Wall clock time and date at job start Tue Mar 31 2020 06:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34684 * 117.00620 * 2 1 4 4 O 1.21440 * 119.99844 * 359.97438 * 3 2 1 5 5 C 1.47953 * 120.00135 * 179.97438 * 3 2 1 6 6 C 1.40092 * 119.75654 * 359.97438 * 5 3 2 7 7 C 1.36567 * 120.59961 * 179.97438 * 6 5 3 8 8 C 1.39408 * 119.88901 * 359.97438 * 7 6 5 9 9 C 1.41363 * 120.25313 * 0.02562 * 8 7 6 10 10 C 1.38915 * 119.75170 * 179.97438 * 5 3 2 11 11 N 1.34784 * 119.21221 * 179.73929 * 9 8 7 12 12 C 1.30950 * 121.68734 * 0.51854 * 11 9 8 13 13 S 1.76199 * 118.46874 * 179.71894 * 12 11 9 14 14 C 1.76205 * 99.99765 * 359.73263 * 13 12 11 15 15 H 1.07998 * 120.00040 * 0.02562 * 14 13 12 16 16 C 1.38809 * 119.99781 * 179.97438 * 14 13 12 17 17 N 1.31525 * 119.99847 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00091 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47215 * 89.99759 * 18 16 14 20 20 H 1.48500 * 109.47317 * 210.00242 * 18 16 14 21 21 H 1.48506 * 109.46953 * 330.00147 * 18 16 14 22 22 N 1.36664 * 123.06370 * 359.43980 * 12 11 9 23 23 C 1.46498 * 119.78059 * 180.27687 * 22 12 11 24 24 C 1.53001 * 109.47012 * 90.00168 * 23 22 12 25 25 H 1.08999 * 109.47178 * 59.99873 * 24 23 22 26 26 C 1.53006 * 109.46972 * 180.02562 * 24 23 22 27 27 O 1.42902 * 109.46943 * 299.99798 * 24 23 22 28 28 C 1.35321 * 120.43396 * 0.29853 * 22 12 11 29 29 O 1.21709 * 121.24499 * 179.97438 * 28 22 12 30 30 H 1.09004 * 109.47017 * 300.00877 * 1 2 3 31 31 H 1.09007 * 109.46819 * 60.00029 * 1 2 3 32 32 H 1.08997 * 109.47941 * 180.02562 * 1 2 3 33 33 H 1.08007 * 119.70804 * 359.97438 * 6 5 3 34 34 H 1.07998 * 120.05719 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.28525 * 0.02562 * 10 5 3 36 36 H 0.97000 * 119.99538 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.46798 * 210.00199 * 23 22 12 38 38 H 1.08999 * 109.47252 * 330.00087 * 23 22 12 39 39 H 1.09004 * 109.47198 * 59.99437 * 26 24 23 40 40 H 1.08994 * 109.47192 * 179.97438 * 26 24 23 41 41 H 1.09003 * 109.46800 * 300.00007 * 26 24 23 42 42 H 0.96706 * 113.99659 * 299.99859 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4022 2.2185 -0.0005 5 6 3.5410 1.2773 0.0006 6 6 4.2989 0.0991 0.0017 7 6 5.6637 0.1504 0.0017 8 6 6.3125 1.3842 0.0001 9 6 5.5632 2.5829 -0.0010 10 6 4.1664 2.5177 0.0000 11 7 6.2120 3.7643 0.0028 12 6 7.5198 3.8308 -0.0026 13 16 8.2800 5.4204 -0.0046 14 6 6.8465 6.4450 -0.0060 15 1 5.8633 5.9981 -0.0051 16 6 6.9809 7.8266 -0.0072 17 7 8.1783 8.3708 -0.0078 18 14 5.4613 8.9128 -0.0079 19 1 5.0587 9.2019 1.3919 20 1 5.7635 10.1865 -0.7092 21 1 4.3534 8.2136 -0.7072 22 7 8.3226 2.7248 -0.0012 23 6 9.7791 2.8829 -0.0014 24 6 10.2861 2.9398 1.4410 25 1 10.0209 2.0164 1.9560 26 6 11.8071 3.1055 1.4408 27 8 9.6866 4.0492 2.1132 28 6 7.7811 1.4847 0.0000 29 8 8.4820 0.4898 0.0008 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 3.7996 -0.8586 0.0025 34 1 6.2393 -0.7634 0.0029 35 1 3.5789 3.4239 -0.0004 36 1 8.2722 9.3362 -0.0091 37 1 10.2363 2.0367 -0.5142 38 1 10.0443 3.8063 -0.5164 39 1 12.0719 4.0290 0.9258 40 1 12.1683 3.1465 2.4684 41 1 12.2647 2.2595 0.9279 42 1 9.8807 4.9058 1.7086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012974741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:46 Heat of formation + Delta-G solvation = -122.189521 kcal Electronic energy + Delta-G solvation = -30252.642067 eV Core-core repulsion = 25903.182579 eV Total energy + Delta-G solvation = -4349.459487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.097 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.19913 -40.41423 -38.42828 -37.39551 -36.71209 -36.37834 -33.86527 -32.91570 -31.49344 -31.04454 -29.81777 -28.06051 -26.91113 -25.91419 -24.66166 -24.33787 -22.09949 -21.59924 -21.21715 -19.34475 -18.64168 -17.99456 -17.40481 -16.92522 -16.48490 -16.42751 -16.31619 -15.59533 -15.48954 -15.15655 -14.83626 -14.68979 -14.47703 -13.96148 -13.89945 -13.70067 -13.50900 -13.21867 -12.91111 -12.63092 -12.53950 -12.34411 -12.27013 -11.97973 -11.75232 -11.61403 -11.48035 -11.32363 -11.24603 -10.94077 -10.91247 -10.60951 -10.44518 -10.32972 -9.86673 -9.68629 -9.41143 -9.22471 -9.13492 -9.05078 -8.10029 -7.04130 -6.73219 -4.47563 0.42994 0.99161 2.14969 2.23586 2.56161 2.57139 2.91123 3.08428 3.13116 3.19705 3.20824 3.79565 4.25705 4.45196 4.51576 4.61444 4.67687 4.76764 4.82681 4.91763 4.95052 4.98216 5.03310 5.12701 5.14974 5.25865 5.33256 5.37860 5.48592 5.60881 5.64364 5.71359 5.98811 6.04586 6.07232 6.15980 6.30466 6.33021 6.38054 6.52413 6.82672 6.98104 7.36598 7.68557 7.93142 7.99118 8.23370 8.42974 8.82040 10.33873 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.007810 B = 0.004031 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.424741 B = 6943.651574 C =10225.720608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.510 3.490 4 O -0.500 6.500 5 C -0.078 4.078 6 C -0.129 4.129 7 C -0.038 4.038 8 C -0.208 4.208 9 C 0.197 3.803 10 C -0.061 4.061 11 N -0.537 5.537 12 C 0.341 3.659 13 S 0.180 5.820 14 C -0.538 4.538 15 H 0.119 0.881 16 C 0.079 3.921 17 N -0.870 5.870 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.263 1.263 22 N -0.525 5.525 23 C 0.058 3.942 24 C 0.088 3.912 25 H 0.100 0.900 26 C -0.181 4.181 27 O -0.554 6.554 28 C 0.556 3.444 29 O -0.530 6.530 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.149 0.851 36 H 0.279 0.721 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.634 -12.099 -0.302 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.354 3.646 4 O -0.388 6.388 5 C -0.080 4.080 6 C -0.150 4.150 7 C -0.057 4.057 8 C -0.218 4.218 9 C 0.076 3.924 10 C -0.083 4.083 11 N -0.265 5.265 12 C -0.023 4.023 13 S 0.425 5.575 14 C -0.686 4.686 15 H 0.137 0.863 16 C -0.131 4.131 17 N -0.504 5.504 18 Si 0.759 3.241 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.187 1.187 22 N -0.248 5.248 23 C -0.065 4.065 24 C 0.028 3.972 25 H 0.118 0.882 26 C -0.239 4.239 27 O -0.363 6.363 28 C 0.348 3.652 29 O -0.407 6.407 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.167 0.833 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.791 -11.526 0.070 11.553 hybrid contribution -1.669 0.062 -0.387 1.714 sum -2.460 -11.464 -0.317 11.729 Atomic orbital electron populations 1.23276 0.76143 1.03634 1.02697 1.86542 1.23390 1.32680 1.84417 1.21322 0.89176 0.81370 0.72709 1.90845 1.66724 1.35994 1.45222 1.18978 0.88577 0.94701 1.05784 1.20796 0.93323 0.97481 1.03396 1.20548 0.93890 0.96512 0.94765 1.20689 0.92356 0.95648 1.13102 1.18684 0.93395 0.88089 0.92282 1.20909 0.92172 0.97087 0.98095 1.69059 1.04321 1.23461 1.29705 1.26132 0.89779 0.95040 0.91398 1.83025 1.11784 0.84948 1.77758 1.23691 0.94897 0.92016 1.58002 0.86281 1.25185 0.98090 0.97145 0.92719 1.69871 1.22284 1.13123 1.45083 0.85882 0.80852 0.78394 0.79017 1.19662 1.20557 1.18718 1.46271 1.08330 1.06103 1.64137 1.22793 0.78581 1.05256 0.99912 1.22206 0.92239 0.91681 0.91091 0.88224 1.22435 0.95409 1.02842 1.03256 1.86700 1.75552 1.17254 1.56842 1.18369 0.88406 0.82250 0.76142 1.90777 1.63735 1.35313 1.50910 0.91809 0.91810 0.88035 0.84480 0.84601 0.83304 0.91156 0.87639 0.88004 0.91601 0.91210 0.91431 0.76627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.38 16 2 O -0.35 -4.32 9.78 -40.45 -0.40 -4.71 16 3 C 0.51 7.64 7.90 34.71 0.27 7.92 16 4 O -0.50 -8.67 16.10 -19.22 -0.31 -8.98 16 5 C -0.08 -1.21 5.87 -104.97 -0.62 -1.83 16 6 C -0.13 -1.78 9.54 -39.49 -0.38 -2.16 16 7 C -0.04 -0.58 9.60 -39.75 -0.38 -0.96 16 8 C -0.21 -3.82 5.90 -104.63 -0.62 -4.43 16 9 C 0.20 3.88 6.61 -84.79 -0.56 3.32 16 10 C -0.06 -1.10 9.57 -38.74 -0.37 -1.47 16 11 N -0.54 -11.75 8.27 -10.90 -0.09 -11.84 16 12 C 0.34 7.06 7.35 -88.50 -0.65 6.41 16 13 S 0.18 3.82 16.48 -107.50 -1.77 2.04 16 14 C -0.54 -13.38 9.23 30.94 0.29 -13.10 16 15 H 0.12 3.07 6.48 -52.49 -0.34 2.73 16 16 C 0.08 1.94 5.49 -17.47 -0.10 1.85 16 17 N -0.87 -21.69 13.22 55.49 0.73 -20.96 16 18 Si 0.93 19.69 29.55 -169.99 -5.02 14.67 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 22 N -0.52 -9.64 2.58 -117.31 -0.30 -9.94 16 23 C 0.06 0.86 4.75 -4.04 -0.02 0.84 16 24 C 0.09 1.25 3.86 -26.73 -0.10 1.14 16 25 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 26 C -0.18 -1.92 9.53 37.16 0.35 -1.56 16 27 O -0.55 -9.33 11.91 -35.23 -0.42 -9.75 16 28 C 0.56 10.53 7.66 -12.37 -0.09 10.44 16 29 O -0.53 -10.22 16.29 5.18 0.08 -10.14 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.14 1.51 7.57 -52.48 -0.40 1.12 16 34 H 0.14 1.85 7.80 -52.49 -0.41 1.44 16 35 H 0.15 2.75 7.62 -52.49 -0.40 2.35 16 36 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 37 H 0.11 1.42 7.46 -51.93 -0.39 1.03 16 38 H 0.10 1.41 6.48 -51.93 -0.34 1.08 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.38 6.12 6.83 45.59 0.31 6.43 16 LS Contribution 374.48 15.07 5.64 5.64 Total: -1.00 -29.68 374.48 -7.81 -37.49 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.05 Total: 8.70 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -1.91 Total: 7.78 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.34 Total: -42.74 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -1.04 Total: -33.58 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.77 Total: 2.04 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.68 -7.81 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012974741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.700 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds