Wall clock time and date at job start Tue Mar 31 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38220 * 125.86728 * 2 1 4 4 C 1.47292 * 125.76145 * 359.97438 * 3 2 1 5 5 C 1.35033 * 125.27804 * 194.76963 * 4 3 2 6 6 C 1.37831 * 114.68129 * 179.79138 * 5 4 3 7 7 C 1.33695 * 115.08461 * 0.50002 * 6 5 4 8 8 S 1.75855 * 109.78342 * 359.73051 * 7 6 5 9 9 N 1.30608 * 108.46934 * 180.02562 * 3 2 1 10 10 N 1.40155 * 108.00923 * 0.02562 * 9 3 2 11 11 C 1.46497 * 126.22224 * 179.97438 * 10 9 3 12 12 N 1.46906 * 109.47451 * 90.02421 * 11 10 9 13 13 C 1.46891 * 110.99985 * 189.99919 * 12 11 10 14 14 C 1.50700 * 109.47118 * 173.82576 * 13 12 11 15 15 H 1.08007 * 119.99943 * 354.95896 * 14 13 12 16 16 C 1.37878 * 120.00445 * 174.96092 * 14 13 12 17 17 N 1.31519 * 120.00231 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99548 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47050 * 90.00367 * 18 16 14 20 20 H 1.48505 * 109.46709 * 210.00142 * 18 16 14 21 21 H 1.48494 * 109.47288 * 329.99679 * 18 16 14 22 22 C 1.46900 * 110.99890 * 66.04306 * 12 11 10 23 23 C 1.52996 * 109.47249 * 66.87804 * 22 12 11 24 24 C 1.47197 * 109.47613 * 184.25210 * 23 22 12 25 25 N 5.99798 * 96.45988 * 155.04515 * 2 1 3 26 26 C 1.34780 * 125.86268 * 180.02562 * 2 1 3 27 27 S 1.71200 * 126.15292 * 359.96435 * 26 2 1 28 28 H 1.09000 * 109.47658 * 269.99998 * 1 2 3 29 29 H 1.09005 * 109.47176 * 30.00543 * 1 2 3 30 30 H 1.09006 * 109.47299 * 149.99900 * 1 2 3 31 31 H 1.07999 * 122.65838 * 359.97156 * 5 4 3 32 32 H 1.07993 * 122.46086 * 180.20832 * 6 5 4 33 33 H 1.08003 * 125.10942 * 179.76193 * 7 6 5 34 34 H 1.08999 * 109.47014 * 210.02689 * 11 10 9 35 35 H 1.08999 * 109.46993 * 330.02230 * 11 10 9 36 36 H 1.08999 * 109.47232 * 293.82017 * 13 12 11 37 37 H 1.09002 * 109.47391 * 53.82450 * 13 12 11 38 38 H 0.96995 * 119.99826 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.47383 * 186.88125 * 22 12 11 40 40 H 1.09004 * 109.46969 * 306.88396 * 22 12 11 41 41 H 1.09003 * 109.47434 * 304.25973 * 23 22 12 42 42 H 1.09009 * 109.46885 * 64.25418 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2748 1.1201 0.0000 4 6 1.8106 2.5179 -0.0005 5 6 2.5765 3.5940 -0.2816 6 6 1.9158 4.8021 -0.2219 7 6 0.6240 4.7257 0.1143 8 16 0.1745 3.0453 0.3721 9 7 3.5211 0.7296 -0.0006 10 7 3.5361 -0.6719 -0.0015 11 6 4.7271 -1.5249 -0.0029 12 7 5.1259 -1.8115 1.3816 13 6 6.4424 -2.4616 1.4264 14 6 6.8846 -2.6022 2.8602 15 1 6.2905 -2.1724 3.6532 16 6 8.0477 -3.2794 3.1597 17 7 8.4338 -3.4017 4.4110 18 14 9.0748 -4.0233 1.7882 19 1 10.0699 -3.0261 1.3185 20 1 9.7817 -5.2265 2.2961 21 1 8.1896 -4.4087 0.6600 22 6 4.1123 -2.6276 2.0632 23 6 4.0610 -4.0164 1.4233 24 6 2.9768 -4.8000 2.0374 25 7 2.1398 -5.4035 2.5145 26 6 2.2546 -1.0923 -0.0005 27 16 1.7260 -2.7206 -0.0004 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 3.6231 3.5140 -0.5359 32 1 2.4067 5.7419 -0.4269 33 1 -0.0433 5.5693 0.2122 34 1 4.5040 -2.4595 -0.5176 35 1 5.5405 -1.0124 -0.5166 36 1 6.3761 -3.4484 0.9683 37 1 7.1657 -1.8555 0.8809 38 1 9.2518 -3.8784 4.6217 39 1 4.3712 -2.7228 3.1176 40 1 3.1375 -2.1486 1.9702 41 1 3.8766 -3.9170 0.3536 42 1 5.0119 -4.5250 1.5824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014162764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:04 Heat of formation + Delta-G solvation = 185.674466 kcal Electronic energy + Delta-G solvation = -27588.173579 eV Core-core repulsion = 23824.828360 eV Total energy + Delta-G solvation = -3763.345219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 363.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.79199 -38.47829 -38.10752 -35.84228 -35.22506 -33.31917 -32.50613 -30.66242 -29.94562 -28.60815 -27.52849 -25.96177 -24.94239 -23.61127 -22.82077 -22.27310 -20.13844 -19.63843 -18.70143 -17.59608 -17.33404 -17.21054 -16.81422 -16.45259 -16.10477 -15.70930 -15.29719 -14.77452 -14.35798 -14.17521 -13.93228 -13.83656 -13.54401 -13.38607 -13.28695 -13.23352 -12.70782 -12.57273 -12.33113 -12.00481 -11.87568 -11.73817 -11.54097 -11.36834 -11.34759 -11.23914 -11.09722 -10.89586 -10.70050 -10.56471 -10.07784 -10.03128 -9.44844 -9.23516 -9.09793 -8.67159 -7.82554 -7.63048 -7.41997 -6.14078 -4.14471 -0.06858 0.71190 1.00920 1.20219 1.31740 1.56678 2.14337 2.25655 2.34782 3.22344 3.28376 3.31893 3.47565 3.57467 3.79509 3.93604 4.31667 4.33759 4.38074 4.50096 4.75681 4.79130 4.88068 4.99349 5.01891 5.16052 5.16514 5.27266 5.32907 5.47797 5.58147 5.64146 5.76694 5.80430 5.86844 6.08150 6.16165 6.28039 6.58680 6.67483 6.80601 6.95972 7.28723 7.53194 7.67853 8.32247 8.48057 8.93869 9.44363 10.98431 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.003094 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.192502 B = 9048.657187 C =10654.116165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.495 5.495 3 C 0.330 3.670 4 C -0.153 4.153 5 C -0.063 4.063 6 C -0.138 4.138 7 C -0.196 4.196 8 S 0.155 5.845 9 N -0.238 5.238 10 N -0.350 5.350 11 C 0.293 3.707 12 N -0.529 5.529 13 C 0.161 3.839 14 C -0.515 4.515 15 H 0.083 0.917 16 C 0.074 3.926 17 N -0.893 5.893 18 Si 0.870 3.130 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.263 1.263 22 C 0.071 3.929 23 C -0.062 4.062 24 C 0.243 3.757 25 N -0.467 5.467 26 C 0.461 3.539 27 S -0.573 6.573 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.174 0.826 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.008 0.992 37 H 0.032 0.968 38 H 0.266 0.734 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.484 18.515 -14.013 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.196 5.196 3 C 0.052 3.948 4 C -0.273 4.273 5 C -0.099 4.099 6 C -0.168 4.168 7 C -0.333 4.333 8 S 0.419 5.581 9 N -0.059 5.059 10 N -0.143 5.143 11 C 0.083 3.917 12 N -0.253 5.253 13 C 0.036 3.964 14 C -0.553 4.553 15 H 0.101 0.899 16 C -0.129 4.129 17 N -0.531 5.531 18 Si 0.696 3.304 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.188 1.188 22 C -0.059 4.059 23 C -0.104 4.104 24 C -0.074 4.074 25 N -0.146 5.146 26 C 0.101 3.899 27 S -0.444 6.444 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.191 0.809 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.026 0.974 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.103 16.494 -12.528 26.861 hybrid contribution 1.812 0.550 -1.464 2.394 sum -15.291 17.043 -13.991 26.834 Atomic orbital electron populations 1.22334 0.72998 1.05950 1.05333 1.46108 1.09483 1.03577 1.60456 1.21271 0.86068 0.87694 0.99756 1.21323 0.99325 0.90492 1.16166 1.20499 1.01704 0.90027 0.97634 1.20137 0.93842 0.99249 1.03538 1.26110 1.00290 1.00114 1.06739 1.84334 1.06740 0.99760 1.67221 1.77745 1.14908 0.91798 1.21474 1.49664 1.05885 1.02399 1.56340 1.22540 0.82595 0.92054 0.94506 1.62202 1.04896 1.47485 1.10758 1.20313 0.83724 0.92486 0.99892 1.20867 1.08393 1.35507 0.90510 0.89915 1.24863 0.97125 0.95647 0.95274 1.69874 1.23762 1.42063 1.17407 0.86953 0.81143 0.79398 0.82862 1.20066 1.21079 1.18800 1.22169 0.94596 0.88694 1.00418 1.20120 0.92863 0.95963 1.01432 1.28802 0.93480 0.92655 0.92480 1.81079 1.11553 1.11291 1.10645 1.23958 0.83830 0.93944 0.88201 1.93549 1.83398 0.93731 1.73697 0.89124 0.89067 0.86530 0.82602 0.83017 0.80864 0.88886 0.86596 0.97449 0.95010 0.92433 0.88553 0.91544 0.87030 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 9.93 59.85 0.59 1.21 16 2 N -0.50 -5.87 3.16 -122.72 -0.39 -6.25 16 3 C 0.33 3.85 7.81 -153.94 -1.20 2.65 16 4 C -0.15 -1.34 6.32 -37.04 -0.23 -1.57 16 5 C -0.06 -0.47 10.06 -40.87 -0.41 -0.88 16 6 C -0.14 -0.73 10.16 -41.32 -0.42 -1.15 16 7 C -0.20 -0.90 11.23 29.14 0.33 -0.57 16 8 S 0.16 0.92 20.22 -107.50 -2.17 -1.26 16 9 N -0.24 -3.32 12.53 32.48 0.41 -2.91 16 10 N -0.35 -5.23 3.58 -65.02 -0.23 -5.47 16 11 C 0.29 4.43 5.84 -63.31 -0.37 4.06 16 12 N -0.53 -9.81 4.87 -239.99 -1.17 -10.98 16 13 C 0.16 3.34 3.43 -4.98 -0.02 3.33 16 14 C -0.51 -13.27 8.97 -34.44 -0.31 -13.58 16 15 H 0.08 2.39 7.28 -52.48 -0.38 2.01 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 17 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 18 Si 0.87 19.69 27.57 -169.99 -4.69 15.01 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.26 -5.51 6.40 56.52 0.36 -5.15 16 22 C 0.07 1.33 4.50 -3.83 -0.02 1.31 16 23 C -0.06 -1.09 4.00 -29.52 -0.12 -1.21 16 24 C 0.24 4.78 14.20 -20.73 -0.29 4.49 16 25 N -0.47 -10.00 18.54 42.19 0.78 -9.22 16 26 C 0.46 6.81 6.60 -86.83 -0.57 6.23 16 27 S -0.57 -9.70 23.71 -107.50 -2.55 -12.25 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.51 5.85 -51.82 -0.30 0.21 16 30 H 0.12 0.98 7.63 -51.93 -0.40 0.59 16 31 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 33 H 0.17 0.35 8.06 -52.48 -0.42 -0.07 16 34 H 0.09 1.33 5.74 -51.93 -0.30 1.03 16 35 H 0.12 1.56 7.98 -51.93 -0.41 1.15 16 36 H 0.01 0.16 4.92 -51.93 -0.26 -0.10 16 37 H 0.03 0.65 7.69 -51.93 -0.40 0.25 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.10 2.05 6.80 -51.93 -0.35 1.70 16 40 H 0.07 1.26 5.03 -51.93 -0.26 1.00 16 41 H 0.11 1.84 4.67 -51.93 -0.24 1.60 16 42 H 0.11 1.97 6.56 -51.92 -0.34 1.63 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -33.71 368.03 -11.35 -45.06 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.51 Total: 1.83 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -3.14 Total: 6.20 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.17 Total: -60.12 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.69 Total: 15.01 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -4.72 Total: -13.51 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.71 -11.35 -45.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014162764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.731 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds