Wall clock time and date at job start Tue Mar 31 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46809 * 2 1 4 4 C 1.52993 * 109.47311 * 119.99617 * 2 1 3 5 5 N 1.46503 * 109.46975 * 65.00354 * 4 2 1 6 6 C 1.36488 * 119.88123 * 270.02416 * 5 4 2 7 7 S 1.76201 * 119.16738 * 359.96108 * 6 5 4 8 8 C 1.81002 * 100.00205 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47065 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00029 * 359.97438 * 9 8 7 11 11 C 1.37886 * 120.00029 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00004 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99654 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47322 * 89.99909 * 13 11 9 15 15 H 1.48505 * 109.46472 * 209.99923 * 13 11 9 16 16 H 1.48500 * 109.47199 * 329.99683 * 13 11 9 17 17 N 1.31150 * 121.66961 * 179.97438 * 6 5 4 18 18 C 1.34971 * 121.43204 * 0.02691 * 17 6 5 19 19 S 1.75549 * 130.74649 * 180.02562 * 18 17 6 20 20 C 1.76294 * 92.44231 * 179.97438 * 19 18 17 21 21 C 1.32515 * 111.27953 * 0.04775 * 20 19 18 22 22 C 1.38652 * 119.65637 * 359.97438 * 18 17 6 23 23 C 1.34778 * 119.88290 * 90.00075 * 5 4 2 24 24 O 1.21907 * 120.65187 * 0.08227 * 23 5 4 25 25 C 1.52861 * 110.21438 * 179.97438 * 21 20 19 26 26 C 1.54421 * 104.90710 * 17.60172 * 25 21 20 27 27 C 1.52599 * 138.19671 * 180.02562 * 20 19 18 28 28 H 1.09009 * 109.46636 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47618 * 299.99945 * 1 2 3 30 30 H 1.09002 * 109.47153 * 60.00143 * 1 2 3 31 31 H 1.08995 * 109.47321 * 240.00504 * 2 1 3 32 32 H 1.08993 * 109.47623 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47147 * 299.99861 * 3 2 1 34 34 H 1.09007 * 109.47213 * 59.99627 * 3 2 1 35 35 H 1.09003 * 109.47156 * 305.00739 * 4 2 1 36 36 H 1.08993 * 109.47565 * 185.00324 * 4 2 1 37 37 H 1.09006 * 109.47005 * 300.00114 * 8 7 6 38 38 H 1.08992 * 109.46915 * 60.00216 * 8 7 6 39 39 H 0.96998 * 120.00335 * 180.02562 * 12 11 9 40 40 H 1.09001 * 110.35624 * 136.43969 * 25 21 20 41 41 H 1.09001 * 110.35520 * 258.62346 * 25 21 20 42 42 H 1.09002 * 111.10306 * 215.39013 * 26 25 21 43 43 H 1.09004 * 111.04177 * 91.44309 * 26 25 21 44 44 H 1.09002 * 110.36533 * 281.34522 * 27 20 19 45 45 H 1.08995 * 110.36551 * 43.55538 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 1.6525 -2.1328 1.1906 6 6 0.4612 -2.5336 1.7226 7 16 -0.5901 -1.3357 2.4739 8 6 -1.9655 -2.3979 2.9801 9 6 -3.0178 -1.5647 3.6651 10 1 -2.8719 -0.5012 3.7838 11 6 -4.1666 -2.1603 4.1413 12 7 -5.0848 -1.4333 4.7395 13 14 -4.4187 -3.9999 3.9366 14 1 -3.8592 -4.7102 5.1145 15 1 -5.8707 -4.2912 3.8266 16 1 -3.7267 -4.4604 2.7061 17 7 0.0793 -3.7878 1.6890 18 6 0.8488 -4.7430 1.1258 19 16 0.5844 -6.4692 0.9465 20 6 2.1267 -6.6962 0.1231 21 6 2.7800 -5.5498 0.0011 22 6 2.0707 -4.3992 0.5680 23 6 2.4735 -3.0309 0.6111 24 8 3.5397 -2.6815 0.1344 25 6 4.1119 -5.7745 -0.7145 26 6 3.9659 -7.1488 -1.4035 27 6 2.9303 -7.8381 -0.4924 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.1299 1.4427 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6053 -0.2616 2.1369 36 1 3.1263 -0.6442 1.2952 37 1 -2.3970 -2.8771 2.1013 38 1 -1.6011 -3.1609 3.6679 39 1 -5.8928 -1.8523 5.0749 40 1 4.2797 -4.9944 -1.4572 41 1 4.9304 -5.7942 0.0051 42 1 4.9111 -7.6917 -1.4006 43 1 3.5831 -7.0392 -2.4182 44 1 3.4319 -8.4120 0.2869 45 1 2.2801 -8.4858 -1.0803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014118413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:07 Heat of formation + Delta-G solvation = 13.156965 kcal Electronic energy + Delta-G solvation = -28351.239158 eV Core-core repulsion = 24586.234700 eV Total energy + Delta-G solvation = -3765.004458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58776 -38.94351 -37.43572 -36.74575 -33.95500 -33.23428 -32.37560 -29.56732 -28.65358 -28.01286 -27.37542 -27.10005 -24.33266 -23.87475 -22.70555 -21.22604 -20.45284 -19.55476 -18.64366 -17.93781 -17.19654 -16.96428 -16.51485 -16.26423 -15.71136 -15.27355 -14.90991 -14.64298 -14.31984 -14.06292 -13.72920 -13.47083 -13.12960 -12.99475 -12.92527 -12.83821 -12.56919 -12.54054 -12.44555 -12.34758 -12.08172 -11.94642 -11.46296 -11.31749 -11.21290 -11.11840 -10.98689 -10.92157 -10.87531 -10.78669 -10.30642 -10.12984 -9.89923 -9.80827 -9.66967 -9.43052 -8.85152 -8.52569 -8.16986 -7.20277 -6.32609 -4.38775 0.29962 1.01270 1.39985 1.68778 1.91511 2.05371 2.48999 2.98383 3.19216 3.27942 3.32471 3.53080 4.20691 4.23033 4.36986 4.40906 4.65454 4.69513 4.78832 4.80438 4.93554 5.00804 5.01723 5.28750 5.32213 5.34808 5.43038 5.49208 5.55253 5.57746 5.70030 5.71845 5.77381 5.85730 5.90277 5.94207 5.97554 6.03018 6.06237 6.26810 6.28571 6.44353 6.53841 6.57726 6.60833 7.22176 7.59756 7.84072 8.08265 8.62582 9.22424 10.78236 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.008820 B = 0.004167 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3173.678370 B = 6717.788666 C = 9596.024544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 C -0.142 4.142 4 C 0.093 3.907 5 N -0.516 5.516 6 C 0.375 3.625 7 S 0.024 5.976 8 C 0.019 3.981 9 C -0.530 4.530 10 H 0.084 0.916 11 C 0.089 3.911 12 N -0.885 5.885 13 Si 0.872 3.128 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.258 1.258 17 N -0.513 5.513 18 C 0.113 3.887 19 S 0.201 5.799 20 C -0.241 4.241 21 C -0.043 4.043 22 C -0.247 4.247 23 C 0.566 3.434 24 O -0.530 6.530 25 C -0.058 4.058 26 C -0.118 4.118 27 C -0.035 4.035 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.271 0.729 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.948 -5.968 -10.571 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.127 4.127 3 C -0.199 4.199 4 C -0.029 4.029 5 N -0.238 5.238 6 C 0.001 3.999 7 S 0.262 5.738 8 C -0.129 4.129 9 C -0.570 4.570 10 H 0.102 0.898 11 C -0.117 4.117 12 N -0.521 5.521 13 Si 0.698 3.302 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.182 1.182 17 N -0.242 5.242 18 C -0.126 4.126 19 S 0.466 5.534 20 C -0.358 4.358 21 C -0.054 4.054 22 C -0.266 4.266 23 C 0.361 3.639 24 O -0.408 6.408 25 C -0.097 4.097 26 C -0.157 4.157 27 C -0.075 4.075 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.663 -5.871 -9.883 18.632 hybrid contribution 1.182 -1.109 -0.710 1.770 sum 15.845 -6.980 -10.594 20.298 Atomic orbital electron populations 1.22264 0.93621 1.02641 1.02800 1.21462 0.97260 0.96711 0.97314 1.21742 1.00929 0.94667 1.02604 1.22234 1.02827 0.77316 1.00567 1.46440 1.16687 1.11216 1.49431 1.25954 0.87243 0.95474 0.91200 1.86098 1.16378 1.08282 1.63034 1.21900 0.92996 0.96928 1.01070 1.20355 1.01189 0.96196 1.39213 0.89764 1.24760 0.94918 0.98345 0.93675 1.69840 1.08803 1.36260 1.37222 0.86861 0.77988 0.85327 0.80007 1.19644 1.20718 1.18206 1.68779 1.31705 0.97089 1.26654 1.23653 0.92917 0.99537 0.96463 1.83926 1.15947 0.95923 1.57599 1.25354 0.99663 1.00451 1.10289 1.20682 0.96821 0.89694 0.98242 1.20170 0.98193 0.94026 1.14217 1.16573 0.83958 0.84870 0.78518 1.90850 1.21880 1.80782 1.47309 1.21109 0.92767 0.97251 0.98621 1.22372 0.99023 0.95437 0.98870 1.20837 0.95065 0.93822 0.97773 0.92625 0.90492 0.92398 0.90790 0.92495 0.91981 0.91914 0.87937 0.87955 0.92387 0.93068 0.91931 0.90277 0.90066 0.89990 0.90611 0.90115 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 7.52 37.16 0.28 -1.76 16 2 C -0.11 -1.31 3.13 -90.62 -0.28 -1.60 16 3 C -0.14 -1.35 9.19 37.16 0.34 -1.01 16 4 C 0.09 1.23 4.67 -4.04 -0.02 1.21 16 5 N -0.52 -8.44 2.49 -119.02 -0.30 -8.74 16 6 C 0.37 6.68 6.48 -88.50 -0.57 6.11 16 7 S 0.02 0.43 16.03 -107.50 -1.72 -1.29 16 8 C 0.02 0.42 3.63 36.00 0.13 0.56 16 9 C -0.53 -13.80 9.68 -34.44 -0.33 -14.13 16 10 H 0.08 2.34 7.95 -52.49 -0.42 1.92 16 11 C 0.09 2.41 5.47 -17.82 -0.10 2.31 16 12 N -0.88 -25.28 13.96 55.43 0.77 -24.50 16 13 Si 0.87 20.30 27.47 -169.99 -4.67 15.63 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 17 N -0.51 -9.86 9.14 -11.61 -0.11 -9.97 16 18 C 0.11 2.00 7.66 -16.02 -0.12 1.88 16 19 S 0.20 2.94 23.24 -107.50 -2.50 0.44 16 20 C -0.24 -3.16 7.25 -35.28 -0.26 -3.41 16 21 C -0.04 -0.64 6.59 -102.10 -0.67 -1.31 16 22 C -0.25 -4.29 6.07 -104.66 -0.64 -4.93 16 23 C 0.57 10.06 7.50 -14.54 -0.11 9.95 16 24 O -0.53 -9.89 16.66 5.00 0.08 -9.81 16 25 C -0.06 -0.68 6.83 -26.06 -0.18 -0.85 16 26 C -0.12 -0.99 7.15 -25.36 -0.18 -1.17 16 27 C -0.04 -0.33 6.81 -26.31 -0.18 -0.51 16 28 H 0.05 0.85 5.80 -51.92 -0.30 0.55 16 29 H 0.08 1.02 6.65 -51.93 -0.35 0.67 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.26 6.55 -51.93 -0.34 0.92 16 36 H 0.10 1.30 7.44 -51.93 -0.39 0.92 16 37 H 0.06 1.33 7.17 -51.91 -0.37 0.96 16 38 H 0.05 1.16 7.54 -51.92 -0.39 0.77 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -30.20 382.34 -11.93 -42.14 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.37 Total: -0.98 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.89 Total: -8.67 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.37 Total: -43.21 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.67 Total: 15.63 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -4.22 Total: -0.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.20 -11.93 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014118413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.293 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds