Wall clock time and date at job start Tue Mar 31 2020 05:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86793 * 119.99763 * 2 1 4 4 H 1.48507 * 109.47182 * 274.98988 * 3 2 1 5 5 H 1.48502 * 109.47083 * 34.98829 * 3 2 1 6 6 H 1.48497 * 109.47346 * 154.99110 * 3 2 1 7 7 C 1.39903 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00552 * 147.96754 * 7 2 1 9 9 C 1.41135 * 119.99529 * 327.97266 * 7 2 1 10 10 C 1.40888 * 120.15692 * 157.38920 * 9 7 2 11 11 C 1.36354 * 119.82882 * 180.02562 * 10 9 7 12 12 C 1.39522 * 120.16692 * 0.02562 * 11 10 9 13 13 N 1.39088 * 119.83760 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99789 * 37.91551 * 13 12 11 15 15 O 1.21705 * 120.00110 * 356.38337 * 14 13 12 16 16 C 1.46592 * 119.99849 * 176.66989 * 14 13 12 17 17 O 1.34915 * 125.99200 * 359.40160 * 16 14 13 18 18 C 1.33944 * 109.38269 * 179.82830 * 17 16 14 19 19 C 1.35141 * 108.77236 * 0.44971 * 18 17 16 20 20 C 1.36597 * 125.98778 * 179.72168 * 16 14 13 21 21 C 1.50699 * 126.64881 * 359.96270 * 20 16 14 22 22 O 1.42896 * 109.46849 * 180.02562 * 21 20 16 23 23 C 1.35907 * 116.99908 * 179.97438 * 22 21 20 24 24 C 1.38732 * 120.05433 * 359.72418 * 23 22 21 25 25 C 1.38147 * 119.94187 * 179.74535 * 24 23 22 26 26 C 1.38264 * 120.05350 * 0.50661 * 25 24 23 27 27 C 1.38268 * 120.11425 * 359.76997 * 26 25 24 28 28 C 1.38141 * 120.05646 * 359.97438 * 27 26 25 29 29 C 1.39527 * 120.32569 * 0.25187 * 12 11 10 30 30 C 1.36356 * 120.16409 * 359.44687 * 29 12 11 31 31 H 0.96992 * 120.00527 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.08505 * 359.97438 * 10 9 7 33 33 H 1.08005 * 119.91632 * 180.02562 * 11 10 9 34 34 H 0.96998 * 120.00353 * 217.90134 * 13 12 11 35 35 H 1.08001 * 125.61206 * 180.13775 * 18 17 16 36 36 H 1.07994 * 126.44211 * 179.71268 * 19 18 17 37 37 H 1.09005 * 109.46587 * 299.99439 * 21 20 16 38 38 H 1.08989 * 109.47603 * 60.00104 * 21 20 16 39 39 H 1.07999 * 120.02428 * 359.97438 * 24 23 22 40 40 H 1.07999 * 119.96799 * 180.27532 * 25 24 23 41 41 H 1.08005 * 119.93897 * 179.74488 * 26 25 24 42 42 H 1.07998 * 119.96762 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.03176 * 179.97438 * 28 27 26 44 44 H 1.08001 * 119.91859 * 179.69926 * 29 12 11 45 45 H 1.08000 * 120.08472 * 180.27231 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3847 2.1073 -1.3948 5 1 1.4967 2.6199 0.8028 6 1 3.5890 1.4121 0.5919 7 6 2.0083 -1.2116 -0.0005 8 1 2.9650 -1.2826 -0.4966 9 6 1.4638 -2.3411 0.6472 10 6 1.8753 -3.6365 0.2765 11 6 1.3444 -4.7231 0.9063 12 6 0.3955 -4.5544 1.9152 13 7 -0.1419 -5.6676 2.5528 14 6 0.6399 -6.7312 2.8249 15 8 1.7991 -6.7449 2.4545 16 6 0.0922 -7.8742 3.5615 17 8 -1.1675 -7.9842 4.0319 18 6 -1.3102 -9.1648 4.6483 19 6 -0.1353 -9.8300 4.5913 20 6 0.7695 -9.0119 3.8972 21 6 2.2091 -9.3277 3.5825 22 8 2.5390 -10.6163 4.1045 23 6 3.8094 -11.0561 3.9049 24 6 4.7179 -10.2660 3.2157 25 6 6.0101 -10.7130 3.0186 26 6 6.3952 -11.9512 3.4986 27 6 5.4900 -12.7429 4.1808 28 6 4.1982 -12.2983 4.3851 29 6 -0.0211 -3.2749 2.2837 30 6 0.5055 -2.1787 1.6670 31 1 -0.4850 0.8399 0.0004 32 1 2.6088 -3.7686 -0.5052 33 1 1.6592 -5.7168 0.6236 34 1 -1.0793 -5.6785 2.8018 35 1 -2.2140 -9.5236 5.1183 36 1 0.0692 -10.8074 5.0028 37 1 2.3536 -9.3259 2.5021 38 1 2.8538 -8.5754 4.0366 39 1 4.4162 -9.3007 2.8367 40 1 6.7190 -10.0964 2.4860 41 1 7.4048 -12.3006 3.3399 42 1 5.7933 -13.7098 4.5543 43 1 3.4914 -12.9172 4.9176 44 1 -0.7596 -3.1522 3.0622 45 1 0.1852 -1.1886 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012797965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:47 Heat of formation + Delta-G solvation = -6.165382 kcal Electronic energy + Delta-G solvation = -30181.558627 eV Core-core repulsion = 25902.945378 eV Total energy + Delta-G solvation = -4278.613249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.130 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.84671 -40.19902 -39.54174 -37.62936 -37.27425 -34.72626 -33.73741 -33.09342 -31.23438 -30.62723 -29.99842 -29.63008 -28.98951 -27.14495 -25.15057 -23.17201 -22.71009 -22.45198 -21.60535 -21.13192 -20.39279 -19.69527 -18.26110 -18.19886 -17.41941 -16.64891 -16.58433 -16.31165 -16.06849 -15.78252 -15.51952 -15.26923 -14.61249 -14.43323 -14.33365 -14.01167 -13.66416 -13.54433 -13.24503 -13.15833 -12.98872 -12.88469 -12.67264 -12.18055 -12.10698 -12.04419 -11.75212 -11.57315 -11.45710 -11.20190 -11.03189 -10.97233 -10.60994 -10.32733 -9.88743 -9.83973 -9.71934 -9.22233 -9.18192 -8.84620 -8.72178 -8.36030 -7.62564 -7.22722 -6.95546 -4.34492 0.97060 1.16363 1.27352 2.20150 2.55468 2.65533 2.96721 2.98252 3.01972 3.04975 3.12280 3.44903 3.62257 3.63589 3.84242 4.43853 4.46122 4.66988 4.69085 4.77496 4.94095 4.97893 5.12358 5.21237 5.27056 5.29799 5.38217 5.46330 5.59469 5.72170 5.77105 5.84048 6.12396 6.14146 6.14562 6.24567 6.33693 6.35914 6.58153 6.63068 6.69289 6.90763 6.92850 7.04958 7.19694 7.25694 7.48804 7.59615 7.76588 7.94588 8.15014 8.17881 8.45301 8.56733 8.76610 8.90438 9.95333 Molecular weight = 363.13amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.002033 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.733477 B =13770.164796 C =15943.242954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.461 4.461 8 H 0.083 0.917 9 C 0.115 3.885 10 C -0.224 4.224 11 C -0.062 4.062 12 C -0.031 4.031 13 N -0.628 5.628 14 C 0.579 3.421 15 O -0.515 6.515 16 C -0.052 4.052 17 O -0.159 6.159 18 C -0.017 4.017 19 C -0.200 4.200 20 C -0.106 4.106 21 C 0.134 3.866 22 O -0.314 6.314 23 C 0.134 3.866 24 C -0.207 4.207 25 C -0.078 4.078 26 C -0.162 4.162 27 C -0.084 4.084 28 C -0.155 4.155 29 C -0.096 4.096 30 C -0.171 4.171 31 H 0.284 0.716 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.400 0.600 35 H 0.211 0.789 36 H 0.159 0.841 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.091 0.909 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.213 -19.190 9.122 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.112 3.888 10 C -0.244 4.244 11 C -0.082 4.082 12 C -0.123 4.123 13 N -0.269 5.269 14 C 0.366 3.634 15 O -0.394 6.394 16 C -0.105 4.105 17 O -0.054 6.054 18 C -0.086 4.086 19 C -0.219 4.219 20 C -0.109 4.109 21 C 0.060 3.940 22 O -0.228 6.228 23 C 0.088 3.912 24 C -0.225 4.225 25 C -0.096 4.096 26 C -0.181 4.181 27 C -0.102 4.102 28 C -0.174 4.174 29 C -0.116 4.116 30 C -0.190 4.190 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.234 0.766 35 H 0.227 0.773 36 H 0.176 0.824 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.152 0.848 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.109 0.891 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.412 -18.882 8.896 20.920 hybrid contribution -0.195 0.767 0.143 0.804 sum 1.217 -18.115 9.038 20.281 Atomic orbital electron populations 1.69934 1.08099 1.30030 1.30854 1.25968 0.94402 1.01627 0.91529 0.86482 0.81509 0.80685 0.79270 1.19397 1.19833 1.18033 1.19539 1.05158 0.93642 1.30541 0.89869 1.17621 0.89558 0.91909 0.89735 1.20593 1.07161 0.92250 1.04394 1.20297 0.96160 0.98053 0.93664 1.17011 1.08050 0.84465 1.02744 1.42770 1.12165 1.15199 1.56782 1.16546 0.85613 0.81211 0.80056 1.90849 1.16258 1.79249 1.53026 1.22011 0.83263 0.98435 1.06788 1.84113 1.29408 1.35441 1.56418 1.24350 1.00711 0.83987 0.99551 1.21589 0.92478 1.02577 1.05289 1.20040 0.95930 0.93816 1.01120 1.20931 0.91036 0.82654 0.99399 1.85955 1.26567 1.35309 1.74993 1.19006 0.83503 0.93611 0.95045 1.21466 0.94909 1.01762 1.04399 1.21011 0.95296 0.95755 0.97580 1.21069 0.99996 0.95375 1.01635 1.20936 0.92428 0.99408 0.97475 1.20412 0.97231 0.94828 1.04927 1.20175 1.00469 0.91459 0.99537 1.20619 1.02565 0.96615 0.99242 0.90472 0.88586 0.87880 0.76592 0.77270 0.82351 0.89658 0.89608 0.84788 0.85653 0.86027 0.85540 0.85370 0.89117 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.96 11.79 55.55 0.65 -18.31 16 2 C 0.09 2.10 4.77 -17.34 -0.08 2.02 16 3 Si 0.90 17.84 29.66 -169.99 -5.04 12.80 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.92 8.94 -37.86 -0.34 -12.26 16 8 H 0.08 2.08 8.01 -52.49 -0.42 1.66 16 9 C 0.11 3.00 5.57 -106.80 -0.59 2.41 16 10 C -0.22 -5.57 9.74 -39.26 -0.38 -5.96 16 11 C -0.06 -1.46 8.59 -39.78 -0.34 -1.80 16 12 C -0.03 -0.68 6.25 -83.61 -0.52 -1.20 16 13 N -0.63 -11.42 5.29 -10.95 -0.06 -11.48 16 14 C 0.58 10.42 7.59 -12.89 -0.10 10.32 16 15 O -0.52 -10.50 13.13 5.18 0.07 -10.44 16 16 C -0.05 -0.78 7.13 -36.81 -0.26 -1.04 16 17 O -0.16 -1.99 10.40 4.96 0.05 -1.94 16 18 C -0.02 -0.16 12.08 29.63 0.36 0.20 16 19 C -0.20 -2.20 10.24 -39.89 -0.41 -2.61 16 20 C -0.11 -1.46 6.16 -104.42 -0.64 -2.10 16 21 C 0.13 1.82 3.95 36.01 0.14 1.96 16 22 O -0.31 -4.06 9.57 -19.45 -0.19 -4.24 16 23 C 0.13 1.63 6.69 -39.21 -0.26 1.37 16 24 C -0.21 -2.47 9.04 -39.43 -0.36 -2.82 16 25 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 26 C -0.16 -1.48 10.04 -39.56 -0.40 -1.88 16 27 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 28 C -0.16 -1.61 9.99 -39.43 -0.39 -2.00 16 29 C -0.10 -2.17 9.90 -39.78 -0.39 -2.57 16 30 C -0.17 -4.28 8.73 -39.26 -0.34 -4.62 16 31 H 0.28 6.31 8.30 -40.82 -0.34 5.98 16 32 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 33 H 0.10 2.36 6.44 -52.48 -0.34 2.02 16 34 H 0.40 6.10 8.58 -40.82 -0.35 5.75 16 35 H 0.21 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.16 1.46 7.98 -52.49 -0.42 1.05 16 37 H 0.09 1.19 7.56 -51.93 -0.39 0.80 16 38 H 0.09 1.21 7.59 -51.94 -0.39 0.82 16 39 H 0.13 1.63 6.30 -52.49 -0.33 1.30 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.11 2.74 6.55 -52.49 -0.34 2.39 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -29.66 390.34 -9.83 -39.49 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.08 Total: 13.17 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -6.12 Total: -24.93 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: 0.60 Total: -29.79 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.07 Total: -16.62 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.04 Total: 12.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.66 -9.83 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012797965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.324 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds