Wall clock time and date at job start Tue Mar 31 2020 06:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46498 * 120.00457 * 2 1 4 4 C 1.50706 * 109.47073 * 270.00492 * 3 2 1 5 5 H 1.07999 * 119.99783 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99833 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99812 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 120.00371 * 359.97438 * 6 4 3 9 9 H 1.48494 * 109.47011 * 89.99769 * 8 6 4 10 10 H 1.48499 * 109.46914 * 210.00165 * 8 6 4 11 11 H 1.48498 * 109.46734 * 330.00017 * 8 6 4 12 12 C 1.34778 * 119.99851 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00060 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00210 * 359.97438 * 12 2 1 15 15 S 1.80994 * 109.47351 * 180.02562 * 14 12 2 16 16 C 1.76201 * 100.00144 * 180.02562 * 15 14 12 17 17 N 1.31455 * 125.92877 * 359.68233 * 16 15 14 18 18 C 1.34382 * 109.62744 * 180.27219 * 17 16 15 19 19 C 1.47250 * 125.61084 * 179.97438 * 18 17 16 20 20 C 1.34689 * 120.00056 * 180.02562 * 19 18 17 21 21 C 1.46559 * 120.00238 * 179.97438 * 20 19 18 22 22 C 1.36394 * 125.34563 * 179.71417 * 21 20 19 23 23 C 1.37736 * 114.39098 * 179.85852 * 22 21 20 24 24 C 1.33705 * 115.21076 * 0.43134 * 23 22 21 25 25 S 1.75818 * 109.99940 * 359.76570 * 24 23 22 26 26 N 1.31765 * 108.77832 * 359.97438 * 18 17 16 27 27 N 1.35215 * 125.93481 * 180.02562 * 16 15 14 28 28 H 0.96998 * 126.71148 * 359.76204 * 27 16 15 29 29 H 1.09008 * 109.47098 * 270.00422 * 1 2 3 30 30 H 1.09002 * 109.47142 * 29.99636 * 1 2 3 31 31 H 1.09000 * 109.47864 * 149.99889 * 1 2 3 32 32 H 1.09007 * 109.46848 * 29.99870 * 3 2 1 33 33 H 1.08999 * 109.47545 * 150.00209 * 3 2 1 34 34 H 0.97000 * 119.99878 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.47198 * 59.99421 * 14 12 2 36 36 H 1.09003 * 109.46759 * 300.00470 * 14 12 2 37 37 H 1.07997 * 119.99892 * 0.04131 * 19 18 17 38 38 H 1.08006 * 120.00293 * 359.97438 * 20 19 18 39 39 H 1.08002 * 122.80599 * 359.97438 * 22 21 20 40 40 H 1.08001 * 122.39422 * 180.17610 * 23 22 21 41 41 H 1.08003 * 125.00036 * 179.76423 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.3456 3.2573 -2.9127 8 14 3.7319 3.9298 -0.2530 9 1 5.1052 3.5090 0.1240 10 1 3.7468 5.3564 -0.6651 11 1 2.8253 3.7602 0.9108 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 16 2.5614 -3.8481 -0.0005 16 6 1.4413 -5.2082 -0.0013 17 7 0.1293 -5.1270 0.0042 18 6 -0.3994 -6.3624 0.0076 19 6 -1.8373 -6.6797 0.0145 20 6 -2.2437 -7.9638 0.0179 21 6 -3.6748 -8.2796 0.0253 22 6 -4.2056 -9.5360 0.0237 23 6 -5.5825 -9.5718 0.0350 24 6 -6.1832 -8.3773 0.0366 25 16 -4.9774 -7.0978 0.0301 26 7 0.5806 -7.2432 0.0037 27 7 1.7820 -6.5168 -0.0011 28 1 2.6806 -6.8820 -0.0037 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3635 -0.8899 -0.5138 32 1 1.6084 2.0284 0.5139 33 1 3.1500 1.1383 0.5138 34 1 3.8225 4.0832 -3.0899 35 1 0.7582 -2.5298 -0.8903 36 1 0.7589 -2.5302 0.8897 37 1 -2.5661 -5.8827 0.0166 38 1 -1.5149 -8.7609 0.0151 39 1 -3.5972 -10.4283 0.0162 40 1 -6.1372 -10.4985 0.0380 41 1 -7.2519 -8.2214 0.0412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012923359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:11 Heat of formation + Delta-G solvation = 88.009641 kcal Electronic energy + Delta-G solvation = -25300.825726 eV Core-core repulsion = 21435.526780 eV Total energy + Delta-G solvation = -3865.298946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.00054 -40.73534 -38.69747 -36.74409 -35.82493 -34.73744 -33.59403 -32.30867 -31.81417 -29.61771 -29.37763 -27.35517 -25.75176 -24.71599 -24.19117 -23.14076 -21.08756 -20.59158 -20.06241 -19.59273 -19.14761 -18.20761 -18.05546 -17.39853 -17.00231 -16.92731 -16.66522 -16.62086 -15.97357 -15.56392 -15.20399 -14.78352 -14.49581 -14.28858 -14.18432 -14.13198 -13.66850 -13.60977 -13.48501 -13.45193 -13.25758 -13.17189 -12.82542 -12.80311 -12.43960 -12.34733 -12.03544 -11.86638 -11.73638 -11.65592 -11.50857 -11.39215 -10.93857 -10.85591 -10.81607 -9.49295 -9.45419 -9.12310 -8.84542 -8.32613 -6.38358 -0.66908 -0.28442 0.26150 0.64887 0.72709 0.92258 1.06480 1.35397 1.39202 1.47341 1.57534 1.72802 1.81767 2.23699 2.26064 2.32526 3.01868 3.05937 3.37211 3.49611 3.95570 4.03907 4.13395 4.22897 4.25177 4.43428 4.46860 4.67082 4.67629 4.80331 4.87734 4.93896 4.98707 4.99074 5.09993 5.23193 5.25649 5.42610 5.44828 5.52763 5.57342 5.81175 6.21648 6.51880 6.63737 6.70575 7.12841 7.28414 8.84123 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.001712 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.404462 B =16352.105263 C =17754.154756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.595 5.595 3 C 0.223 3.777 4 C -0.539 4.539 5 H 0.030 0.970 6 C 0.011 3.989 7 N -0.945 5.945 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.235 1.235 12 C 0.516 3.484 13 O -0.577 6.577 14 C -0.126 4.126 15 S 0.085 5.915 16 C 0.252 3.748 17 N -0.548 5.548 18 C 0.259 3.741 19 C -0.093 4.093 20 C -0.014 4.014 21 C -0.192 4.192 22 C -0.111 4.111 23 C -0.146 4.146 24 C -0.207 4.207 25 S 0.113 5.887 26 N -0.314 5.314 27 N -0.454 5.454 28 H 0.459 0.541 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.268 0.732 35 H 0.136 0.864 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.574 -26.495 10.194 33.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.326 5.326 3 C 0.101 3.899 4 C -0.577 4.577 5 H 0.048 0.952 6 C -0.187 4.187 7 N -0.585 5.585 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.158 1.158 12 C 0.303 3.697 13 O -0.458 6.458 14 C -0.277 4.277 15 S 0.312 5.688 16 C -0.134 4.134 17 N -0.281 5.281 18 C -0.021 4.021 19 C -0.115 4.115 20 C -0.039 4.039 21 C -0.309 4.309 22 C -0.143 4.143 23 C -0.176 4.176 24 C -0.343 4.343 25 S 0.378 5.622 26 N -0.145 5.145 27 N -0.176 5.176 28 H 0.308 0.692 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.178 0.822 40 H 0.183 0.817 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.126 -25.153 10.095 32.060 hybrid contribution 0.055 -0.780 -0.215 0.811 sum -17.070 -25.933 9.880 32.581 Atomic orbital electron populations 1.22084 0.77134 1.04336 1.03471 1.47815 1.08674 1.05506 1.70616 1.19435 0.92992 0.81994 0.95489 1.21557 1.36936 1.06812 0.92412 0.95165 1.25853 0.95295 0.98965 0.98594 1.70052 1.42610 1.24468 1.21341 0.85720 0.79645 0.77692 0.79932 1.20173 1.20245 1.15791 1.20085 0.87384 0.85449 0.76818 1.90696 1.15468 1.87432 1.52162 1.23715 1.01337 0.91703 1.10949 1.86657 1.01202 0.89544 1.91445 1.26792 0.95613 0.91701 0.99287 1.71174 1.04451 1.25056 1.27433 1.22786 0.95475 0.86178 0.97683 1.20821 0.87458 0.97386 1.05858 1.21404 0.91849 0.96372 0.94229 1.23433 0.96185 0.97310 1.13961 1.21106 0.95624 0.96941 1.00615 1.20369 0.93974 0.99554 1.03661 1.26224 1.04236 0.95357 1.08521 1.84449 0.96340 1.10185 1.71201 1.78145 0.90026 1.18370 1.27971 1.47736 1.09667 1.02711 1.57500 0.69185 0.89636 0.91021 0.89322 0.92581 0.95734 0.92291 0.84558 0.83258 0.84047 0.83805 0.82185 0.81665 0.79482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.90 10.24 127.77 1.31 3.21 16 2 N -0.60 -22.78 2.86 -851.12 -2.43 -25.21 16 3 C 0.22 10.40 4.23 85.64 0.36 10.77 16 4 C -0.54 -30.96 9.94 25.60 0.25 -30.71 16 5 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 6 C 0.01 0.64 5.47 84.65 0.46 1.10 16 7 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 8 Si 0.95 43.43 27.47 68.60 1.88 45.32 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.23 -9.52 6.54 99.48 0.65 -8.87 16 12 C 0.52 19.60 7.69 87.66 0.67 20.27 16 13 O -0.58 -27.08 15.44 -3.04 -0.05 -27.12 16 14 C -0.13 -3.39 4.24 71.24 0.30 -3.08 16 15 S 0.09 2.24 21.45 -56.49 -1.21 1.03 16 16 C 0.25 6.18 8.30 179.93 1.49 7.67 16 17 N -0.55 -14.35 10.60 -190.15 -2.02 -16.37 16 18 C 0.26 6.38 7.88 136.92 1.08 7.46 16 19 C -0.09 -1.85 9.77 23.83 0.23 -1.62 16 20 C -0.01 -0.23 9.69 23.63 0.23 -0.01 16 21 C -0.19 -2.87 6.37 24.01 0.15 -2.72 16 22 C -0.11 -1.30 10.18 21.72 0.22 -1.08 16 23 C -0.15 -1.39 10.15 21.12 0.21 -1.18 16 24 C -0.21 -2.07 11.21 66.79 0.75 -1.32 16 25 S 0.11 1.54 22.13 -56.49 -1.25 0.29 16 26 N -0.31 -7.49 12.31 -52.87 -0.65 -8.14 16 27 N -0.45 -9.67 7.47 -57.60 -0.43 -10.10 16 28 H 0.46 6.75 8.96 -213.13 -1.91 4.84 16 29 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 31 H 0.09 1.91 6.44 -2.39 -0.02 1.89 16 32 H 0.06 2.37 7.13 -2.38 -0.02 2.35 16 33 H 0.02 1.22 6.85 -2.39 -0.02 1.20 16 34 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.14 3.40 7.40 -2.39 -0.02 3.38 16 36 H 0.15 3.24 8.11 -2.39 -0.02 3.22 16 37 H 0.14 2.63 7.13 -2.91 -0.02 2.61 16 38 H 0.14 2.24 7.71 -2.91 -0.02 2.22 16 39 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 41 H 0.19 0.93 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -78.81 386.26 1.00 -77.81 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -0.88 Total: 12.55 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 7.73 Total: 8.77 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -5.23 Total: -118.64 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.05 Total: -27.12 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.32 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -2.46 Total: 1.32 kcal Total: -78.81 1.00 -77.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012923359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.816 kcal (2) G-P(sol) polarization free energy of solvation -78.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds