Wall clock time and date at job start Tue Mar 31 2020 06:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34679 * 117.00438 * 2 1 4 4 O 1.21449 * 119.99642 * 0.02562 * 3 2 1 5 5 C 1.47954 * 120.00545 * 179.97438 * 3 2 1 6 6 C 1.40105 * 119.75575 * 0.02562 * 5 3 2 7 7 C 1.36563 * 120.60094 * 179.97438 * 6 5 3 8 8 C 1.39402 * 119.89268 * 359.95665 * 7 6 5 9 9 C 1.41362 * 120.25097 * 0.04459 * 8 7 6 10 10 C 1.38913 * 119.76124 * 180.02562 * 5 3 2 11 11 N 1.34777 * 119.22441 * 179.97438 * 9 8 7 12 12 C 1.30946 * 121.68614 * 0.02562 * 11 9 8 13 13 S 1.76193 * 118.47070 * 179.97438 * 12 11 9 14 14 C 1.76201 * 100.00270 * 0.02562 * 13 12 11 15 15 H 1.08004 * 119.99530 * 359.97438 * 14 13 12 16 16 C 1.38803 * 120.00572 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00420 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99654 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47447 * 89.99818 * 18 16 14 20 20 H 1.48508 * 109.47059 * 210.00055 * 18 16 14 21 21 H 1.48509 * 109.47325 * 329.99822 * 18 16 14 22 22 N 1.36662 * 123.05917 * 0.02562 * 12 11 9 23 23 C 1.46506 * 119.77694 * 179.97438 * 22 12 11 24 24 C 1.53000 * 109.46992 * 90.00072 * 23 22 12 25 25 H 1.08998 * 109.46963 * 305.00287 * 24 23 22 26 26 C 1.52994 * 109.47338 * 184.99891 * 24 23 22 27 27 O 1.42901 * 109.46999 * 64.99670 * 24 23 22 28 28 C 1.35318 * 120.44388 * 0.25088 * 22 12 11 29 29 O 1.21696 * 121.25480 * 179.74345 * 28 22 12 30 30 H 1.08991 * 109.46916 * 299.99737 * 1 2 3 31 31 H 1.08997 * 109.46581 * 59.99583 * 1 2 3 32 32 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 33 33 H 1.07998 * 119.69808 * 359.97438 * 6 5 3 34 34 H 1.08000 * 120.05343 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.27815 * 0.04814 * 10 5 3 36 36 H 0.96998 * 120.00164 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.46803 * 209.99506 * 23 22 12 38 38 H 1.09000 * 109.47214 * 330.00300 * 23 22 12 39 39 H 1.09001 * 109.47409 * 59.99958 * 26 24 23 40 40 H 1.08999 * 109.47216 * 180.02562 * 26 24 23 41 41 H 1.09006 * 109.47221 * 299.99832 * 26 24 23 42 42 H 0.96705 * 114.00192 * 60.00629 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4021 2.2185 0.0005 5 6 3.5410 1.2774 0.0006 6 6 4.2991 0.0992 0.0006 7 6 5.6638 0.1505 0.0006 8 6 6.3126 1.3844 -0.0003 9 6 5.5632 2.5830 -0.0003 10 6 4.1665 2.5178 0.0011 11 7 6.2117 3.7645 -0.0007 12 6 7.5195 3.8313 -0.0016 13 16 8.2794 5.4209 -0.0027 14 6 6.8458 6.4454 -0.0014 15 1 5.8626 5.9983 -0.0007 16 6 6.9799 7.8269 -0.0012 17 7 5.9098 8.5916 0.0003 18 14 8.6804 8.6002 -0.0032 19 1 9.1293 8.8053 -1.4037 20 1 8.6299 9.9087 0.6973 21 1 9.6338 7.7012 0.6956 22 7 8.3224 2.7254 -0.0027 23 6 9.7789 2.8838 -0.0042 24 6 10.2874 2.9385 1.4378 25 1 9.7649 3.7282 1.9776 26 6 11.7897 3.2283 1.4382 27 8 10.0442 1.6836 2.0766 28 6 7.7813 1.4852 -0.0080 29 8 8.4823 0.4904 -0.0138 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.7997 -0.8584 0.0006 34 1 6.2394 -0.7633 0.0001 35 1 3.5789 3.4239 0.0019 36 1 6.0036 9.5571 0.0000 37 1 10.2357 2.0383 -0.5186 38 1 10.0434 3.8079 -0.5180 39 1 11.9753 4.1855 0.9509 40 1 12.1520 3.2668 2.4655 41 1 12.3122 2.4385 0.8984 42 1 10.4796 0.9335 1.6489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012974743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:49 Heat of formation + Delta-G solvation = -140.637381 kcal Electronic energy + Delta-G solvation = -30180.543820 eV Core-core repulsion = 25830.284373 eV Total energy + Delta-G solvation = -4350.259447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.097 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.66621 -41.61254 -39.76835 -38.66589 -38.13114 -37.57454 -35.41174 -34.74654 -32.82920 -32.19867 -31.28811 -29.02627 -28.07130 -27.89499 -26.14903 -25.64829 -23.33823 -22.98627 -22.45136 -20.86468 -20.00638 -19.57288 -18.75588 -18.29109 -17.81200 -17.68222 -17.47497 -17.16156 -16.94757 -16.63116 -16.29430 -16.15747 -15.79070 -15.14254 -15.08693 -14.94681 -14.89909 -14.63016 -14.37418 -13.94058 -13.71306 -13.60083 -13.54231 -13.37056 -13.15996 -13.04525 -13.01879 -12.80509 -12.72182 -12.09586 -12.02701 -11.86887 -11.85472 -11.62847 -11.42426 -11.28777 -11.07436 -10.82171 -10.69928 -10.43529 -9.89302 -8.81027 -8.54032 -6.40020 -0.95561 -0.49890 0.29315 0.93300 1.07426 1.30798 1.33627 1.39148 1.47147 1.52071 1.84360 2.13261 2.28581 2.79198 2.87826 3.02789 3.33324 3.41509 3.52460 3.62429 3.64036 3.89496 3.97818 4.09237 4.11532 4.28295 4.33409 4.34042 4.34449 4.51024 4.68444 4.70369 4.79396 4.88561 4.98889 5.04849 5.06242 5.10665 5.16272 5.29597 5.40863 5.57231 5.71764 6.45106 6.52850 6.53580 6.77182 6.80296 6.83746 8.58379 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.008592 B = 0.003777 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.898242 B = 7410.605143 C =10400.529208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.344 6.344 3 C 0.514 3.486 4 O -0.531 6.531 5 C -0.076 4.076 6 C -0.090 4.090 7 C -0.035 4.035 8 C -0.206 4.206 9 C 0.157 3.843 10 C -0.074 4.074 11 N -0.560 5.560 12 C 0.351 3.649 13 S 0.127 5.873 14 C -0.560 4.560 15 H 0.086 0.914 16 C 0.049 3.951 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.250 1.250 20 H -0.258 1.258 21 H -0.208 1.208 22 N -0.524 5.524 23 C 0.052 3.948 24 C 0.087 3.913 25 H 0.086 0.914 26 C -0.172 4.172 27 O -0.573 6.573 28 C 0.558 3.442 29 O -0.519 6.519 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.143 0.857 33 H 0.182 0.818 34 H 0.167 0.833 35 H 0.126 0.874 36 H 0.281 0.719 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 -17.275 -0.329 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.260 6.260 3 C 0.360 3.640 4 O -0.421 6.421 5 C -0.079 4.079 6 C -0.110 4.110 7 C -0.054 4.054 8 C -0.215 4.215 9 C 0.041 3.959 10 C -0.096 4.096 11 N -0.287 5.287 12 C -0.018 4.018 13 S 0.368 5.632 14 C -0.708 4.708 15 H 0.104 0.896 16 C -0.158 4.158 17 N -0.538 5.538 18 Si 0.721 3.279 19 H -0.174 1.174 20 H -0.182 1.182 21 H -0.131 1.131 22 N -0.248 5.248 23 C -0.070 4.070 24 C 0.026 3.974 25 H 0.104 0.896 26 C -0.230 4.230 27 O -0.380 6.380 28 C 0.351 3.649 29 O -0.396 6.396 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.161 0.839 33 H 0.199 0.801 34 H 0.184 0.816 35 H 0.144 0.856 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.830 -15.981 0.060 17.011 hybrid contribution -1.124 0.083 -0.411 1.200 sum 4.705 -15.898 -0.351 16.584 Atomic orbital electron populations 1.23680 0.73836 1.06334 1.02702 1.86514 1.25483 1.30419 1.83548 1.21182 0.88825 0.81886 0.72121 1.90860 1.67272 1.37379 1.46610 1.19128 0.89540 0.94343 1.04865 1.21290 0.92806 0.98217 0.98647 1.20918 0.94506 0.96201 0.93777 1.21018 0.92798 0.96130 1.11584 1.18787 0.93967 0.88057 0.95127 1.20849 0.91863 0.97794 0.99060 1.68962 1.05495 1.25720 1.28554 1.25401 0.89735 0.94368 0.92251 1.82182 1.09995 0.87943 1.83123 1.22967 0.94721 0.93933 1.59135 0.89581 1.25773 1.01737 0.96201 0.92136 1.69987 1.31616 1.06063 1.46179 0.86126 0.79227 0.81269 0.81242 1.17364 1.18213 1.13096 1.46403 1.09589 1.05188 1.63640 1.23131 0.76330 1.06636 1.00861 1.22317 0.97742 0.86754 0.90545 0.89561 1.22354 0.92440 1.04133 1.04024 1.86592 1.77013 1.17324 1.57076 1.18299 0.88342 0.82311 0.75984 1.90726 1.63575 1.34801 1.50502 0.91927 0.91889 0.83882 0.80070 0.81595 0.85639 0.90883 0.86056 0.86486 0.89787 0.90914 0.90028 0.76426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.34 -7.55 9.78 -55.89 -0.55 -8.10 16 3 C 0.51 15.31 7.90 70.40 0.56 15.87 16 4 O -0.53 -19.41 16.10 20.00 0.32 -19.09 16 5 C -0.08 -2.35 5.87 -20.09 -0.12 -2.47 16 6 C -0.09 -2.17 9.54 22.33 0.21 -1.95 16 7 C -0.03 -0.94 9.60 22.16 0.21 -0.73 16 8 C -0.21 -7.29 5.90 -19.87 -0.12 -7.41 16 9 C 0.16 6.47 6.61 39.84 0.26 6.74 16 10 C -0.07 -2.88 9.57 22.82 0.22 -2.66 16 11 N -0.56 -26.14 8.27 -188.42 -1.56 -27.69 16 12 C 0.35 14.61 7.77 179.61 1.40 16.00 16 13 S 0.13 5.23 17.45 -56.49 -0.99 4.25 16 14 C -0.56 -30.41 9.77 67.96 0.66 -29.74 16 15 H 0.09 5.42 6.71 -2.91 -0.02 5.40 16 16 C 0.05 2.62 5.50 84.87 0.47 3.09 16 17 N -0.90 -52.39 13.96 21.64 0.30 -52.09 16 18 Si 0.90 36.43 27.74 68.60 1.90 38.33 16 19 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.21 -7.29 6.74 99.48 0.67 -6.61 16 22 N -0.52 -18.12 2.61 -642.95 -1.68 -19.80 16 23 C 0.05 1.33 4.58 86.38 0.40 1.72 16 24 C 0.09 2.09 3.83 30.59 0.12 2.21 16 25 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 26 C -0.17 -2.74 9.53 71.98 0.69 -2.05 16 27 O -0.57 -15.39 12.25 -143.88 -1.76 -17.16 16 28 C 0.56 19.62 7.27 86.52 0.63 20.25 16 29 O -0.52 -17.43 15.38 0.76 0.01 -17.41 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.18 2.91 7.57 -2.91 -0.02 2.89 16 34 H 0.17 3.61 7.80 -2.91 -0.02 3.59 16 35 H 0.13 5.42 7.62 -2.91 -0.02 5.40 16 36 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.12 2.61 7.46 -2.39 -0.02 2.60 16 38 H 0.12 2.72 6.48 -2.39 -0.02 2.70 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.39 8.05 8.79 -74.05 -0.65 7.40 16 Total: -1.00 -73.65 376.02 3.20 -70.45 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.41 Total: 27.84 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 6.78 Total: 20.47 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -2.93 Total: -99.58 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -1.98 Total: -61.76 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 1.90 Total: 38.33 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -0.99 Total: 4.25 kcal Total: -73.65 3.20 -70.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012974743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.186 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds