 C -0.169 4.169 21 C -0.068 4.068 22 C -0.121 4.121 23 C -0.068 4.068 24 C -0.115 4.115 25 C -0.049 4.049 26 C -0.082 4.082 27 C -0.121 4.121 28 C -0.087 4.087 29 C -0.102 4.102 30 C -0.171 4.171 31 H 0.283 0.717 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.395 0.605 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.140 0.860 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -25.661 12.103 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.494 4.494 8 H 0.100 0.900 9 C 0.109 3.891 10 C -0.244 4.244 11 C -0.085 4.085 12 C -0.115 4.115 13 N -0.292 5.292 14 C 0.285 3.715 15 O -0.416 6.416 16 C -0.170 4.170 17 C -0.186 4.186 18 C 0.278 3.722 19 O -0.331 6.331 20 C -0.170 4.170 21 C -0.087 4.087 22 C -0.139 4.139 23 C -0.068 4.068 24 C -0.115 4.115 25 C -0.067 4.067 26 C -0.119 4.119 27 C -0.158 4.158 28 C -0.124 4.124 29 C -0.122 4.122 30 C -0.191 4.191 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.228 0.772 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.157 0.843 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.107 0.893 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.255 -25.528 12.029 28.310 hybrid contribution -0.150 0.928 0.075 0.943 sum 2.105 -24.600 12.104 27.497 Atomic orbital electron populations 1.69949 1.08088 1.29868 1.31310 1.25937 0.94351 1.01506 0.91532 0.86515 0.81539 0.80849 0.79210 1.19453 1.19885 1.18089 1.19509 1.05410 0.93805 1.30633 0.90012 1.17597 0.89723 0.91860 0.89873 1.20596 1.07114 0.92341 1.04394 1.20296 0.96424 0.97969 0.93825 1.17077 1.07299 0.84930 1.02177 1.42963 1.12122 1.16134 1.57954 1.20504 0.86420 0.84123 0.80497 1.90675 1.17513 1.80232 1.53189 1.21422 0.99280 0.94207 1.02121 1.21752 1.00050 0.94006 1.02772 1.22545 0.87029 0.86475 0.76175 1.90512 1.18665 1.80054 1.43865 1.20388 0.95588 0.96920 1.04066 1.21465 0.92385 0.98019 0.96782 1.20637 1.00385 0.93019 0.99826 1.20939 0.94752 0.95551 0.95602 1.20562 0.94487 0.96315 1.00126 1.20850 0.99858 0.91124 0.94893 1.21057 0.99585 0.91477 0.99775 1.22293 0.94503 0.97104 1.01936 1.21145 0.98016 0.91635 1.01619 1.20181 1.00690 0.91640 0.99711 1.20613 1.02538 0.96632 0.99278 0.90596 0.88766 0.87977 0.77155 0.88679 0.88621 0.87324 0.87351 0.84259 0.85426 0.85136 0.90062 0.90502 0.90812 0.90328 0.90285 0.89764 0.89280 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.44 11.78 55.55 0.65 -18.79 16 2 C 0.09 2.19 4.77 -17.34 -0.08 2.10 16 3 Si 0.90 18.20 29.66 -169.99 -5.04 13.16 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.47 -12.34 8.94 -37.85 -0.34 -12.68 16 8 H 0.08 2.10 8.02 -52.49 -0.42 1.68 16 9 C 0.11 3.01 5.57 -106.80 -0.60 2.42 16 10 C -0.22 -5.74 9.74 -39.26 -0.38 -6.12 16 11 C -0.07 -1.58 8.59 -39.79 -0.34 -1.92 16 12 C -0.02 -0.51 6.25 -83.57 -0.52 -1.04 16 13 N -0.65 -11.54 5.30 -9.74 -0.05 -11.59 16 14 C 0.50 8.41 7.64 -10.99 -0.08 8.33 16 15 O -0.54 -10.99 13.60 5.55 0.08 -10.91 16 16 C -0.13 -1.60 4.99 -27.88 -0.14 -1.74 16 17 C -0.15 -1.64 3.61 -27.88 -0.10 -1.74 16 18 C 0.40 4.48 7.12 -30.68 -0.22 4.27 16 19 O -0.46 -6.14 15.97 5.58 0.09 -6.05 16 20 C -0.17 -1.72 5.87 -105.11 -0.62 -2.34 16 21 C -0.07 -0.60 9.47 -39.16 -0.37 -0.97 16 22 C -0.12 -0.96 10.02 -39.59 -0.40 -1.36 16 23 C -0.07 -0.54 6.15 -104.01 -0.64 -1.18 16 24 C -0.11 -0.97 6.12 -104.23 -0.64 -1.61 16 25 C -0.05 -0.48 9.60 -39.06 -0.37 -0.86 16 26 C -0.08 -0.48 6.77 -26.84 -0.18 -0.66 16 27 C -0.12 -0.55 7.07 -25.36 -0.18 -0.73 16 28 C -0.09 -0.46 6.77 -26.84 -0.18 -0.64 16 29 C -0.10 -2.36 9.90 -39.79 -0.39 -2.75 16 30 C -0.17 -4.39 8.74 -39.26 -0.34 -4.73 16 31 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 32 H 0.09 2.29 8.06 -52.48 -0.42 1.87 16 33 H 0.10 2.41 6.45 -52.49 -0.34 2.07 16 34 H 0.40 5.65 8.82 -40.82 -0.36 5.29 16 35 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.11 1.17 8.05 -51.93 -0.42 0.75 16 38 H 0.11 1.15 8.04 -51.93 -0.42 0.73 16 39 H 0.14 1.04 7.07 -52.48 -0.37 0.67 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.13 1.26 7.64 -52.49 -0.40 0.86 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 49 H 0.11 2.78 6.52 -52.49 -0.34 2.44 16 LS Contribution 409.44 15.07 6.17 6.17 Total: -1.00 -31.65 409.44 -12.08 -43.73 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -6.85 Total: 10.22 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -7.12 Total: -25.94 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 0.60 Total: -30.38 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.16 Total: -16.96 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.04 Total: 13.16 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.65 -12.08 -43.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012759278.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.377 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds