Wall clock time and date at job start Tue Mar 31 2020 05:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86793 * 119.99763 * 2 1 4 4 H 1.48507 * 109.47182 * 274.98988 * 3 2 1 5 5 H 1.48502 * 109.47083 * 34.98829 * 3 2 1 6 6 H 1.48497 * 109.47346 * 154.99110 * 3 2 1 7 7 C 1.39903 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00552 * 147.96754 * 7 2 1 9 9 C 1.41135 * 119.99529 * 327.97266 * 7 2 1 10 10 C 1.40888 * 120.15692 * 157.38920 * 9 7 2 11 11 C 1.36354 * 119.82882 * 180.02562 * 10 9 7 12 12 C 1.39522 * 120.16692 * 0.02562 * 11 10 9 13 13 N 1.39088 * 119.83760 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99789 * 37.91551 * 13 12 11 15 15 O 1.21705 * 120.00110 * 356.38337 * 14 13 12 16 16 C 1.46592 * 119.99849 * 176.66989 * 14 13 12 17 17 O 1.34915 * 125.99200 * 359.40160 * 16 14 13 18 18 C 1.33944 * 109.38269 * 179.82830 * 17 16 14 19 19 C 1.35141 * 108.77236 * 0.44971 * 18 17 16 20 20 C 1.36597 * 125.98778 * 179.72168 * 16 14 13 21 21 C 1.50699 * 126.64881 * 359.96270 * 20 16 14 22 22 O 1.42896 * 109.46849 * 180.02562 * 21 20 16 23 23 C 1.35907 * 116.99908 * 179.97438 * 22 21 20 24 24 C 1.38732 * 120.05433 * 359.72418 * 23 22 21 25 25 C 1.38147 * 119.94187 * 179.74535 * 24 23 22 26 26 C 1.38264 * 120.05350 * 0.50661 * 25 24 23 27 27 C 1.38268 * 120.11425 * 359.76997 * 26 25 24 28 28 C 1.38141 * 120.05646 * 359.97438 * 27 26 25 29 29 C 1.39527 * 120.32569 * 0.25187 * 12 11 10 30 30 C 1.36356 * 120.16409 * 359.44687 * 29 12 11 31 31 H 0.96992 * 120.00527 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.08505 * 359.97438 * 10 9 7 33 33 H 1.08005 * 119.91632 * 180.02562 * 11 10 9 34 34 H 0.96998 * 120.00353 * 217.90134 * 13 12 11 35 35 H 1.08001 * 125.61206 * 180.13775 * 18 17 16 36 36 H 1.07994 * 126.44211 * 179.71268 * 19 18 17 37 37 H 1.09005 * 109.46587 * 299.99439 * 21 20 16 38 38 H 1.08989 * 109.47603 * 60.00104 * 21 20 16 39 39 H 1.07999 * 120.02428 * 359.97438 * 24 23 22 40 40 H 1.07999 * 119.96799 * 180.27532 * 25 24 23 41 41 H 1.08005 * 119.93897 * 179.74488 * 26 25 24 42 42 H 1.07998 * 119.96762 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.03176 * 179.97438 * 28 27 26 44 44 H 1.08001 * 119.91859 * 179.69926 * 29 12 11 45 45 H 1.08000 * 120.08472 * 180.27231 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3847 2.1073 -1.3948 5 1 1.4967 2.6199 0.8028 6 1 3.5890 1.4121 0.5919 7 6 2.0083 -1.2116 -0.0005 8 1 2.9650 -1.2826 -0.4966 9 6 1.4638 -2.3411 0.6472 10 6 1.8753 -3.6365 0.2765 11 6 1.3444 -4.7231 0.9063 12 6 0.3955 -4.5544 1.9152 13 7 -0.1419 -5.6676 2.5528 14 6 0.6399 -6.7312 2.8249 15 8 1.7991 -6.7449 2.4545 16 6 0.0922 -7.8742 3.5615 17 8 -1.1675 -7.9842 4.0319 18 6 -1.3102 -9.1648 4.6483 19 6 -0.1353 -9.8300 4.5913 20 6 0.7695 -9.0119 3.8972 21 6 2.2091 -9.3277 3.5825 22 8 2.5390 -10.6163 4.1045 23 6 3.8094 -11.0561 3.9049 24 6 4.7179 -10.2660 3.2157 25 6 6.0101 -10.7130 3.0186 26 6 6.3952 -11.9512 3.4986 27 6 5.4900 -12.7429 4.1808 28 6 4.1982 -12.2983 4.3851 29 6 -0.0211 -3.2749 2.2837 30 6 0.5055 -2.1787 1.6670 31 1 -0.4850 0.8399 0.0004 32 1 2.6088 -3.7686 -0.5052 33 1 1.6592 -5.7168 0.6236 34 1 -1.0793 -5.6785 2.8018 35 1 -2.2140 -9.5236 5.1183 36 1 0.0692 -10.8074 5.0028 37 1 2.3536 -9.3259 2.5021 38 1 2.8538 -8.5754 4.0366 39 1 4.4162 -9.3007 2.8367 40 1 6.7190 -10.0964 2.4860 41 1 7.4048 -12.3006 3.3399 42 1 5.7933 -13.7098 4.5543 43 1 3.4914 -12.9172 4.9176 44 1 -0.7596 -3.1522 3.0622 45 1 0.1852 -1.1886 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012797965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:46 Heat of formation + Delta-G solvation = -21.224674 kcal Electronic energy + Delta-G solvation = -30182.211647 eV Core-core repulsion = 25902.945378 eV Total energy + Delta-G solvation = -4279.266269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.130 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.83096 -41.11705 -41.05949 -39.07532 -38.45842 -36.36437 -35.02070 -34.60140 -32.05501 -31.78002 -31.48419 -30.96900 -30.51393 -28.29414 -26.81609 -24.45449 -23.61729 -23.40373 -23.14571 -22.52505 -21.79228 -20.97591 -19.51499 -19.22606 -19.13327 -18.09552 -17.68716 -17.47553 -17.04772 -16.86787 -16.80070 -16.42123 -15.99204 -15.78626 -15.69348 -15.35419 -14.91714 -14.59035 -14.49683 -14.36194 -14.14745 -14.01110 -13.92155 -13.82090 -13.74823 -13.39289 -13.03325 -12.85817 -12.72812 -12.49537 -12.40519 -12.37540 -11.99500 -11.80194 -11.64715 -11.36231 -10.99744 -10.83078 -10.58349 -9.97713 -9.77010 -9.52577 -9.22321 -9.05250 -8.76292 -6.27044 -0.14912 0.36822 0.45813 0.83696 1.10593 1.32414 1.37737 1.44568 1.54554 1.58832 2.00116 2.02794 2.18545 2.29473 2.61766 2.82445 3.53314 3.63862 3.72384 3.84265 3.90462 3.98176 4.12518 4.14394 4.27928 4.34770 4.39483 4.44046 4.48116 4.52385 4.68551 4.74939 4.85772 4.93556 5.05277 5.07366 5.09065 5.21446 5.28945 5.33948 5.36337 5.47410 5.58484 5.59623 5.69643 5.81644 5.86245 5.97449 6.03506 6.30332 6.33490 6.54399 6.59041 6.85501 6.91415 7.15576 8.17705 Molecular weight = 363.13amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.002033 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.733477 B =13770.164796 C =15943.242954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.051 3.949 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.500 4.500 8 H 0.077 0.923 9 C 0.086 3.914 10 C -0.243 4.243 11 C -0.071 4.071 12 C -0.017 4.017 13 N -0.627 5.627 14 C 0.582 3.418 15 O -0.548 6.548 16 C -0.085 4.085 17 O -0.161 6.161 18 C 0.022 3.978 19 C -0.217 4.217 20 C -0.103 4.103 21 C 0.141 3.859 22 O -0.316 6.316 23 C 0.107 3.893 24 C -0.228 4.228 25 C -0.091 4.091 26 C -0.160 4.160 27 C -0.080 4.080 28 C -0.160 4.160 29 C -0.096 4.096 30 C -0.188 4.188 31 H 0.295 0.705 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.416 0.584 35 H 0.266 0.734 36 H 0.178 0.822 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.137 0.863 41 H 0.150 0.850 42 H 0.161 0.839 43 H 0.145 0.855 44 H 0.122 0.878 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 -21.230 11.123 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.169 4.169 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.095 0.905 9 C 0.083 3.917 10 C -0.263 4.263 11 C -0.091 4.091 12 C -0.110 4.110 13 N -0.270 5.270 14 C 0.371 3.629 15 O -0.429 6.429 16 C -0.138 4.138 17 O -0.056 6.056 18 C -0.047 4.047 19 C -0.235 4.235 20 C -0.107 4.107 21 C 0.066 3.934 22 O -0.230 6.230 23 C 0.062 3.938 24 C -0.247 4.247 25 C -0.109 4.109 26 C -0.178 4.178 27 C -0.098 4.098 28 C -0.178 4.178 29 C -0.115 4.115 30 C -0.208 4.208 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.253 0.747 35 H 0.281 0.719 36 H 0.195 0.805 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.178 0.822 43 H 0.162 0.838 44 H 0.140 0.860 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.551 -20.946 10.902 23.619 hybrid contribution 0.034 1.086 -0.376 1.150 sum 0.585 -19.859 10.526 22.484 Atomic orbital electron populations 1.69931 1.09377 1.31595 1.31009 1.26749 0.95111 1.04513 0.90518 0.85355 0.79630 0.76082 0.79702 1.18374 1.18482 1.18510 1.19734 1.05548 0.95110 1.32329 0.90472 1.17934 0.90571 0.92485 0.90687 1.20726 1.07912 0.92617 1.05079 1.20410 0.96798 0.97664 0.94262 1.17061 1.06638 0.85715 1.01554 1.42644 1.13076 1.14329 1.56941 1.16874 0.85193 0.81505 0.79310 1.90829 1.17750 1.80086 1.54226 1.21217 0.84854 0.98035 1.09650 1.84111 1.27951 1.36904 1.56613 1.25443 1.01693 0.81710 0.95816 1.21868 0.92415 1.03445 1.05812 1.20282 0.96017 0.93957 1.00399 1.20695 0.91250 0.82953 0.98506 1.85922 1.27275 1.34620 1.75184 1.19328 0.83295 0.94755 0.96453 1.21497 0.96086 1.01572 1.05526 1.21266 0.94812 0.96832 0.97948 1.21455 1.01376 0.94528 1.00441 1.21373 0.91541 1.00525 0.96357 1.20733 0.98364 0.94080 1.04644 1.20433 1.00572 0.90866 0.99670 1.20637 1.03291 0.97069 0.99806 0.89369 0.88667 0.87792 0.74696 0.71882 0.80454 0.90984 0.91091 0.86432 0.84523 0.83273 0.82161 0.83759 0.85982 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.13 11.79 21.82 0.26 -39.87 16 2 C 0.05 2.52 4.77 85.24 0.41 2.93 16 3 Si 0.97 37.05 29.66 68.60 2.03 39.09 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.50 -27.04 8.94 23.38 0.21 -26.83 16 8 H 0.08 4.09 8.01 -2.91 -0.02 4.06 16 9 C 0.09 4.72 5.57 -21.27 -0.12 4.60 16 10 C -0.24 -12.80 9.74 22.48 0.22 -12.59 16 11 C -0.07 -3.51 8.59 22.14 0.19 -3.32 16 12 C -0.02 -0.76 6.25 38.61 0.24 -0.51 16 13 N -0.63 -22.80 5.29 -306.76 -1.62 -24.42 16 14 C 0.58 21.37 7.59 86.42 0.66 22.02 16 15 O -0.55 -23.49 13.13 -4.36 -0.06 -23.55 16 16 C -0.09 -2.50 7.13 24.07 0.17 -2.33 16 17 O -0.16 -3.62 10.40 -5.17 -0.05 -3.68 16 18 C 0.02 0.33 12.08 67.11 0.81 1.14 16 19 C -0.22 -4.18 10.24 22.07 0.23 -3.95 16 20 C -0.10 -2.80 6.16 -19.73 -0.12 -2.93 16 21 C 0.14 4.03 3.95 71.24 0.28 4.31 16 22 O -0.32 -8.27 9.57 -92.51 -0.89 -9.16 16 23 C 0.11 2.64 6.69 22.51 0.15 2.79 16 24 C -0.23 -5.75 9.04 22.37 0.20 -5.55 16 25 C -0.09 -1.86 10.04 22.25 0.22 -1.64 16 26 C -0.16 -2.60 10.04 22.28 0.22 -2.37 16 27 C -0.08 -1.22 10.04 22.25 0.22 -1.00 16 28 C -0.16 -3.07 9.99 22.37 0.22 -2.85 16 29 C -0.10 -4.34 9.90 22.14 0.22 -4.12 16 30 C -0.19 -9.74 8.73 22.48 0.20 -9.54 16 31 H 0.30 13.18 8.30 -92.71 -0.77 12.41 16 32 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 33 H 0.10 5.01 6.44 -2.91 -0.02 4.99 16 34 H 0.42 12.28 8.58 -92.71 -0.80 11.48 16 35 H 0.27 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.18 2.71 7.98 -2.91 -0.02 2.69 16 37 H 0.07 2.21 7.56 -2.38 -0.02 2.19 16 38 H 0.07 2.20 7.59 -2.39 -0.02 2.18 16 39 H 0.12 3.23 6.30 -2.91 -0.02 3.21 16 40 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 41 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 42 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 43 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 45 H 0.10 5.23 6.55 -2.91 -0.02 5.21 16 Total: -1.00 -68.71 390.34 4.76 -63.95 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: 0.25 Total: 39.39 kcal Atomic # 6 Polarization: -46.58 SS G_CDS: 4.83 Total: -41.75 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -1.36 Total: -64.29 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.00 Total: -36.38 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.09 kcal Total: -68.71 4.76 -63.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012797965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.724 kcal (2) G-P(sol) polarization free energy of solvation -68.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds