Wall clock time and date at job start Tue Mar 31 2020 06:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46809 * 2 1 4 4 C 1.52993 * 109.47311 * 119.99617 * 2 1 3 5 5 N 1.46503 * 109.46975 * 65.00354 * 4 2 1 6 6 C 1.36488 * 119.88123 * 270.02416 * 5 4 2 7 7 S 1.76201 * 119.16738 * 359.96108 * 6 5 4 8 8 C 1.81002 * 100.00205 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47065 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00029 * 359.97438 * 9 8 7 11 11 C 1.37886 * 120.00029 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00004 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99654 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47322 * 89.99909 * 13 11 9 15 15 H 1.48505 * 109.46472 * 209.99923 * 13 11 9 16 16 H 1.48500 * 109.47199 * 329.99683 * 13 11 9 17 17 N 1.31150 * 121.66961 * 179.97438 * 6 5 4 18 18 C 1.34971 * 121.43204 * 0.02691 * 17 6 5 19 19 S 1.75549 * 130.74649 * 180.02562 * 18 17 6 20 20 C 1.76294 * 92.44231 * 179.97438 * 19 18 17 21 21 C 1.32515 * 111.27953 * 0.04775 * 20 19 18 22 22 C 1.38652 * 119.65637 * 359.97438 * 18 17 6 23 23 C 1.34778 * 119.88290 * 90.00075 * 5 4 2 24 24 O 1.21907 * 120.65187 * 0.08227 * 23 5 4 25 25 C 1.52861 * 110.21438 * 179.97438 * 21 20 19 26 26 C 1.54421 * 104.90710 * 17.60172 * 25 21 20 27 27 C 1.52599 * 138.19671 * 180.02562 * 20 19 18 28 28 H 1.09009 * 109.46636 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47618 * 299.99945 * 1 2 3 30 30 H 1.09002 * 109.47153 * 60.00143 * 1 2 3 31 31 H 1.08995 * 109.47321 * 240.00504 * 2 1 3 32 32 H 1.08993 * 109.47623 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47147 * 299.99861 * 3 2 1 34 34 H 1.09007 * 109.47213 * 59.99627 * 3 2 1 35 35 H 1.09003 * 109.47156 * 305.00739 * 4 2 1 36 36 H 1.08993 * 109.47565 * 185.00324 * 4 2 1 37 37 H 1.09006 * 109.47005 * 300.00114 * 8 7 6 38 38 H 1.08992 * 109.46915 * 60.00216 * 8 7 6 39 39 H 0.96998 * 120.00335 * 180.02562 * 12 11 9 40 40 H 1.09001 * 110.35624 * 136.43969 * 25 21 20 41 41 H 1.09001 * 110.35520 * 258.62346 * 25 21 20 42 42 H 1.09002 * 111.10306 * 215.39013 * 26 25 21 43 43 H 1.09004 * 111.04177 * 91.44309 * 26 25 21 44 44 H 1.09002 * 110.36533 * 281.34522 * 27 20 19 45 45 H 1.08995 * 110.36551 * 43.55538 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 1.6525 -2.1328 1.1906 6 6 0.4612 -2.5336 1.7226 7 16 -0.5901 -1.3357 2.4739 8 6 -1.9655 -2.3979 2.9801 9 6 -3.0178 -1.5647 3.6651 10 1 -2.8719 -0.5012 3.7838 11 6 -4.1666 -2.1603 4.1413 12 7 -5.0848 -1.4333 4.7395 13 14 -4.4187 -3.9999 3.9366 14 1 -3.8592 -4.7102 5.1145 15 1 -5.8707 -4.2912 3.8266 16 1 -3.7267 -4.4604 2.7061 17 7 0.0793 -3.7878 1.6890 18 6 0.8488 -4.7430 1.1258 19 16 0.5844 -6.4692 0.9465 20 6 2.1267 -6.6962 0.1231 21 6 2.7800 -5.5498 0.0011 22 6 2.0707 -4.3992 0.5680 23 6 2.4735 -3.0309 0.6111 24 8 3.5397 -2.6815 0.1344 25 6 4.1119 -5.7745 -0.7145 26 6 3.9659 -7.1488 -1.4035 27 6 2.9303 -7.8381 -0.4924 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.1299 1.4427 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6053 -0.2616 2.1369 36 1 3.1263 -0.6442 1.2952 37 1 -2.3970 -2.8771 2.1013 38 1 -1.6011 -3.1609 3.6679 39 1 -5.8928 -1.8523 5.0749 40 1 4.2797 -4.9944 -1.4572 41 1 4.9304 -5.7942 0.0051 42 1 4.9111 -7.6917 -1.4006 43 1 3.5831 -7.0392 -2.4182 44 1 3.4319 -8.4120 0.2869 45 1 2.2801 -8.4858 -1.0803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014118413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:06 Heat of formation + Delta-G solvation = -1.599965 kcal Electronic energy + Delta-G solvation = -28351.879067 eV Core-core repulsion = 24586.234700 eV Total energy + Delta-G solvation = -3765.644366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.88747 -39.93371 -38.81154 -37.83918 -35.25697 -35.04523 -33.60386 -31.49736 -29.69245 -28.99294 -28.50966 -28.05133 -25.58623 -25.14375 -24.56566 -22.12467 -21.48613 -20.70011 -19.93344 -19.29213 -18.93800 -18.33930 -17.75345 -17.51306 -16.75183 -16.46294 -16.19954 -15.97518 -15.79394 -15.43732 -15.21423 -14.90774 -14.49666 -14.38895 -14.14760 -14.00423 -13.74062 -13.59375 -13.50382 -13.35192 -12.99693 -12.90705 -12.85324 -12.73265 -12.44262 -12.29711 -12.11917 -12.06060 -12.04037 -11.91357 -11.82461 -11.73480 -11.47055 -11.16943 -11.10538 -10.90462 -10.78647 -9.78742 -9.39136 -8.57241 -8.40456 -6.50370 -0.99924 -0.23898 0.02253 0.36411 0.77581 0.86082 1.10262 1.33439 1.36022 1.46563 1.49799 2.20352 2.27994 2.94381 3.07730 3.20248 3.41875 3.57310 3.66551 3.76184 3.97106 4.01988 4.15156 4.17419 4.25666 4.42122 4.54987 4.58895 4.68029 4.69598 4.73125 4.75634 4.80185 4.81876 4.90117 4.91961 4.94100 5.00604 5.12124 5.13293 5.23306 5.26649 5.30676 5.33156 5.36388 5.41278 5.99390 6.23934 6.48515 6.53112 7.14303 8.73715 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.008820 B = 0.004167 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3173.678370 B = 6717.788666 C = 9596.024544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.136 4.136 4 C 0.086 3.914 5 N -0.511 5.511 6 C 0.366 3.634 7 S 0.062 5.938 8 C 0.014 3.986 9 C -0.531 4.531 10 H 0.057 0.943 11 C 0.038 3.962 12 N -0.928 5.928 13 Si 0.931 3.069 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.251 1.251 17 N -0.534 5.534 18 C 0.077 3.923 19 S 0.220 5.780 20 C -0.221 4.221 21 C -0.078 4.078 22 C -0.257 4.257 23 C 0.558 3.442 24 O -0.546 6.546 25 C -0.058 4.058 26 C -0.106 4.106 27 C -0.035 4.035 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.274 0.726 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.802 -8.029 -11.946 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.121 4.121 3 C -0.194 4.194 4 C -0.035 4.035 5 N -0.232 5.232 6 C -0.008 4.008 7 S 0.300 5.700 8 C -0.134 4.134 9 C -0.570 4.570 10 H 0.075 0.925 11 C -0.164 4.164 12 N -0.567 5.567 13 Si 0.754 3.246 14 H -0.189 1.189 15 H -0.201 1.201 16 H -0.175 1.175 17 N -0.263 5.263 18 C -0.160 4.160 19 S 0.485 5.515 20 C -0.338 4.338 21 C -0.088 4.088 22 C -0.277 4.277 23 C 0.353 3.647 24 O -0.426 6.426 25 C -0.097 4.097 26 C -0.145 4.145 27 C -0.075 4.075 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.131 0.869 43 H 0.101 0.899 44 H 0.120 0.880 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.523 -7.938 -11.263 21.515 hybrid contribution 0.721 -0.479 -0.348 0.933 sum 17.244 -8.417 -11.611 22.429 Atomic orbital electron populations 1.22221 0.94367 1.01163 1.03390 1.21416 0.96457 0.98206 0.95979 1.21725 1.01491 0.92610 1.03592 1.22517 1.03435 0.75976 1.01588 1.46473 1.15933 1.12196 1.48641 1.25781 0.87762 0.95333 0.91954 1.85778 1.14502 1.06364 1.63388 1.21615 0.94216 0.97239 1.00356 1.20532 1.02223 0.95408 1.38854 0.92512 1.25571 0.94784 1.02628 0.93448 1.69955 1.09632 1.38228 1.38837 0.85930 0.78134 0.80206 0.80322 1.18914 1.20107 1.17491 1.68685 1.32709 0.97861 1.27060 1.23997 0.93471 1.00825 0.97753 1.83787 1.16902 0.93629 1.57181 1.26011 0.98272 1.01655 1.07861 1.21084 0.98764 0.89203 0.99779 1.20573 0.98528 0.94710 1.13843 1.16773 0.83941 0.85395 0.78546 1.90824 1.22419 1.81134 1.48176 1.21214 0.91184 0.98994 0.98344 1.22414 1.00280 0.93245 0.98520 1.21101 0.95057 0.92780 0.98546 0.95076 0.90649 0.90981 0.92182 0.91605 0.90918 0.91026 0.87038 0.87245 0.93005 0.93444 0.91676 0.91520 0.89703 0.86943 0.89947 0.88038 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 7.52 71.98 0.54 -3.46 16 2 C -0.10 -2.40 3.13 -10.79 -0.03 -2.43 16 3 C -0.14 -2.37 9.19 71.98 0.66 -1.71 16 4 C 0.09 2.25 4.67 86.38 0.40 2.66 16 5 N -0.51 -16.90 2.49 -648.58 -1.61 -18.51 16 6 C 0.37 13.25 6.48 179.61 1.16 14.41 16 7 S 0.06 2.28 16.03 -56.49 -0.91 1.37 16 8 C 0.01 0.64 3.63 71.23 0.26 0.90 16 9 C -0.53 -28.36 9.68 25.60 0.25 -28.11 16 10 H 0.06 3.27 7.95 -2.91 -0.02 3.25 16 11 C 0.04 2.07 5.47 84.66 0.46 2.54 16 12 N -0.93 -54.28 13.96 21.45 0.30 -53.98 16 13 Si 0.93 42.16 27.47 68.60 1.88 44.05 16 14 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 17 N -0.53 -20.78 9.14 -190.64 -1.74 -22.52 16 18 C 0.08 2.73 7.66 84.31 0.65 3.38 16 19 S 0.22 6.14 23.24 -56.49 -1.31 4.83 16 20 C -0.22 -5.30 7.25 25.16 0.18 -5.11 16 21 C -0.08 -2.21 6.59 -18.13 -0.12 -2.33 16 22 C -0.26 -8.95 6.07 -19.89 -0.12 -9.07 16 23 C 0.56 20.04 7.50 85.36 0.64 20.68 16 24 O -0.55 -20.49 16.66 -5.02 -0.08 -20.58 16 25 C -0.06 -1.24 6.83 31.03 0.21 -1.02 16 26 C -0.11 -1.37 7.15 31.48 0.23 -1.14 16 27 C -0.04 -0.51 6.81 30.87 0.21 -0.30 16 28 H 0.03 0.95 5.80 -2.38 -0.01 0.94 16 29 H 0.07 1.97 6.65 -2.39 -0.02 1.95 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.11 2.69 6.55 -2.39 -0.02 2.67 16 36 H 0.11 2.73 7.44 -2.39 -0.02 2.71 16 37 H 0.05 2.40 7.17 -2.39 -0.02 2.39 16 38 H 0.05 2.17 7.54 -2.40 -0.02 2.16 16 39 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 45 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -67.38 382.34 3.07 -64.31 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.96 Total: 11.15 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 5.58 Total: -10.12 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -3.06 Total: -95.02 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.08 Total: -20.58 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.05 kcal Atomic # 16 Polarization: 8.42 SS G_CDS: -2.22 Total: 6.20 kcal Total: -67.38 3.07 -64.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014118413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.714 kcal (2) G-P(sol) polarization free energy of solvation -67.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds