Wall clock time and date at job start Tue Mar 31 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34679 * 117.00438 * 2 1 4 4 O 1.21449 * 119.99642 * 0.02562 * 3 2 1 5 5 C 1.47954 * 120.00545 * 179.97438 * 3 2 1 6 6 C 1.40105 * 119.75575 * 0.02562 * 5 3 2 7 7 C 1.36563 * 120.60094 * 179.97438 * 6 5 3 8 8 C 1.39402 * 119.89268 * 359.95665 * 7 6 5 9 9 C 1.41362 * 120.25097 * 0.04459 * 8 7 6 10 10 C 1.38913 * 119.76124 * 180.02562 * 5 3 2 11 11 N 1.34777 * 119.22441 * 179.97438 * 9 8 7 12 12 C 1.30946 * 121.68614 * 0.02562 * 11 9 8 13 13 S 1.76193 * 118.47070 * 179.97438 * 12 11 9 14 14 C 1.76201 * 100.00270 * 0.02562 * 13 12 11 15 15 H 1.08004 * 119.99530 * 359.97438 * 14 13 12 16 16 C 1.38803 * 120.00572 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00420 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99654 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47447 * 89.99818 * 18 16 14 20 20 H 1.48508 * 109.47059 * 210.00055 * 18 16 14 21 21 H 1.48509 * 109.47325 * 329.99822 * 18 16 14 22 22 N 1.36662 * 123.05917 * 0.02562 * 12 11 9 23 23 C 1.46506 * 119.77694 * 179.97438 * 22 12 11 24 24 C 1.53000 * 109.46992 * 90.00072 * 23 22 12 25 25 H 1.08998 * 109.46963 * 305.00287 * 24 23 22 26 26 C 1.52994 * 109.47338 * 184.99891 * 24 23 22 27 27 O 1.42901 * 109.46999 * 64.99670 * 24 23 22 28 28 C 1.35318 * 120.44388 * 0.25088 * 22 12 11 29 29 O 1.21696 * 121.25480 * 179.74345 * 28 22 12 30 30 H 1.08991 * 109.46916 * 299.99737 * 1 2 3 31 31 H 1.08997 * 109.46581 * 59.99583 * 1 2 3 32 32 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 33 33 H 1.07998 * 119.69808 * 359.97438 * 6 5 3 34 34 H 1.08000 * 120.05343 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.27815 * 0.04814 * 10 5 3 36 36 H 0.96998 * 120.00164 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.46803 * 209.99506 * 23 22 12 38 38 H 1.09000 * 109.47214 * 330.00300 * 23 22 12 39 39 H 1.09001 * 109.47409 * 59.99958 * 26 24 23 40 40 H 1.08999 * 109.47216 * 180.02562 * 26 24 23 41 41 H 1.09006 * 109.47221 * 299.99832 * 26 24 23 42 42 H 0.96705 * 114.00192 * 60.00629 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4021 2.2185 0.0005 5 6 3.5410 1.2774 0.0006 6 6 4.2991 0.0992 0.0006 7 6 5.6638 0.1505 0.0006 8 6 6.3126 1.3844 -0.0003 9 6 5.5632 2.5830 -0.0003 10 6 4.1665 2.5178 0.0011 11 7 6.2117 3.7645 -0.0007 12 6 7.5195 3.8313 -0.0016 13 16 8.2794 5.4209 -0.0027 14 6 6.8458 6.4454 -0.0014 15 1 5.8626 5.9983 -0.0007 16 6 6.9799 7.8269 -0.0012 17 7 5.9098 8.5916 0.0003 18 14 8.6804 8.6002 -0.0032 19 1 9.1293 8.8053 -1.4037 20 1 8.6299 9.9087 0.6973 21 1 9.6338 7.7012 0.6956 22 7 8.3224 2.7254 -0.0027 23 6 9.7789 2.8838 -0.0042 24 6 10.2874 2.9385 1.4378 25 1 9.7649 3.7282 1.9776 26 6 11.7897 3.2283 1.4382 27 8 10.0442 1.6836 2.0766 28 6 7.7813 1.4852 -0.0080 29 8 8.4823 0.4904 -0.0138 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.7997 -0.8584 0.0006 34 1 6.2394 -0.7633 0.0001 35 1 3.5789 3.4239 0.0019 36 1 6.0036 9.5571 0.0000 37 1 10.2357 2.0383 -0.5186 38 1 10.0434 3.8079 -0.5180 39 1 11.9753 4.1855 0.9509 40 1 12.1520 3.2668 2.4655 41 1 12.3122 2.4385 0.8984 42 1 10.4796 0.9335 1.6489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012974743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:50 Heat of formation + Delta-G solvation = -120.257098 kcal Electronic energy + Delta-G solvation = -30179.660065 eV Core-core repulsion = 25830.284373 eV Total energy + Delta-G solvation = -4349.375691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.097 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.26204 -40.40658 -38.50218 -37.36409 -36.86768 -36.38968 -34.03871 -32.85156 -31.52377 -31.13437 -29.89166 -28.05696 -26.97695 -26.03923 -24.73205 -24.42221 -22.09053 -21.78944 -21.24252 -19.41179 -18.61823 -18.05574 -17.45843 -16.97553 -16.49454 -16.41643 -16.36010 -15.67524 -15.56138 -15.37992 -14.94878 -14.72002 -14.48202 -14.05387 -13.89768 -13.71169 -13.48987 -13.19716 -12.96141 -12.72309 -12.62029 -12.36365 -12.26193 -12.18602 -12.03080 -11.87523 -11.54917 -11.41760 -11.39413 -11.02376 -10.88975 -10.59719 -10.48550 -10.40852 -9.94159 -9.63406 -9.49264 -9.32707 -9.17867 -9.06786 -8.35285 -7.24606 -6.63489 -4.45913 0.40024 0.93168 1.87043 2.22691 2.52084 2.58243 2.75979 2.96732 3.00740 3.09901 3.17611 3.85848 4.05768 4.20787 4.31571 4.48540 4.64239 4.67987 4.77154 4.79680 4.93951 4.97709 4.98023 5.06196 5.07424 5.20252 5.27492 5.35081 5.44361 5.50482 5.56757 5.62968 5.92690 5.98553 6.06068 6.07301 6.29071 6.29905 6.36532 6.47287 6.77309 6.92790 7.61253 7.67757 7.70568 7.96520 8.32960 8.55031 8.72726 10.43936 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.008592 B = 0.003777 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.898242 B = 7410.605143 C =10400.529208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.509 3.491 4 O -0.497 6.497 5 C -0.079 4.079 6 C -0.122 4.122 7 C -0.041 4.041 8 C -0.200 4.200 9 C 0.189 3.811 10 C -0.054 4.054 11 N -0.521 5.521 12 C 0.354 3.646 13 S 0.085 5.915 14 C -0.530 4.530 15 H 0.135 0.865 16 C 0.103 3.897 17 N -0.845 5.845 18 Si 0.840 3.160 19 H -0.260 1.260 20 H -0.262 1.262 21 H -0.238 1.238 22 N -0.527 5.527 23 C 0.060 3.940 24 C 0.086 3.914 25 H 0.110 0.890 26 C -0.180 4.180 27 O -0.553 6.553 28 C 0.563 3.437 29 O -0.523 6.523 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.152 0.848 36 H 0.278 0.722 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.248 -13.869 -0.200 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.353 3.647 4 O -0.385 6.385 5 C -0.082 4.082 6 C -0.143 4.143 7 C -0.060 4.060 8 C -0.210 4.210 9 C 0.070 3.930 10 C -0.076 4.076 11 N -0.248 5.248 12 C -0.013 4.013 13 S 0.328 5.672 14 C -0.677 4.677 15 H 0.153 0.847 16 C -0.110 4.110 17 N -0.478 5.478 18 Si 0.663 3.337 19 H -0.185 1.185 20 H -0.186 1.186 21 H -0.163 1.163 22 N -0.251 5.251 23 C -0.064 4.064 24 C 0.026 3.974 25 H 0.128 0.872 26 C -0.239 4.239 27 O -0.359 6.359 28 C 0.356 3.644 29 O -0.400 6.400 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.170 0.830 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.694 -12.471 0.190 13.008 hybrid contribution -0.203 -0.585 -0.454 0.768 sum 3.491 -13.056 -0.264 13.517 Atomic orbital electron populations 1.23278 0.76093 1.03625 1.02750 1.86535 1.23433 1.32657 1.84454 1.21292 0.89132 0.81416 0.72841 1.90863 1.66663 1.35956 1.45000 1.18993 0.88712 0.94637 1.05867 1.20847 0.93343 0.97561 1.02557 1.20551 0.93891 0.96526 0.95045 1.20742 0.92461 0.95625 1.12145 1.18660 0.93468 0.87879 0.93041 1.20971 0.92165 0.97274 0.97146 1.69038 1.04081 1.23622 1.28094 1.25379 0.89678 0.93575 0.92634 1.82924 1.13660 0.89419 1.81241 1.22938 0.93817 0.92463 1.58497 0.84706 1.24776 0.97201 0.95919 0.93105 1.69845 1.28573 1.05609 1.43770 0.87082 0.84352 0.81871 0.80379 1.18469 1.18609 1.16298 1.46301 1.08219 1.06118 1.64449 1.22760 0.78657 1.05216 0.99747 1.22320 0.95588 0.87721 0.91816 0.87235 1.22419 0.95347 1.02795 1.03294 1.86624 1.76364 1.16440 1.56432 1.18225 0.88214 0.82089 0.75884 1.90734 1.63640 1.35153 1.50438 0.91770 0.91785 0.88040 0.84359 0.84474 0.83014 0.91079 0.88090 0.87567 0.90887 0.91169 0.92105 0.77707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.36 9.78 -40.44 -0.40 -4.76 16 3 C 0.51 7.74 7.90 34.71 0.27 8.02 16 4 O -0.50 -8.84 16.10 -19.23 -0.31 -9.15 16 5 C -0.08 -1.25 5.87 -104.97 -0.62 -1.86 16 6 C -0.12 -1.68 9.54 -39.49 -0.38 -2.05 16 7 C -0.04 -0.61 9.60 -39.75 -0.38 -0.99 16 8 C -0.20 -3.61 5.90 -104.63 -0.62 -4.22 16 9 C 0.19 3.72 6.61 -84.79 -0.56 3.16 16 10 C -0.05 -0.99 9.57 -38.74 -0.37 -1.36 16 11 N -0.52 -11.43 8.27 -10.91 -0.09 -11.52 16 12 C 0.35 7.14 7.77 -88.51 -0.69 6.46 16 13 S 0.09 1.73 17.45 -107.50 -1.88 -0.15 16 14 C -0.53 -13.53 9.77 30.94 0.30 -13.23 16 15 H 0.14 3.86 6.71 -52.48 -0.35 3.51 16 16 C 0.10 2.62 5.50 -17.48 -0.10 2.52 16 17 N -0.85 -23.02 13.96 55.49 0.77 -22.24 16 18 Si 0.84 17.58 27.74 -169.99 -4.71 12.86 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.24 -4.59 6.74 56.52 0.38 -4.21 16 22 N -0.53 -9.25 2.61 -117.30 -0.31 -9.55 16 23 C 0.06 0.82 4.58 -4.04 -0.02 0.80 16 24 C 0.09 1.11 3.83 -26.73 -0.10 1.01 16 25 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 26 C -0.18 -1.72 9.53 37.15 0.35 -1.36 16 27 O -0.55 -7.93 12.25 -40.56 -0.50 -8.42 16 28 C 0.56 10.25 7.27 -12.37 -0.09 10.16 16 29 O -0.52 -9.45 15.38 -0.14 0.00 -9.45 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.14 1.50 7.57 -52.49 -0.40 1.11 16 34 H 0.14 1.81 7.80 -52.49 -0.41 1.40 16 35 H 0.15 2.92 7.62 -52.49 -0.40 2.52 16 36 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.10 1.24 7.46 -51.93 -0.39 0.85 16 38 H 0.11 1.35 6.48 -51.93 -0.34 1.01 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.38 4.37 8.79 45.56 0.40 4.77 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -30.86 376.02 -7.67 -38.53 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -4.00 Total: 9.76 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -1.92 Total: 8.43 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.38 Total: -43.31 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.20 Total: -31.78 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -4.71 Total: 12.86 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.88 Total: -0.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.86 -7.67 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012974743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.730 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds