Wall clock time and date at job start Tue Mar 31 2020 06:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46498 * 120.00457 * 2 1 4 4 C 1.50706 * 109.47073 * 270.00492 * 3 2 1 5 5 H 1.07999 * 119.99783 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99833 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99812 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 120.00371 * 359.97438 * 6 4 3 9 9 H 1.48494 * 109.47011 * 89.99769 * 8 6 4 10 10 H 1.48499 * 109.46914 * 210.00165 * 8 6 4 11 11 H 1.48498 * 109.46734 * 330.00017 * 8 6 4 12 12 C 1.34778 * 119.99851 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00060 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00210 * 359.97438 * 12 2 1 15 15 S 1.80994 * 109.47351 * 180.02562 * 14 12 2 16 16 C 1.76201 * 100.00144 * 180.02562 * 15 14 12 17 17 N 1.31455 * 125.92877 * 359.68233 * 16 15 14 18 18 C 1.34382 * 109.62744 * 180.27219 * 17 16 15 19 19 C 1.47250 * 125.61084 * 179.97438 * 18 17 16 20 20 C 1.34689 * 120.00056 * 180.02562 * 19 18 17 21 21 C 1.46559 * 120.00238 * 179.97438 * 20 19 18 22 22 C 1.36394 * 125.34563 * 179.71417 * 21 20 19 23 23 C 1.37736 * 114.39098 * 179.85852 * 22 21 20 24 24 C 1.33705 * 115.21076 * 0.43134 * 23 22 21 25 25 S 1.75818 * 109.99940 * 359.76570 * 24 23 22 26 26 N 1.31765 * 108.77832 * 359.97438 * 18 17 16 27 27 N 1.35215 * 125.93481 * 180.02562 * 16 15 14 28 28 H 0.96998 * 126.71148 * 359.76204 * 27 16 15 29 29 H 1.09008 * 109.47098 * 270.00422 * 1 2 3 30 30 H 1.09002 * 109.47142 * 29.99636 * 1 2 3 31 31 H 1.09000 * 109.47864 * 149.99889 * 1 2 3 32 32 H 1.09007 * 109.46848 * 29.99870 * 3 2 1 33 33 H 1.08999 * 109.47545 * 150.00209 * 3 2 1 34 34 H 0.97000 * 119.99878 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.47198 * 59.99421 * 14 12 2 36 36 H 1.09003 * 109.46759 * 300.00470 * 14 12 2 37 37 H 1.07997 * 119.99892 * 0.04131 * 19 18 17 38 38 H 1.08006 * 120.00293 * 359.97438 * 20 19 18 39 39 H 1.08002 * 122.80599 * 359.97438 * 22 21 20 40 40 H 1.08001 * 122.39422 * 180.17610 * 23 22 21 41 41 H 1.08003 * 125.00036 * 179.76423 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.3456 3.2573 -2.9127 8 14 3.7319 3.9298 -0.2530 9 1 5.1052 3.5090 0.1240 10 1 3.7468 5.3564 -0.6651 11 1 2.8253 3.7602 0.9108 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 16 2.5614 -3.8481 -0.0005 16 6 1.4413 -5.2082 -0.0013 17 7 0.1293 -5.1270 0.0042 18 6 -0.3994 -6.3624 0.0076 19 6 -1.8373 -6.6797 0.0145 20 6 -2.2437 -7.9638 0.0179 21 6 -3.6748 -8.2796 0.0253 22 6 -4.2056 -9.5360 0.0237 23 6 -5.5825 -9.5718 0.0350 24 6 -6.1832 -8.3773 0.0366 25 16 -4.9774 -7.0978 0.0301 26 7 0.5806 -7.2432 0.0037 27 7 1.7820 -6.5168 -0.0011 28 1 2.6806 -6.8820 -0.0037 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3635 -0.8899 -0.5138 32 1 1.6084 2.0284 0.5139 33 1 3.1500 1.1383 0.5138 34 1 3.8225 4.0832 -3.0899 35 1 0.7582 -2.5298 -0.8903 36 1 0.7589 -2.5302 0.8897 37 1 -2.5661 -5.8827 0.0166 38 1 -1.5149 -8.7609 0.0151 39 1 -3.5972 -10.4283 0.0162 40 1 -6.1372 -10.4985 0.0380 41 1 -7.2519 -8.2214 0.0412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012923359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:11 Heat of formation + Delta-G solvation = 109.794264 kcal Electronic energy + Delta-G solvation = -25299.881074 eV Core-core repulsion = 21435.526780 eV Total energy + Delta-G solvation = -3864.354293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.077 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07363 -39.19235 -38.18174 -35.14940 -35.08785 -32.74438 -32.59422 -31.41914 -30.34244 -28.75451 -27.97029 -25.93698 -25.10443 -23.72122 -22.48835 -22.32337 -20.27582 -19.72387 -19.14424 -18.41814 -17.50611 -17.03669 -16.62411 -16.41866 -16.10340 -15.93968 -15.40901 -15.27359 -14.88053 -14.23368 -14.02234 -13.64733 -13.59085 -13.23295 -13.01452 -12.97798 -12.72857 -12.49650 -12.36239 -12.25488 -12.20697 -12.08565 -11.58156 -11.55555 -11.12021 -10.99608 -10.82932 -10.56373 -10.54353 -10.43350 -10.20484 -10.14586 -9.62403 -9.34461 -8.92006 -8.63439 -8.40856 -7.95155 -7.82915 -6.12973 -4.12830 -0.04210 0.76505 1.10735 1.17564 1.56790 1.65193 1.80196 2.42545 2.56335 3.04870 3.05569 3.26279 3.32080 3.34006 3.67046 3.83607 4.30997 4.35475 4.63640 4.69010 4.77243 4.84188 4.98826 5.05111 5.13345 5.20085 5.33110 5.48357 5.57113 5.77623 5.78256 5.80515 5.84427 5.95232 6.08638 6.09567 6.10943 6.57270 6.58343 6.83612 7.15400 7.53689 7.62820 8.00957 8.38817 8.67841 8.90123 9.46180 11.00174 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.001712 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.404462 B =16352.105263 C =17754.154756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.587 5.587 3 C 0.216 3.784 4 C -0.533 4.533 5 H 0.076 0.924 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.523 3.477 13 O -0.528 6.528 14 C -0.138 4.138 15 S 0.090 5.910 16 C 0.254 3.746 17 N -0.532 5.532 18 C 0.265 3.735 19 C -0.067 4.067 20 C -0.038 4.038 21 C -0.163 4.163 22 C -0.120 4.120 23 C -0.136 4.136 24 C -0.216 4.216 25 S 0.133 5.867 26 N -0.303 5.303 27 N -0.463 5.463 28 H 0.446 0.554 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.457 -25.039 8.258 31.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.318 5.318 3 C 0.096 3.904 4 C -0.571 4.571 5 H 0.094 0.906 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.307 3.693 13 O -0.406 6.406 14 C -0.290 4.290 15 S 0.316 5.684 16 C -0.132 4.132 17 N -0.265 5.265 18 C -0.015 4.015 19 C -0.089 4.089 20 C -0.062 4.062 21 C -0.280 4.280 22 C -0.151 4.151 23 C -0.166 4.166 24 C -0.352 4.352 25 S 0.399 5.601 26 N -0.135 5.135 27 N -0.184 5.184 28 H 0.293 0.707 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.969 -23.669 8.147 29.166 hybrid contribution -0.457 -1.033 0.472 1.224 sum -15.425 -24.702 8.619 30.371 Atomic orbital electron populations 1.21779 0.80335 1.03501 1.00957 1.47733 1.06628 1.06582 1.70876 1.19753 0.92529 0.79512 0.98646 1.21301 1.37371 1.07329 0.91121 0.90636 1.24852 0.95157 0.97310 0.95610 1.69893 1.41202 1.23547 1.18662 0.86851 0.80154 0.79832 0.82859 1.19849 1.21003 1.19037 1.19357 0.87659 0.84071 0.78191 1.90726 1.13199 1.86483 1.50174 1.23879 1.01720 0.94273 1.09178 1.86581 1.01273 0.89472 1.91029 1.27000 0.95803 0.91504 0.98865 1.71213 1.04126 1.24291 1.26845 1.22379 0.94528 0.86492 0.98147 1.20829 0.88477 0.96654 1.02966 1.21336 0.91238 0.96835 0.96836 1.23399 0.96468 0.96600 1.11543 1.20750 0.94843 0.96815 1.02732 1.20056 0.94170 0.98540 1.03878 1.25851 1.03381 0.95934 1.10033 1.84373 0.95648 1.09252 1.70832 1.78178 0.89793 1.18151 1.27368 1.47746 1.09143 1.03236 1.58261 0.70693 0.93136 0.90110 0.91767 0.94812 0.94301 0.92477 0.85673 0.85927 0.84379 0.84113 0.83827 0.84074 0.81700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.24 59.84 0.61 1.73 16 2 N -0.59 -11.45 2.86 -182.95 -0.52 -11.97 16 3 C 0.22 5.08 4.23 -5.19 -0.02 5.06 16 4 C -0.53 -14.93 9.94 -34.44 -0.34 -15.27 16 5 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 8 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 12 C 0.52 10.01 7.69 -10.99 -0.08 9.92 16 13 O -0.53 -12.18 15.44 5.56 0.09 -12.09 16 14 C -0.14 -1.95 4.24 36.01 0.15 -1.80 16 15 S 0.09 1.21 21.45 -107.50 -2.31 -1.10 16 16 C 0.25 3.22 8.30 -89.42 -0.74 2.48 16 17 N -0.53 -7.23 10.60 -11.45 -0.12 -7.35 16 18 C 0.26 3.36 7.88 -156.56 -1.23 2.12 16 19 C -0.07 -0.68 9.77 -37.18 -0.36 -1.05 16 20 C -0.04 -0.33 9.69 -37.49 -0.36 -0.70 16 21 C -0.16 -1.33 6.37 -36.89 -0.24 -1.56 16 22 C -0.12 -0.84 10.18 -40.43 -0.41 -1.25 16 23 C -0.14 -0.84 10.15 -41.35 -0.42 -1.26 16 24 C -0.22 -1.34 11.21 29.14 0.33 -1.01 16 25 S 0.13 0.99 22.13 -107.50 -2.38 -1.39 16 26 N -0.30 -3.75 12.31 31.94 0.39 -3.36 16 27 N -0.46 -5.13 7.47 30.44 0.23 -4.90 16 28 H 0.45 3.47 8.96 -182.37 -1.63 1.83 16 29 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 32 H 0.03 0.75 7.13 -51.92 -0.37 0.38 16 33 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 34 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.13 1.65 7.40 -51.91 -0.38 1.27 16 36 H 0.12 1.48 8.11 -51.91 -0.42 1.06 16 37 H 0.14 1.29 7.13 -52.49 -0.37 0.92 16 38 H 0.14 1.17 7.71 -52.48 -0.40 0.77 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.17 0.66 8.06 -52.48 -0.42 0.23 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -35.12 386.26 -11.90 -47.02 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.98 Total: -0.13 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.22 Total: -0.57 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.75 Total: -53.98 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -4.68 Total: -2.49 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.12 -11.90 -47.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012923359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.816 kcal (2) G-P(sol) polarization free energy of solvation -35.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds