Wall clock time and date at job start Tue Mar 31 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48506 * 109.47089 * 274.98227 * 3 2 1 5 5 H 1.48500 * 109.47451 * 34.98176 * 3 2 1 6 6 H 1.48499 * 109.47082 * 154.98486 * 3 2 1 7 7 C 1.39903 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00178 * 147.61693 * 7 2 1 9 9 C 1.41159 * 119.99974 * 327.61308 * 7 2 1 10 10 C 1.40863 * 120.16148 * 157.94768 * 9 7 2 11 11 C 1.36377 * 119.83111 * 180.02562 * 10 9 7 12 12 C 1.39490 * 120.16309 * 0.02562 * 11 10 9 13 13 N 1.39239 * 119.82893 * 179.97438 * 12 11 10 14 14 C 1.34771 * 120.00429 * 37.75575 * 13 12 11 15 15 O 1.21283 * 120.00137 * 356.70298 * 14 13 12 16 16 C 1.50701 * 119.99943 * 176.70322 * 14 13 12 17 17 C 1.53001 * 109.46932 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.46932 * 179.97438 * 17 16 14 19 19 O 1.21252 * 120.00480 * 359.97438 * 18 17 16 20 20 C 1.47172 * 119.99925 * 179.97438 * 18 17 16 21 21 C 1.39868 * 120.21624 * 0.02562 * 20 18 17 22 22 C 1.37721 * 119.75969 * 179.97438 * 21 20 18 23 23 C 1.38721 * 120.44895 * 359.97438 * 22 21 20 24 24 C 1.38432 * 120.11950 * 0.02562 * 23 22 21 25 25 C 1.38164 * 120.02585 * 359.97438 * 24 23 22 26 26 C 1.51406 * 109.73116 * 179.97438 * 24 23 22 27 27 C 1.54325 * 105.17738 * 342.77710 * 26 24 23 28 28 C 1.51436 * 130.19123 * 179.97438 * 23 22 21 29 29 C 1.39479 * 120.33240 * 0.25406 * 12 11 10 30 30 C 1.36376 * 120.16863 * 359.48287 * 29 12 11 31 31 H 0.96999 * 119.99877 * 0.02562 * 1 2 3 32 32 H 1.08006 * 120.09021 * 0.02562 * 10 9 7 33 33 H 1.07996 * 119.92061 * 179.97438 * 11 10 9 34 34 H 0.97003 * 119.99647 * 217.76361 * 13 12 11 35 35 H 1.08996 * 109.47352 * 60.00353 * 16 14 13 36 36 H 1.09002 * 109.47275 * 299.99862 * 16 14 13 37 37 H 1.09005 * 109.47570 * 60.00027 * 17 16 14 38 38 H 1.09000 * 109.47272 * 299.99633 * 17 16 14 39 39 H 1.08007 * 120.12018 * 359.69017 * 21 20 18 40 40 H 1.07997 * 119.78006 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.95983 * 179.97438 * 25 24 23 42 42 H 1.09002 * 110.29914 * 101.70526 * 26 24 23 43 43 H 1.09003 * 110.30028 * 223.84808 * 26 24 23 44 44 H 1.08999 * 110.81548 * 268.19500 * 27 26 24 45 45 H 1.09000 * 110.98445 * 144.74107 * 27 26 24 46 46 H 1.09003 * 110.29490 * 316.19236 * 28 23 22 47 47 H 1.09000 * 110.29492 * 78.33108 * 28 23 22 48 48 H 1.07997 * 119.90931 * 179.74708 * 29 12 11 49 49 H 1.08000 * 120.08517 * 180.25279 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3849 2.1073 -1.3948 5 1 1.4968 2.6200 0.8027 6 1 3.5890 1.4121 0.5920 7 6 2.0083 -1.2116 0.0005 8 1 2.9624 -1.2845 -0.5003 9 6 1.4672 -2.3387 0.6558 10 6 1.8854 -3.6349 0.2963 11 6 1.3578 -4.7191 0.9334 12 6 0.4060 -4.5469 1.9385 13 7 -0.1284 -5.6588 2.5841 14 6 0.6567 -6.7180 2.8634 15 8 1.8136 -6.7279 2.4996 16 6 0.0971 -7.8900 3.6277 17 6 1.1875 -8.9477 3.8097 18 6 0.6280 -10.1195 4.5745 19 8 -0.5285 -10.1095 4.9386 20 6 1.4854 -11.2761 4.8796 21 6 2.8203 -11.2923 4.4623 22 6 3.6144 -12.3793 4.7533 23 6 3.0994 -13.4576 5.4578 24 6 1.7792 -13.4487 5.8741 25 6 0.9716 -12.3646 5.5889 26 6 1.4684 -14.7317 6.6155 27 6 2.6012 -15.7061 6.2293 28 6 3.7626 -14.7479 5.8919 29 6 -0.0172 -3.2668 2.2960 30 6 0.5053 -2.1729 1.6715 31 1 -0.4850 0.8400 -0.0004 32 1 2.6220 -3.7698 -0.4820 33 1 1.6771 -5.7135 0.6586 34 1 -1.0660 -5.6710 2.8328 35 1 -0.7376 -8.3198 3.0740 36 1 -0.2497 -7.5543 4.6051 37 1 2.0220 -8.5178 4.3637 38 1 1.5346 -9.2836 2.8325 39 1 3.2256 -10.4574 3.9098 40 1 4.6450 -12.3923 4.4309 41 1 -0.0584 -12.3590 5.9138 42 1 1.4702 -14.5568 7.6914 43 1 0.5039 -15.1280 6.2977 44 1 2.3224 -16.2983 5.3578 45 1 2.8627 -16.3523 7.0672 46 1 4.3652 -15.1550 5.0800 47 1 4.3803 -14.5775 6.7737 48 1 -0.7575 -3.1416 3.0723 49 1 0.1796 -1.1821 1.9521 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012759278.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:36 Heat of formation + Delta-G solvation = -57.955930 kcal Electronic energy + Delta-G solvation = -29607.134897 eV Core-core repulsion = 25462.108936 eV Total energy + Delta-G solvation = -4145.025961 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.162 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.54598 -41.08158 -40.06482 -39.02013 -36.49423 -36.20414 -34.79059 -33.96552 -32.48469 -31.48222 -31.07228 -30.40094 -28.37920 -27.59764 -26.12732 -23.90265 -23.23910 -22.98521 -22.38675 -21.73192 -21.05074 -20.11743 -19.31157 -18.51866 -17.99542 -17.36116 -17.04781 -17.02597 -16.79971 -16.42000 -16.03053 -15.88810 -15.72361 -15.68439 -15.01274 -14.86559 -14.60397 -14.32359 -14.20899 -14.04771 -13.92686 -13.76257 -13.74591 -13.46926 -13.26683 -13.01238 -12.84892 -12.79556 -12.68042 -12.47083 -12.32590 -12.18074 -12.05617 -11.90729 -11.83343 -11.69300 -11.57950 -11.13248 -10.82554 -10.73018 -10.44729 -9.88735 -9.55016 -9.47969 -9.01066 -8.72738 -6.23481 -0.38482 0.36112 0.82600 1.13609 1.34848 1.37257 1.43032 1.54973 1.81733 2.19730 2.30536 2.64391 2.73807 2.97961 3.50039 3.57186 3.63285 3.70795 3.98540 4.04485 4.10233 4.11811 4.16878 4.22854 4.28562 4.39067 4.43832 4.50128 4.62335 4.69492 4.74271 4.83409 4.85472 4.90792 4.93385 4.95390 5.02553 5.10573 5.11093 5.16646 5.18304 5.28806 5.30527 5.31499 5.40462 5.45531 5.56570 5.64280 5.87800 5.90051 6.02853 6.09780 6.35493 6.43871 6.61284 6.75813 6.89044 6.99159 7.43171 8.20356 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.029708 B = 0.001366 C = 0.001322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.293294 B =20488.706702 C =21169.783103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.053 3.947 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.506 4.506 8 H 0.075 0.925 9 C 0.082 3.918 10 C -0.245 4.245 11 C -0.075 4.075 12 C -0.010 4.010 13 N -0.646 5.646 14 C 0.500 3.500 15 O -0.573 6.573 16 C -0.117 4.117 17 C -0.145 4.145 18 C 0.409 3.591 19 O -0.483 6.483 20 C -0.188 4.188 21 C -0.072 4.072 22 C -0.127 4.127 23 C -0.072 4.072 24 C -0.126 4.126 25 C -0.064 4.064 26 C -0.084 4.084 27 C -0.117 4.117 28 C -0.087 4.087 29 C -0.102 4.102 30 C -0.189 4.189 31 H 0.294 0.706 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.415 0.585 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.124 0.876 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.121 0.879 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.557 -26.997 13.430 30.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.167 4.167 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.533 4.533 8 H 0.093 0.907 9 C 0.080 3.920 10 C -0.265 4.265 11 C -0.095 4.095 12 C -0.103 4.103 13 N -0.291 5.291 14 C 0.289 3.711 15 O -0.453 6.453 16 C -0.157 4.157 17 C -0.183 4.183 18 C 0.289 3.711 19 O -0.361 6.361 20 C -0.189 4.189 21 C -0.090 4.090 22 C -0.145 4.145 23 C -0.072 4.072 24 C -0.126 4.126 25 C -0.083 4.083 26 C -0.121 4.121 27 C -0.154 4.154 28 C -0.124 4.124 29 C -0.122 4.122 30 C -0.209 4.209 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.252 0.748 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.142 0.858 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.114 0.886 48 H 0.139 0.861 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.514 -26.896 13.364 30.138 hybrid contribution -0.249 1.154 -0.295 1.217 sum 2.265 -25.742 13.069 28.958 Atomic orbital electron populations 1.69944 1.09406 1.31462 1.31421 1.26721 0.95057 1.04435 0.90478 0.85377 0.79649 0.76164 0.79692 1.18366 1.18518 1.18521 1.19716 1.05807 0.95353 1.32445 0.90658 1.17918 0.90782 0.92478 0.90858 1.20735 1.07873 0.92741 1.05106 1.20424 0.97091 0.97585 0.94436 1.17159 1.05793 0.86355 1.00970 1.42937 1.13369 1.15105 1.57682 1.21274 0.85803 0.84424 0.79596 1.90667 1.19253 1.80900 1.54446 1.21385 0.99831 0.92338 1.02165 1.21736 0.99733 0.93657 1.03132 1.22586 0.86623 0.86598 0.75281 1.90501 1.19705 1.80623 1.45275 1.20371 0.96185 0.96894 1.05461 1.21632 0.91936 0.98749 0.96698 1.20938 1.01306 0.92716 0.99535 1.21372 0.94769 0.96414 0.94627 1.20905 0.94766 0.96788 1.00189 1.20935 0.99942 0.91858 0.95531 1.21154 1.00424 0.90634 0.99885 1.22324 0.93474 0.96829 1.02772 1.21245 0.98360 0.90362 1.02413 1.20455 1.00790 0.91118 0.99836 1.20633 1.03274 0.97109 0.99881 0.89488 0.88912 0.87714 0.74830 0.87002 0.87087 0.87007 0.86888 0.83322 0.83392 0.85811 0.89367 0.90194 0.90593 0.88470 0.89106 0.88650 0.86090 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.87 11.78 21.82 0.26 -40.61 16 2 C 0.05 2.63 4.77 85.24 0.41 3.04 16 3 Si 0.97 37.53 29.66 68.60 2.03 39.56 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.51 -27.76 8.94 23.39 0.21 -27.55 16 8 H 0.08 4.05 8.02 -2.91 -0.02 4.03 16 9 C 0.08 4.57 5.57 -21.28 -0.12 4.46 16 10 C -0.24 -12.97 9.74 22.48 0.22 -12.75 16 11 C -0.08 -3.69 8.59 22.14 0.19 -3.50 16 12 C -0.01 -0.43 6.25 38.57 0.24 -0.18 16 13 N -0.65 -21.85 5.30 -303.11 -1.61 -23.46 16 14 C 0.50 16.15 7.64 87.66 0.67 16.82 16 15 O -0.57 -22.99 13.60 -3.04 -0.04 -23.04 16 16 C -0.12 -2.65 4.99 29.85 0.15 -2.50 16 17 C -0.15 -3.02 3.61 29.85 0.11 -2.92 16 18 C 0.41 8.92 7.12 28.03 0.20 9.12 16 19 O -0.48 -12.78 15.97 -2.94 -0.05 -12.83 16 20 C -0.19 -3.77 5.87 -20.18 -0.12 -3.89 16 21 C -0.07 -1.20 9.47 22.54 0.21 -0.99 16 22 C -0.13 -1.82 10.02 22.26 0.22 -1.60 16 23 C -0.07 -1.01 6.15 -19.47 -0.12 -1.13 16 24 C -0.13 -2.02 6.12 -19.61 -0.12 -2.14 16 25 C -0.06 -1.26 9.60 22.61 0.22 -1.05 16 26 C -0.08 -0.86 6.77 30.52 0.21 -0.66 16 27 C -0.12 -0.78 7.07 31.48 0.22 -0.55 16 28 C -0.09 -0.70 6.77 30.52 0.21 -0.50 16 29 C -0.10 -4.65 9.90 22.13 0.22 -4.43 16 30 C -0.19 -9.89 8.74 22.48 0.20 -9.70 16 31 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 32 H 0.09 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.10 5.01 6.45 -2.91 -0.02 4.99 16 34 H 0.41 10.81 8.82 -92.71 -0.82 10.00 16 35 H 0.11 2.23 8.10 -2.39 -0.02 2.21 16 36 H 0.11 2.25 8.10 -2.39 -0.02 2.23 16 37 H 0.11 2.28 8.05 -2.38 -0.02 2.27 16 38 H 0.11 2.27 8.04 -2.39 -0.02 2.25 16 39 H 0.15 2.08 7.07 -2.91 -0.02 2.06 16 40 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 41 H 0.12 2.47 7.64 -2.91 -0.02 2.45 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 49 H 0.10 5.18 6.52 -2.91 -0.02 5.16 16 Total: -1.00 -70.07 409.44 4.38 -65.68 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: 0.17 Total: 37.28 kcal Atomic # 6 Polarization: -46.21 SS G_CDS: 3.62 Total: -42.59 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -1.35 Total: -64.07 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -0.09 Total: -35.86 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -70.07 4.38 -65.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012759278.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.728 kcal (2) G-P(sol) polarization free energy of solvation -70.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds