Wall clock time and date at job start Tue Mar 31 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.46947 * 2 1 4 4 N 1.29526 * 126.14595 * 89.96016 * 3 2 1 5 5 N 1.26255 * 116.57932 * 179.75241 * 4 3 2 6 6 C 1.29892 * 117.65815 * 0.53122 * 5 4 3 7 7 N 1.39071 * 125.64970 * 179.76152 * 6 5 4 8 8 C 1.34777 * 120.00252 * 359.70043 * 7 6 5 9 9 O 1.21288 * 119.99593 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.39877 * 126.03804 * 90.02450 * 12 11 10 14 14 C 1.50699 * 125.89849 * 359.95788 * 13 12 11 15 15 N 1.30837 * 108.20185 * 179.97438 * 13 12 11 16 16 N 1.40091 * 108.20322 * 0.02562 * 15 13 12 17 17 C 1.46494 * 126.03223 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.47304 * 90.02275 * 17 16 15 19 19 H 1.07993 * 119.99641 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99974 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00506 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00116 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46970 * 60.00134 * 22 20 18 24 24 H 1.48493 * 109.47164 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46789 * 300.00403 * 22 20 18 26 26 C 1.34943 * 107.92530 * 359.75682 * 16 15 13 27 27 C 1.50699 * 126.12512 * 180.23998 * 26 16 15 28 28 S 1.71311 * 108.69400 * 359.50580 * 6 5 4 29 29 H 1.09002 * 109.47053 * 60.00015 * 1 2 3 30 30 H 1.09002 * 109.47200 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47575 * 300.00321 * 1 2 3 32 32 H 1.08996 * 109.47177 * 240.00042 * 2 1 3 33 33 H 1.09001 * 109.47240 * 119.99465 * 2 1 3 34 34 H 0.97003 * 120.00108 * 179.69856 * 7 6 5 35 35 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 36 36 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 37 37 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 38 38 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 39 39 H 1.08992 * 109.47376 * 89.99804 * 14 13 12 40 40 H 1.09003 * 109.46949 * 210.00143 * 14 13 12 41 41 H 1.09001 * 109.47332 * 329.99951 * 14 13 12 42 42 H 1.09006 * 109.46820 * 210.02240 * 17 16 15 43 43 H 1.08996 * 109.47479 * 330.02113 * 17 16 15 44 44 H 0.96996 * 120.00710 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47581 * 270.17846 * 27 26 16 46 46 H 1.08996 * 109.47395 * 30.17544 * 27 26 16 47 47 H 1.09003 * 109.47313 * 150.17721 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2862 2.1414 1.0459 5 7 2.7059 3.3135 0.8361 6 6 2.8354 3.6956 -0.3986 7 7 3.2769 4.9459 -0.8181 8 6 3.6076 5.8839 0.0915 9 8 3.5197 5.6377 1.2758 10 6 4.0854 7.2389 -0.3631 11 6 4.3924 8.1077 0.8583 12 6 4.8708 9.4625 0.4037 13 6 4.0656 10.5791 0.1560 14 6 2.5662 10.6360 0.2969 15 7 4.8389 11.5654 -0.2194 16 7 6.1625 11.1068 -0.2230 17 6 7.3458 11.8925 -0.5816 18 6 7.8952 12.5641 0.6506 19 1 7.4115 12.4197 1.6053 20 6 9.0159 13.3620 0.5592 21 7 9.6052 13.5375 -0.6034 22 14 9.6973 14.1940 2.0867 23 1 10.0721 13.1622 3.0867 24 1 10.8966 14.9905 1.7231 25 1 8.6643 15.0909 2.6642 26 6 6.1556 9.8152 0.1678 27 6 7.3624 8.9243 0.3126 28 16 2.3791 2.4017 -1.4245 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.3468 5.1428 -1.7653 35 1 3.3098 7.7154 -0.9627 36 1 4.9883 7.1234 -0.9626 37 1 5.1682 7.6310 1.4575 38 1 3.4896 8.2231 1.4581 39 1 2.3079 10.9414 1.3107 40 1 2.1617 11.3566 -0.4139 41 1 2.1447 9.6512 0.0956 42 1 8.1043 11.2342 -1.0053 43 1 7.0705 12.6495 -1.3158 44 1 10.3934 14.0991 -0.6678 45 1 7.5545 8.4162 -0.6324 46 1 8.2290 9.5275 0.5834 47 1 7.1768 8.1847 1.0916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013017170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:24 Heat of formation + Delta-G solvation = 85.274966 kcal Electronic energy + Delta-G solvation = -28791.992681 eV Core-core repulsion = 24717.374036 eV Total energy + Delta-G solvation = -4074.618644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.63231 -40.68460 -39.94205 -35.86489 -34.49020 -34.46057 -33.46154 -32.51438 -30.70232 -29.77915 -28.99693 -27.35961 -26.30346 -25.91514 -24.47389 -23.57468 -22.42240 -21.61541 -20.27682 -19.15923 -18.85940 -18.68895 -17.83573 -16.96005 -16.71262 -16.53005 -15.68016 -15.36435 -15.16377 -14.76675 -14.47622 -14.43468 -14.09892 -13.87059 -13.72969 -13.19928 -13.12843 -12.94978 -12.69714 -12.56868 -12.40403 -12.31086 -12.22952 -11.90805 -11.79362 -11.67247 -11.57435 -11.39760 -11.28901 -10.99740 -10.92682 -10.83674 -10.80463 -10.57812 -10.28050 -9.99987 -9.97198 -9.77657 -9.65815 -9.08505 -8.66804 -8.22639 -7.54289 -6.28854 -4.36614 0.08926 0.17664 0.80742 2.10602 2.36430 2.58945 2.72661 3.21824 3.25663 3.29617 3.31345 3.57092 3.75347 4.14737 4.27690 4.43867 4.64936 4.69419 4.80763 5.03010 5.05678 5.10408 5.18841 5.27930 5.28272 5.31379 5.42548 5.57482 5.61206 5.64386 5.66821 5.78544 5.86711 5.92812 5.96372 5.97483 6.19451 6.30666 6.42623 6.48313 6.62878 6.82747 6.97913 7.07203 7.46246 7.63570 7.69656 7.85388 8.01501 8.36828 8.62684 8.72169 9.30211 10.78584 Molecular weight = 363.15amu Principal moments of inertia in cm(-1) A = 0.023133 B = 0.001619 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.099296 B =17285.553149 C =17624.193367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.038 4.038 3 C 0.005 3.995 4 N -0.226 5.226 5 N -0.272 5.272 6 C 0.236 3.764 7 N -0.632 5.632 8 C 0.506 3.494 9 O -0.463 6.463 10 C -0.126 4.126 11 C -0.012 4.012 12 C -0.271 4.271 13 C 0.051 3.949 14 C -0.064 4.064 15 N -0.296 5.296 16 N -0.324 5.324 17 C 0.257 3.743 18 C -0.538 4.538 19 H 0.064 0.936 20 C 0.067 3.933 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.096 3.904 27 C -0.093 4.093 28 S 0.095 5.905 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.425 0.575 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.269 0.731 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.627 -26.258 -6.519 31.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.080 4.080 3 C -0.278 4.278 4 N -0.061 5.061 5 N -0.116 5.116 6 C -0.134 4.134 7 N -0.286 5.286 8 C 0.291 3.709 9 O -0.329 6.329 10 C -0.167 4.167 11 C -0.051 4.051 12 C -0.283 4.283 13 C -0.113 4.113 14 C -0.123 4.123 15 N -0.119 5.119 16 N -0.104 5.104 17 C 0.139 3.861 18 C -0.577 4.577 19 H 0.082 0.918 20 C -0.137 4.137 21 N -0.529 5.529 22 Si 0.733 3.267 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.035 4.035 27 C -0.151 4.151 28 S 0.335 5.665 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.264 0.736 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.235 -24.744 -5.819 29.636 hybrid contribution 0.637 0.027 0.365 0.735 sum -14.598 -24.717 -5.455 29.220 Atomic orbital electron populations 1.21802 0.93185 1.02890 1.02920 1.20149 0.96862 0.86240 1.04773 1.29971 1.06184 1.03210 0.88405 1.71444 1.10739 0.98068 1.25898 1.71555 1.18071 1.07474 1.14513 1.26043 1.00949 0.93514 0.92934 1.43412 1.64928 1.08296 1.11925 1.21686 0.76862 0.86170 0.86192 1.90860 1.47012 1.79055 1.16022 1.21818 1.03255 0.89650 1.01981 1.19427 1.01638 0.89943 0.94097 1.19283 0.91738 0.97035 1.20277 1.21957 0.96173 0.91618 1.01564 1.20025 0.88131 1.01951 1.02208 1.77284 0.87936 1.22249 1.24473 1.49269 1.06260 1.07592 1.47246 1.19658 0.77830 0.91087 0.97492 1.21278 1.11953 1.30224 0.94205 0.91825 1.24921 0.96124 0.95847 0.96794 1.69906 1.20875 1.38399 1.23755 0.86415 0.78352 0.79554 0.82393 1.19917 1.20919 1.19934 1.20774 0.96019 0.87124 0.99619 1.20417 0.94837 0.97834 1.01992 1.84759 1.63585 1.06442 1.11750 0.92286 0.91016 0.91730 0.89212 0.88081 0.73640 0.88208 0.88226 0.91068 0.90977 0.91320 0.91584 0.91489 0.93076 0.93033 0.92181 0.91242 0.89898 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.89 37.16 0.37 -0.24 16 2 C -0.04 -0.18 6.56 -27.89 -0.18 -0.37 16 3 C 0.00 0.04 7.05 -13.25 -0.09 -0.05 16 4 N -0.23 -2.88 11.65 33.58 0.39 -2.49 16 5 N -0.27 -3.91 9.74 29.97 0.29 -3.62 16 6 C 0.24 2.53 8.14 -87.06 -0.71 1.82 16 7 N -0.63 -5.53 5.41 -12.92 -0.07 -5.60 16 8 C 0.51 5.79 7.79 -10.99 -0.09 5.71 16 9 O -0.46 -7.44 14.66 5.55 0.08 -7.36 16 10 C -0.13 -1.27 5.68 -27.89 -0.16 -1.43 16 11 C -0.01 -0.16 4.45 -27.88 -0.12 -0.29 16 12 C -0.27 -4.64 5.35 -105.05 -0.56 -5.20 16 13 C 0.05 0.95 7.22 -82.40 -0.59 0.35 16 14 C -0.06 -0.89 10.12 36.01 0.36 -0.52 16 15 N -0.30 -6.65 12.58 33.67 0.42 -6.22 16 16 N -0.32 -7.39 3.60 -58.32 -0.21 -7.60 16 17 C 0.26 6.49 5.81 -5.19 -0.03 6.46 16 18 C -0.54 -14.76 9.39 -34.44 -0.32 -15.08 16 19 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 22 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 26 C 0.10 1.85 6.93 -82.27 -0.57 1.28 16 27 C -0.09 -1.47 9.68 36.01 0.35 -1.12 16 28 S 0.09 0.66 23.31 -107.50 -2.51 -1.85 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.43 1.92 8.82 -40.82 -0.36 1.56 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.01 7.10 -51.93 -0.37 0.64 16 38 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.74 7.92 -51.93 -0.41 0.33 16 42 H 0.05 1.27 7.68 -51.93 -0.40 0.87 16 43 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 47 H 0.07 1.04 7.14 -51.93 -0.37 0.67 16 LS Contribution 414.57 15.07 6.25 6.25 Total: -1.00 -36.00 414.57 -9.00 -45.00 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.92 Total: -1.50 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.45 Total: -6.97 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 1.56 Total: -49.69 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.08 Total: -7.36 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.51 Total: -1.85 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.00 -9.00 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013017170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.279 kcal (2) G-P(sol) polarization free energy of solvation -36.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds