Wall clock time and date at job start Tue Mar 31 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36492 * 119.87807 * 2 1 4 4 S 1.76200 * 119.23849 * 359.97438 * 3 2 1 5 5 C 1.80994 * 100.00076 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47089 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00092 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99842 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00075 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47344 * 89.99842 * 10 8 6 12 12 H 1.48498 * 109.47074 * 210.00205 * 10 8 6 13 13 H 1.48500 * 109.47009 * 330.00005 * 10 8 6 14 14 N 1.31134 * 121.52595 * 180.02562 * 3 2 1 15 15 C 1.34856 * 121.61277 * 359.97438 * 14 3 2 16 16 S 1.75869 * 130.48766 * 179.97438 * 15 14 3 17 17 C 1.75283 * 92.38312 * 180.02562 * 16 15 14 18 18 C 1.33338 * 111.21761 * 359.97438 * 17 16 15 19 19 C 1.47777 * 122.82190 * 179.97438 * 18 17 16 20 20 C 1.34820 * 125.27172 * 310.02013 * 19 18 17 21 21 C 1.38098 * 114.66753 * 179.75281 * 20 19 18 22 22 C 1.33519 * 115.06129 * 0.25564 * 21 20 19 23 23 S 1.75853 * 109.79091 * 359.97438 * 22 21 20 24 24 C 1.39127 * 119.60493 * 0.25402 * 15 14 3 25 25 C 1.34701 * 119.88210 * 179.97438 * 2 1 3 26 26 O 1.21922 * 120.52496 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.47447 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.47313 * 120.00581 * 1 2 3 29 29 H 1.09001 * 109.47127 * 240.00095 * 1 2 3 30 30 H 1.09000 * 109.47331 * 299.99765 * 5 4 3 31 31 H 1.09001 * 109.47649 * 59.99874 * 5 4 3 32 32 H 0.97003 * 119.99775 * 180.02562 * 9 8 6 33 33 H 1.08002 * 124.39309 * 179.97438 * 17 16 15 34 34 H 1.08002 * 122.66972 * 0.03428 * 20 19 18 35 35 H 1.08002 * 122.46654 * 180.26807 * 21 20 19 36 36 H 1.07999 * 125.10121 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1449 1.1835 0.0000 4 16 1.2405 2.6957 -0.0007 5 6 2.6089 3.8803 -0.0012 6 6 2.0587 5.2833 -0.0025 7 1 0.9909 5.4446 -0.0025 8 6 2.9187 6.3611 -0.0026 9 7 4.2190 6.1647 -0.0020 10 14 2.2366 8.1001 -0.0034 11 1 2.0554 8.5615 1.3965 12 1 3.1849 9.0034 -0.7034 13 1 0.9274 8.1180 -0.7039 14 7 3.4557 1.2212 -0.0005 15 6 4.1954 0.0936 -0.0005 16 16 5.9401 -0.1277 -0.0017 17 6 5.7921 -1.8742 -0.0016 18 6 4.5128 -2.2501 -0.0001 19 6 4.0943 -3.6674 -0.0002 20 6 4.5517 -4.6141 -0.8442 21 6 4.0148 -5.8710 -0.6459 22 6 3.1236 -5.9555 0.3446 23 16 2.9203 -4.3799 1.0987 24 6 3.5608 -1.1446 -0.0054 25 6 2.1361 -1.1679 0.0005 26 8 1.5340 -2.2281 0.0015 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8898 29 1 -0.3633 -0.5138 0.8900 30 1 3.2199 3.7301 0.8888 31 1 3.2200 3.7293 -0.8911 32 1 4.8240 6.9230 -0.0017 33 1 6.6286 -2.5574 -0.0025 34 1 5.2833 -4.4072 -1.6112 35 1 4.2954 -6.7228 -1.2477 36 1 2.6054 -6.8563 0.6386 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014092837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:07 Heat of formation + Delta-G solvation = 58.739775 kcal Electronic energy + Delta-G solvation = -24284.652778 eV Core-core repulsion = 20692.711621 eV Total energy + Delta-G solvation = -3591.941157 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 364.011 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39917 -38.14041 -37.40007 -36.42249 -34.10049 -33.29959 -30.29041 -28.77497 -28.59144 -27.71779 -25.21940 -24.34781 -23.50204 -23.06838 -21.09420 -19.15738 -18.97440 -18.15159 -17.26204 -16.76803 -16.39062 -16.34175 -16.17214 -15.51615 -15.10573 -14.65491 -14.10025 -13.75055 -13.62625 -13.33893 -13.30354 -13.03436 -12.92712 -12.75686 -12.59297 -12.48823 -12.48081 -12.31546 -11.73589 -11.14821 -11.07696 -10.98937 -10.72184 -10.67972 -10.06273 -9.99523 -9.86629 -9.73618 -9.45973 -8.90079 -8.83191 -8.54131 -8.23128 -8.04424 -7.24959 -6.33439 -4.42849 0.29815 0.78843 1.12318 1.48490 1.49581 1.85755 1.96322 2.03494 2.31020 2.56806 2.80428 3.12687 3.16904 3.23768 3.28663 3.59569 4.21678 4.37909 4.60801 4.68562 5.02450 5.03607 5.05911 5.23716 5.25852 5.26375 5.49246 5.54628 5.60100 5.76132 5.98630 6.05081 6.09457 6.31823 6.45313 6.59187 6.93463 7.06283 7.52657 7.66323 7.77092 7.87293 8.57878 9.22043 10.76509 Molecular weight = 364.01amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.002697 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.958149 B =10377.997835 C =11627.090412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.522 5.522 3 C 0.383 3.617 4 S -0.026 6.026 5 C 0.072 3.928 6 C -0.533 4.533 7 H 0.068 0.932 8 C 0.074 3.926 9 N -0.879 5.879 10 Si 0.908 3.092 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.270 1.270 14 N -0.507 5.507 15 C 0.117 3.883 16 S 0.208 5.792 17 C -0.229 4.229 18 C 0.034 3.966 19 C -0.121 4.121 20 C -0.134 4.134 21 C -0.138 4.138 22 C -0.236 4.236 23 S 0.179 5.821 24 C -0.261 4.261 25 C 0.561 3.439 26 O -0.518 6.518 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.269 0.731 33 H 0.176 0.824 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 -18.308 0.401 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.244 5.244 3 C 0.009 3.991 4 S 0.211 5.789 5 C -0.075 4.075 6 C -0.573 4.573 7 H 0.086 0.914 8 C -0.132 4.132 9 N -0.515 5.515 10 Si 0.734 3.266 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.195 1.195 14 N -0.235 5.235 15 C -0.122 4.122 16 S 0.472 5.528 17 C -0.367 4.367 18 C 0.021 3.979 19 C -0.242 4.242 20 C -0.166 4.166 21 C -0.169 4.169 22 C -0.373 4.373 23 S 0.447 5.553 24 C -0.281 4.281 25 C 0.355 3.645 26 O -0.395 6.395 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.193 0.807 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.788 -16.506 1.623 16.604 hybrid contribution 0.422 -1.486 -1.275 2.003 sum -0.366 -17.991 0.348 17.998 Atomic orbital electron populations 1.22189 0.76139 1.04929 1.04484 1.46366 1.09967 1.05830 1.62262 1.25929 0.91059 0.92324 0.89783 1.85808 1.16322 0.90763 1.86011 1.21557 0.90664 0.92060 1.03182 1.20586 0.93659 0.88169 1.54871 0.91386 1.24922 0.94677 0.99487 0.94153 1.69962 1.01849 1.31957 1.47774 0.86339 0.78968 0.82794 0.78490 1.20192 1.20793 1.19484 1.68740 1.01804 1.25988 1.26992 1.23926 0.99985 0.91205 0.97094 1.84227 0.96691 0.98515 1.73396 1.25239 0.99451 0.99171 1.12811 1.17031 0.90714 0.89181 1.01001 1.22451 1.03677 0.95092 1.02945 1.20257 1.03363 0.91947 1.01042 1.19930 0.99251 0.97901 0.99829 1.25813 1.05775 1.01757 1.03965 1.84416 1.39224 0.98562 1.33065 1.20399 0.93600 0.92987 1.21114 1.16465 0.87043 0.83049 0.77936 1.90929 1.70149 1.27605 1.50847 0.88112 0.89713 0.89696 0.92271 0.92267 0.92145 0.80694 0.84491 0.84661 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 9.98 59.85 0.60 1.41 16 2 N -0.52 -8.65 3.01 -126.53 -0.38 -9.03 16 3 C 0.38 7.02 7.79 -88.51 -0.69 6.33 16 4 S -0.03 -0.48 19.66 -107.50 -2.11 -2.59 16 5 C 0.07 1.70 4.57 36.00 0.16 1.87 16 6 C -0.53 -13.54 9.13 -34.44 -0.31 -13.85 16 7 H 0.07 1.67 7.71 -52.49 -0.40 1.26 16 8 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 9 N -0.88 -24.08 13.29 55.43 0.74 -23.34 16 10 Si 0.91 19.82 29.54 -169.99 -5.02 14.80 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 14 N -0.51 -10.01 9.13 -11.44 -0.10 -10.12 16 15 C 0.12 2.10 7.67 -15.89 -0.12 1.98 16 16 S 0.21 2.95 23.22 -107.50 -2.50 0.46 16 17 C -0.23 -2.91 10.77 29.02 0.31 -2.60 16 18 C 0.03 0.53 5.81 -104.65 -0.61 -0.08 16 19 C -0.12 -1.75 5.53 -36.90 -0.20 -1.95 16 20 C -0.13 -1.66 10.02 -40.84 -0.41 -2.07 16 21 C -0.14 -1.52 10.16 -41.28 -0.42 -1.94 16 22 C -0.24 -2.66 11.22 29.08 0.33 -2.34 16 23 S 0.18 2.46 20.87 -107.50 -2.24 0.22 16 24 C -0.26 -4.58 6.07 -104.87 -0.64 -5.21 16 25 C 0.56 10.01 7.49 -14.66 -0.11 9.90 16 26 O -0.52 -9.47 13.89 4.99 0.07 -9.41 16 27 H 0.10 1.18 5.75 -46.94 -0.27 0.91 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.50 8.11 -51.92 -0.42 1.08 16 31 H 0.06 1.51 8.11 -51.92 -0.42 1.08 16 32 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.18 1.67 8.06 -52.49 -0.42 1.24 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -29.55 352.08 -11.65 -41.19 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -3.19 Total: -0.74 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -2.21 Total: -6.74 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.25 Total: -42.49 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -6.85 Total: -1.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.55 -11.65 -41.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014092837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.931 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds