Wall clock time and date at job start Tue Mar 31 2020 05:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.46947 * 2 1 4 4 N 1.29526 * 126.14595 * 89.96016 * 3 2 1 5 5 N 1.26255 * 116.57932 * 179.75241 * 4 3 2 6 6 C 1.29892 * 117.65815 * 0.53122 * 5 4 3 7 7 N 1.39071 * 125.64970 * 179.76152 * 6 5 4 8 8 C 1.34777 * 120.00252 * 359.70043 * 7 6 5 9 9 O 1.21288 * 119.99593 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.39877 * 126.03804 * 90.02450 * 12 11 10 14 14 C 1.50699 * 125.89849 * 359.95788 * 13 12 11 15 15 N 1.30837 * 108.20185 * 179.97438 * 13 12 11 16 16 N 1.40091 * 108.20322 * 0.02562 * 15 13 12 17 17 C 1.46494 * 126.03223 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.47304 * 90.02275 * 17 16 15 19 19 H 1.07993 * 119.99641 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99974 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00506 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00116 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46970 * 60.00134 * 22 20 18 24 24 H 1.48493 * 109.47164 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46789 * 300.00403 * 22 20 18 26 26 C 1.34943 * 107.92530 * 359.75682 * 16 15 13 27 27 C 1.50699 * 126.12512 * 180.23998 * 26 16 15 28 28 S 1.71311 * 108.69400 * 359.50580 * 6 5 4 29 29 H 1.09002 * 109.47053 * 60.00015 * 1 2 3 30 30 H 1.09002 * 109.47200 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47575 * 300.00321 * 1 2 3 32 32 H 1.08996 * 109.47177 * 240.00042 * 2 1 3 33 33 H 1.09001 * 109.47240 * 119.99465 * 2 1 3 34 34 H 0.97003 * 120.00108 * 179.69856 * 7 6 5 35 35 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 36 36 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 37 37 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 38 38 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 39 39 H 1.08992 * 109.47376 * 89.99804 * 14 13 12 40 40 H 1.09003 * 109.46949 * 210.00143 * 14 13 12 41 41 H 1.09001 * 109.47332 * 329.99951 * 14 13 12 42 42 H 1.09006 * 109.46820 * 210.02240 * 17 16 15 43 43 H 1.08996 * 109.47479 * 330.02113 * 17 16 15 44 44 H 0.96996 * 120.00710 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47581 * 270.17846 * 27 26 16 46 46 H 1.08996 * 109.47395 * 30.17544 * 27 26 16 47 47 H 1.09003 * 109.47313 * 150.17721 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2862 2.1414 1.0459 5 7 2.7059 3.3135 0.8361 6 6 2.8354 3.6956 -0.3986 7 7 3.2769 4.9459 -0.8181 8 6 3.6076 5.8839 0.0915 9 8 3.5197 5.6377 1.2758 10 6 4.0854 7.2389 -0.3631 11 6 4.3924 8.1077 0.8583 12 6 4.8708 9.4625 0.4037 13 6 4.0656 10.5791 0.1560 14 6 2.5662 10.6360 0.2969 15 7 4.8389 11.5654 -0.2194 16 7 6.1625 11.1068 -0.2230 17 6 7.3458 11.8925 -0.5816 18 6 7.8952 12.5641 0.6506 19 1 7.4115 12.4197 1.6053 20 6 9.0159 13.3620 0.5592 21 7 9.6052 13.5375 -0.6034 22 14 9.6973 14.1940 2.0867 23 1 10.0721 13.1622 3.0867 24 1 10.8966 14.9905 1.7231 25 1 8.6643 15.0909 2.6642 26 6 6.1556 9.8152 0.1678 27 6 7.3624 8.9243 0.3126 28 16 2.3791 2.4017 -1.4245 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.3468 5.1428 -1.7653 35 1 3.3098 7.7154 -0.9627 36 1 4.9883 7.1234 -0.9626 37 1 5.1682 7.6310 1.4575 38 1 3.4896 8.2231 1.4581 39 1 2.3079 10.9414 1.3107 40 1 2.1617 11.3566 -0.4139 41 1 2.1447 9.6512 0.0956 42 1 8.1043 11.2342 -1.0053 43 1 7.0705 12.6495 -1.3158 44 1 10.3934 14.0991 -0.6678 45 1 7.5545 8.4162 -0.6324 46 1 8.2290 9.5275 0.5834 47 1 7.1768 8.1847 1.0916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013017170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:23 Heat of formation + Delta-G solvation = 61.612376 kcal Electronic energy + Delta-G solvation = -28793.018768 eV Core-core repulsion = 24717.374036 eV Total energy + Delta-G solvation = -4075.644731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.41926 -42.14209 -40.84285 -36.65836 -36.08660 -35.03147 -34.85630 -34.18680 -31.94834 -30.74618 -30.39176 -28.41515 -27.62530 -27.20391 -25.55647 -24.54440 -23.78984 -22.48493 -20.99988 -20.31561 -20.13967 -19.91097 -18.82575 -18.55279 -17.79340 -17.34314 -17.19786 -16.39238 -16.20861 -16.05318 -15.70325 -15.35108 -14.97402 -14.83661 -14.61096 -14.42925 -14.39929 -14.10758 -14.01808 -13.67503 -13.54568 -13.42132 -13.24353 -13.23350 -12.88450 -12.78919 -12.68697 -12.63482 -12.58157 -12.36906 -12.22223 -12.14158 -11.90980 -11.73465 -11.65659 -11.30420 -11.14435 -10.78065 -10.75770 -10.58838 -9.85287 -9.83659 -9.04638 -8.35643 -6.53348 -0.58686 -0.46248 0.13620 1.17129 1.30283 1.35355 1.36587 1.45632 1.66124 1.79578 1.93681 1.98702 2.32264 2.93845 3.12084 3.47728 3.83041 3.91035 3.93676 4.06223 4.19523 4.24305 4.31130 4.31774 4.38950 4.58754 4.65867 4.72307 4.75265 4.77430 4.79655 4.85756 4.87487 4.91235 4.94676 5.01938 5.05350 5.10270 5.15051 5.30440 5.35217 5.41902 5.49460 5.56058 5.79840 5.99334 6.04879 6.31332 6.61799 6.90962 7.11804 7.18136 7.64781 8.69964 Molecular weight = 363.15amu Principal moments of inertia in cm(-1) A = 0.023133 B = 0.001619 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.099296 B =17285.553149 C =17624.193367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.005 3.995 4 N -0.274 5.274 5 N -0.324 5.324 6 C 0.207 3.793 7 N -0.617 5.617 8 C 0.513 3.487 9 O -0.516 6.516 10 C -0.116 4.116 11 C -0.007 4.007 12 C -0.258 4.258 13 C 0.055 3.945 14 C -0.063 4.063 15 N -0.349 5.349 16 N -0.355 5.355 17 C 0.276 3.724 18 C -0.556 4.556 19 H 0.046 0.954 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.968 3.032 23 H -0.266 1.266 24 H -0.271 1.271 25 H -0.277 1.277 26 C 0.081 3.919 27 C -0.088 4.088 28 S 0.183 5.817 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.445 0.555 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.020 0.980 44 H 0.274 0.726 45 H 0.096 0.904 46 H 0.057 0.943 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 -28.684 -7.702 34.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 C -0.277 4.277 4 N -0.109 5.109 5 N -0.168 5.168 6 C -0.163 4.163 7 N -0.273 5.273 8 C 0.299 3.701 9 O -0.386 6.386 10 C -0.156 4.156 11 C -0.046 4.046 12 C -0.269 4.269 13 C -0.110 4.110 14 C -0.122 4.122 15 N -0.173 5.173 16 N -0.135 5.135 17 C 0.156 3.844 18 C -0.594 4.594 19 H 0.064 0.936 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.792 3.208 23 H -0.191 1.191 24 H -0.195 1.195 25 H -0.202 1.202 26 C -0.049 4.049 27 C -0.146 4.146 28 S 0.424 5.576 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.287 0.713 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.038 0.962 44 H 0.083 0.917 45 H 0.114 0.886 46 H 0.076 0.924 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.324 -27.204 -7.056 32.501 hybrid contribution 0.835 0.611 0.647 1.220 sum -15.489 -26.593 -6.409 31.436 Atomic orbital electron populations 1.21800 0.92514 1.04078 1.02161 1.20423 0.97289 0.84242 1.06336 1.30726 1.03779 1.04387 0.88835 1.71406 1.13150 0.98429 1.27940 1.71485 1.19558 1.08695 1.17083 1.26283 1.01542 0.94901 0.93604 1.43166 1.64045 1.07436 1.12609 1.21795 0.75889 0.86728 0.85645 1.90854 1.49474 1.80049 1.18251 1.21703 1.04974 0.88395 1.00496 1.19387 1.01231 0.88404 0.95579 1.19621 0.90686 0.98196 1.18425 1.22780 0.98080 0.90958 0.99142 1.20212 0.84946 1.04182 1.02837 1.77220 0.88275 1.24573 1.27205 1.49001 1.05793 1.08732 1.49940 1.19117 0.78858 0.90465 0.95914 1.21421 1.12523 1.31230 0.94232 0.93564 1.25704 0.96162 0.96122 0.99703 1.69985 1.21232 1.38803 1.25429 0.85459 0.77839 0.78608 0.78917 1.19128 1.19534 1.20202 1.21443 0.98041 0.86188 0.99190 1.20494 0.92551 0.97423 1.04161 1.84385 1.61537 1.03134 1.08589 0.91799 0.88879 0.93724 0.86213 0.87939 0.71253 0.85737 0.86254 0.91730 0.91062 0.90600 0.91026 0.88220 0.93413 0.96191 0.91718 0.88553 0.92411 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 71.98 0.71 -0.17 16 2 C -0.04 -0.30 6.56 29.85 0.20 -0.10 16 3 C 0.01 0.08 7.05 88.45 0.62 0.71 16 4 N -0.27 -7.00 11.65 -47.67 -0.56 -7.56 16 5 N -0.32 -9.35 9.74 -59.10 -0.58 -9.93 16 6 C 0.21 4.16 8.14 179.10 1.46 5.62 16 7 N -0.62 -9.50 5.41 -313.16 -1.69 -11.20 16 8 C 0.51 10.91 7.79 87.66 0.68 11.60 16 9 O -0.52 -16.51 14.66 -3.05 -0.04 -16.56 16 10 C -0.12 -2.00 5.68 29.85 0.17 -1.83 16 11 C -0.01 -0.18 4.45 29.85 0.13 -0.04 16 12 C -0.26 -8.55 5.35 -20.14 -0.11 -8.65 16 13 C 0.06 2.00 7.22 43.10 0.31 2.31 16 14 C -0.06 -1.61 10.12 71.24 0.72 -0.89 16 15 N -0.35 -16.06 12.58 -47.38 -0.60 -16.66 16 16 N -0.35 -16.69 3.60 -338.41 -1.22 -17.91 16 17 C 0.28 14.61 5.81 85.64 0.50 15.11 16 18 C -0.56 -31.60 9.39 25.60 0.24 -31.36 16 19 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 20 C 0.02 1.34 5.46 84.65 0.46 1.81 16 21 N -0.92 -52.08 13.29 21.45 0.28 -51.80 16 22 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 26 C 0.08 3.12 6.93 41.40 0.29 3.40 16 27 C -0.09 -2.76 9.68 71.24 0.69 -2.07 16 28 S 0.18 2.04 23.31 -56.49 -1.32 0.72 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.45 2.62 8.82 -92.71 -0.82 1.80 16 35 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.75 7.10 -2.39 -0.02 1.74 16 38 H 0.07 1.85 7.88 -2.39 -0.02 1.83 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.10 1.88 7.92 -2.39 -0.02 1.86 16 42 H 0.05 2.50 7.68 -2.38 -0.02 2.48 16 43 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 45 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.06 2.10 7.74 -2.39 -0.02 2.08 16 47 H 0.10 2.58 7.14 -2.39 -0.02 2.56 16 Total: -1.00 -83.97 414.57 3.58 -80.39 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.19 Total: 9.32 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 7.08 Total: -4.56 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -4.35 Total: -115.05 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.04 Total: -16.56 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.32 Total: 0.72 kcal Total: -83.97 3.58 -80.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013017170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.007 kcal (2) G-P(sol) polarization free energy of solvation -83.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds