Wall clock time and date at job start Tue Mar 31 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34684 * 117.00620 * 2 1 4 4 O 1.21440 * 119.99844 * 359.97438 * 3 2 1 5 5 C 1.47953 * 120.00135 * 179.97438 * 3 2 1 6 6 C 1.40092 * 119.75654 * 359.97438 * 5 3 2 7 7 C 1.36567 * 120.59961 * 179.97438 * 6 5 3 8 8 C 1.39408 * 119.88901 * 359.97438 * 7 6 5 9 9 C 1.41363 * 120.25313 * 0.02562 * 8 7 6 10 10 C 1.38915 * 119.75170 * 179.97438 * 5 3 2 11 11 N 1.34784 * 119.21221 * 179.73929 * 9 8 7 12 12 C 1.30950 * 121.68734 * 0.51854 * 11 9 8 13 13 S 1.76199 * 118.46874 * 179.71894 * 12 11 9 14 14 C 1.76205 * 99.99765 * 359.73263 * 13 12 11 15 15 H 1.07998 * 120.00040 * 0.02562 * 14 13 12 16 16 C 1.38809 * 119.99781 * 179.97438 * 14 13 12 17 17 N 1.31525 * 119.99847 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00091 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47215 * 89.99759 * 18 16 14 20 20 H 1.48500 * 109.47317 * 210.00242 * 18 16 14 21 21 H 1.48506 * 109.46953 * 330.00147 * 18 16 14 22 22 N 1.36664 * 123.06370 * 359.43980 * 12 11 9 23 23 C 1.46498 * 119.78059 * 180.27687 * 22 12 11 24 24 C 1.53001 * 109.47012 * 90.00168 * 23 22 12 25 25 H 1.08999 * 109.47178 * 59.99873 * 24 23 22 26 26 C 1.53006 * 109.46972 * 180.02562 * 24 23 22 27 27 O 1.42902 * 109.46943 * 299.99798 * 24 23 22 28 28 C 1.35321 * 120.43396 * 0.29853 * 22 12 11 29 29 O 1.21709 * 121.24499 * 179.97438 * 28 22 12 30 30 H 1.09004 * 109.47017 * 300.00877 * 1 2 3 31 31 H 1.09007 * 109.46819 * 60.00029 * 1 2 3 32 32 H 1.08997 * 109.47941 * 180.02562 * 1 2 3 33 33 H 1.08007 * 119.70804 * 359.97438 * 6 5 3 34 34 H 1.07998 * 120.05719 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.28525 * 0.02562 * 10 5 3 36 36 H 0.97000 * 119.99538 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.46798 * 210.00199 * 23 22 12 38 38 H 1.08999 * 109.47252 * 330.00087 * 23 22 12 39 39 H 1.09004 * 109.47198 * 59.99437 * 26 24 23 40 40 H 1.08994 * 109.47192 * 179.97438 * 26 24 23 41 41 H 1.09003 * 109.46800 * 300.00007 * 26 24 23 42 42 H 0.96706 * 113.99659 * 299.99859 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4022 2.2185 -0.0005 5 6 3.5410 1.2773 0.0006 6 6 4.2989 0.0991 0.0017 7 6 5.6637 0.1504 0.0017 8 6 6.3125 1.3842 0.0001 9 6 5.5632 2.5829 -0.0010 10 6 4.1664 2.5177 0.0000 11 7 6.2120 3.7643 0.0028 12 6 7.5198 3.8308 -0.0026 13 16 8.2800 5.4204 -0.0046 14 6 6.8465 6.4450 -0.0060 15 1 5.8633 5.9981 -0.0051 16 6 6.9809 7.8266 -0.0072 17 7 8.1783 8.3708 -0.0078 18 14 5.4613 8.9128 -0.0079 19 1 5.0587 9.2019 1.3919 20 1 5.7635 10.1865 -0.7092 21 1 4.3534 8.2136 -0.7072 22 7 8.3226 2.7248 -0.0012 23 6 9.7791 2.8829 -0.0014 24 6 10.2861 2.9398 1.4410 25 1 10.0209 2.0164 1.9560 26 6 11.8071 3.1055 1.4408 27 8 9.6866 4.0492 2.1132 28 6 7.7811 1.4847 0.0000 29 8 8.4820 0.4898 0.0008 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 3.7996 -0.8586 0.0025 34 1 6.2393 -0.7634 0.0029 35 1 3.5789 3.4239 -0.0004 36 1 8.2722 9.3362 -0.0091 37 1 10.2363 2.0367 -0.5142 38 1 10.0443 3.8063 -0.5164 39 1 12.0719 4.0290 0.9258 40 1 12.1683 3.1465 2.4684 41 1 12.2647 2.2595 0.9279 42 1 9.8807 4.9058 1.7086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012974741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:45 Heat of formation + Delta-G solvation = -140.224310 kcal Electronic energy + Delta-G solvation = -30253.424114 eV Core-core repulsion = 25903.182579 eV Total energy + Delta-G solvation = -4350.241535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.097 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.63480 -41.59421 -39.73349 -38.78552 -38.02966 -37.55228 -35.29472 -34.73628 -32.82222 -32.21257 -31.21657 -29.02227 -28.01428 -27.72972 -26.06359 -25.61332 -23.37470 -22.88025 -22.43100 -20.78894 -20.05307 -19.51629 -18.70303 -18.24773 -17.82851 -17.68102 -17.45892 -16.98281 -16.93154 -16.66161 -16.28818 -16.07536 -15.82357 -15.13731 -15.07214 -14.95460 -14.86489 -14.64931 -14.31574 -13.90686 -13.60476 -13.49993 -13.32951 -13.22908 -13.11829 -13.00849 -12.97743 -12.75906 -12.72399 -12.13847 -12.11070 -11.85499 -11.84240 -11.60997 -11.36785 -11.31723 -10.95112 -10.78936 -10.70937 -10.41244 -9.60878 -8.64399 -8.55853 -6.32949 -0.92494 -0.43780 0.57708 0.92905 1.10458 1.39403 1.40574 1.48192 1.51510 1.53046 1.86233 2.10047 2.82459 2.89008 2.92732 3.06688 3.35112 3.48230 3.55847 3.64153 3.69277 3.88544 4.00624 4.08991 4.14391 4.30278 4.34828 4.35526 4.36391 4.46597 4.69857 4.72527 4.80981 4.87760 5.00282 5.05125 5.07844 5.12170 5.17802 5.28142 5.44144 5.51424 5.60319 6.30800 6.50766 6.54369 6.71669 6.88979 6.97147 8.51966 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.007810 B = 0.004031 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.424741 B = 6943.651574 C =10225.720608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.345 6.345 3 C 0.516 3.484 4 O -0.529 6.529 5 C -0.074 4.074 6 C -0.096 4.096 7 C -0.035 4.035 8 C -0.215 4.215 9 C 0.165 3.835 10 C -0.076 4.076 11 N -0.566 5.566 12 C 0.341 3.659 13 S 0.185 5.815 14 C -0.568 4.568 15 H 0.100 0.900 16 C 0.044 3.956 17 N -0.893 5.893 18 Si 0.983 3.017 19 H -0.269 1.269 20 H -0.267 1.267 21 H -0.272 1.272 22 N -0.523 5.523 23 C 0.052 3.948 24 C 0.088 3.912 25 H 0.089 0.911 26 C -0.172 4.172 27 O -0.575 6.575 28 C 0.549 3.451 29 O -0.534 6.534 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.141 0.859 33 H 0.179 0.821 34 H 0.162 0.838 35 H 0.132 0.868 36 H 0.282 0.718 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 -14.921 -0.430 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.261 6.261 3 C 0.361 3.639 4 O -0.420 6.420 5 C -0.077 4.077 6 C -0.116 4.116 7 C -0.054 4.054 8 C -0.225 4.225 9 C 0.047 3.953 10 C -0.097 4.097 11 N -0.295 5.295 12 C -0.026 4.026 13 S 0.427 5.573 14 C -0.716 4.716 15 H 0.118 0.882 16 C -0.164 4.164 17 N -0.527 5.527 18 Si 0.806 3.194 19 H -0.195 1.195 20 H -0.192 1.192 21 H -0.197 1.197 22 N -0.247 5.247 23 C -0.070 4.070 24 C 0.028 3.972 25 H 0.107 0.893 26 C -0.230 4.230 27 O -0.386 6.386 28 C 0.342 3.658 29 O -0.412 6.412 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.159 0.841 33 H 0.197 0.803 34 H 0.179 0.821 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.301 -14.422 -0.058 14.480 hybrid contribution -1.696 0.591 -0.343 1.829 sum -2.998 -13.831 -0.401 14.158 Atomic orbital electron populations 1.23674 0.73854 1.06277 1.02733 1.86520 1.25475 1.30570 1.83546 1.21158 0.88776 0.81861 0.72104 1.90843 1.67232 1.37265 1.46628 1.19128 0.89508 0.94392 1.04648 1.21228 0.92666 0.98302 0.99441 1.20876 0.94599 0.96077 0.93820 1.20933 0.92318 0.96415 1.12795 1.18840 0.94059 0.88089 0.94300 1.20842 0.91615 0.97848 0.99407 1.68973 1.05269 1.25350 1.29870 1.26049 0.89888 0.95437 0.91231 1.82664 1.10099 0.84572 1.79960 1.23779 0.95685 0.93216 1.58929 0.88244 1.25789 1.00209 0.97928 0.92477 1.69901 1.23279 1.13476 1.46076 0.85156 0.77995 0.77330 0.78915 1.19455 1.19200 1.19710 1.46372 1.09551 1.05387 1.63374 1.23096 0.76681 1.06352 1.00850 1.22304 0.94494 0.90384 0.90053 0.89312 1.22366 0.92379 1.04216 1.04054 1.86668 1.76458 1.17931 1.57519 1.18534 0.88780 0.82327 0.76143 1.90763 1.63884 1.35188 1.51402 0.91867 0.91822 0.84057 0.80324 0.82090 0.84962 0.90795 0.85874 0.87283 0.90706 0.90751 0.89392 0.76485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.35 -7.28 9.78 -55.93 -0.55 -7.83 16 3 C 0.52 14.60 7.90 70.40 0.56 15.15 16 4 O -0.53 -18.18 16.10 20.03 0.32 -17.86 16 5 C -0.07 -2.20 5.87 -20.09 -0.12 -2.32 16 6 C -0.10 -2.32 9.54 22.33 0.21 -2.10 16 7 C -0.03 -0.95 9.60 22.16 0.21 -0.74 16 8 C -0.22 -7.74 5.90 -19.87 -0.12 -7.86 16 9 C 0.17 6.67 6.61 39.84 0.26 6.94 16 10 C -0.08 -2.78 9.57 22.82 0.22 -2.56 16 11 N -0.57 -25.87 8.27 -188.40 -1.56 -27.42 16 12 C 0.34 14.59 7.35 179.61 1.32 15.91 16 13 S 0.18 8.11 16.48 -56.49 -0.93 7.17 16 14 C -0.57 -29.54 9.23 67.96 0.63 -28.92 16 15 H 0.10 5.45 6.48 -2.91 -0.02 5.43 16 16 C 0.04 2.22 5.49 84.88 0.47 2.69 16 17 N -0.89 -45.46 13.22 21.64 0.29 -45.17 16 18 Si 0.98 41.41 29.55 68.60 2.03 43.44 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 N -0.52 -19.34 2.58 -642.95 -1.66 -20.99 16 23 C 0.05 1.52 4.75 86.38 0.41 1.93 16 24 C 0.09 2.43 3.86 30.60 0.12 2.55 16 25 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 26 C -0.17 -3.35 9.53 71.98 0.69 -2.66 16 27 O -0.58 -19.71 11.91 -148.98 -1.77 -21.48 16 28 C 0.55 20.46 7.66 86.51 0.66 21.13 16 29 O -0.53 -19.74 16.29 -4.38 -0.07 -19.81 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.18 2.91 7.57 -2.91 -0.02 2.88 16 34 H 0.16 3.71 7.80 -2.91 -0.02 3.69 16 35 H 0.13 5.22 7.62 -2.91 -0.02 5.20 16 36 H 0.28 13.43 8.31 -92.71 -0.77 12.65 16 37 H 0.12 3.12 7.46 -2.39 -0.02 3.10 16 38 H 0.11 3.01 6.48 -2.39 -0.02 2.99 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.38 12.64 6.83 -74.07 -0.51 12.13 16 Total: -1.00 -66.49 374.48 3.41 -63.09 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.59 Total: 26.17 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 6.72 Total: 20.70 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -2.93 Total: -93.59 kcal Atomic # 8 Polarization: -64.92 SS G_CDS: -2.07 Total: -66.99 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 8.11 SS G_CDS: -0.93 Total: 7.17 kcal Total: -66.49 3.41 -63.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012974741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.136 kcal (2) G-P(sol) polarization free energy of solvation -66.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds