Wall clock time and date at job start Tue Mar 31 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30560 * 1 3 3 Si 1.86807 * 120.00249 * 2 1 4 4 H 1.48503 * 109.47141 * 269.99932 * 3 2 1 5 5 H 1.48508 * 109.46883 * 29.99728 * 3 2 1 6 6 H 1.48495 * 109.47061 * 149.99539 * 3 2 1 7 7 C 1.40289 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99836 * 179.97438 * 7 2 1 9 9 C 1.39385 * 119.99768 * 0.02562 * 7 2 1 10 10 O 1.22131 * 120.00385 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99574 * 179.97438 * 9 7 2 12 12 N 1.28998 * 119.99992 * 180.02562 * 11 9 7 13 13 C 1.32740 * 120.00497 * 186.00468 * 12 11 9 14 14 C 1.38977 * 119.99593 * 9.84067 * 13 12 11 15 15 C 1.41864 * 125.97254 * 186.36717 * 14 13 12 16 16 C 1.36235 * 107.00240 * 179.86664 * 15 14 13 17 17 C 1.40812 * 107.29466 * 0.39408 * 16 15 14 18 18 C 1.46366 * 125.72356 * 179.72826 * 17 16 15 19 19 C 1.40565 * 120.19837 * 359.97438 * 18 17 16 20 20 C 1.36557 * 119.90578 * 179.97438 * 19 18 17 21 21 C 1.38833 * 120.34005 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 119.79177 * 179.97438 * 21 20 19 23 23 C 1.38826 * 120.41426 * 0.02562 * 21 20 19 24 24 N 1.48013 * 119.95996 * 180.02562 * 23 21 20 25 25 O 1.31697 * 120.00374 * 180.02562 * 24 23 21 26 26 O 1.31702 * 119.99992 * 359.97438 * 24 23 21 27 27 C 1.37623 * 120.07964 * 359.74102 * 23 21 20 28 28 O 1.34518 * 108.56271 * 359.74143 * 17 16 15 29 29 H 0.97000 * 119.99956 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00553 * 359.72538 * 11 9 7 31 31 H 1.07993 * 119.99927 * 189.83944 * 13 12 11 32 32 H 1.08007 * 126.49350 * 0.02562 * 15 14 13 33 33 H 1.08006 * 126.35066 * 180.13584 * 16 15 14 34 34 H 1.07997 * 120.04543 * 359.95832 * 19 18 17 35 35 H 1.08007 * 119.82923 * 179.97438 * 20 19 18 36 36 H 1.08004 * 120.16429 * 180.27572 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 2.4872 2.0464 -1.4001 5 1 1.4371 2.6528 0.7000 6 1 3.5372 1.4402 0.7001 7 6 2.0070 -1.2149 0.0005 8 1 3.0871 -1.2149 0.0001 9 6 1.3101 -2.4220 0.0005 10 8 0.0887 -2.4220 0.0005 11 7 1.9840 -3.5892 0.0005 12 7 1.3390 -4.7063 0.0000 13 6 1.9971 -5.8528 0.1203 14 6 3.3471 -5.8477 0.4504 15 6 4.2002 -6.9806 0.4876 16 6 5.4356 -6.5372 0.8527 17 6 5.3404 -5.1458 1.0470 18 6 6.4349 -4.2628 1.4528 19 6 7.7179 -4.7878 1.6851 20 6 8.7348 -3.9584 2.0630 21 6 8.5087 -2.5976 2.2188 22 17 9.8116 -1.5563 2.7004 23 6 7.2469 -2.0644 1.9930 24 7 7.0172 -0.6119 2.1616 25 8 5.8205 -0.1053 1.9482 26 8 8.0094 0.1737 2.5262 27 6 6.2108 -2.8838 1.6070 28 8 4.0749 -4.7641 0.7975 29 1 -0.4850 0.8400 -0.0004 30 1 2.9540 -3.5892 -0.0035 31 1 1.4835 -6.7895 -0.0384 32 1 3.9233 -8.0007 0.2658 33 1 6.3223 -7.1416 0.9748 34 1 7.8991 -5.8457 1.5651 35 1 9.7201 -4.3633 2.2415 36 1 5.2297 -2.4698 1.4266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016385963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:24 Heat of formation + Delta-G solvation = 87.953672 kcal Electronic energy + Delta-G solvation = -29218.533029 eV Core-core repulsion = 24702.194801 eV Total energy + Delta-G solvation = -4516.338228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.050 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -42.58281 -40.41233 -39.14613 -38.34547 -37.08342 -36.06646 -34.36557 -33.61540 -32.99982 -32.61202 -32.23375 -31.08313 -28.47702 -26.90591 -26.74478 -24.53895 -23.27187 -22.30208 -21.60004 -20.99614 -20.22897 -18.87754 -18.15260 -18.04990 -17.24325 -17.16650 -16.33851 -16.10957 -16.05904 -15.92559 -15.75027 -14.72561 -14.44309 -14.16825 -13.95065 -13.76183 -13.53656 -13.32197 -13.20940 -12.82417 -12.47312 -12.41087 -12.24617 -12.13853 -11.67469 -11.48413 -11.17410 -11.01826 -10.85447 -10.59606 -10.44944 -10.36041 -10.34871 -10.15099 -10.01826 -9.83730 -9.11573 -8.60977 -8.05720 -6.94026 -6.58997 -5.18236 -0.88164 -0.08374 0.75912 0.92224 1.13872 1.45591 2.12738 2.54679 2.95093 3.02667 3.14644 3.16057 3.27446 3.74113 3.84109 3.99921 4.15087 4.20459 4.27005 4.30765 4.48393 4.60058 4.84197 5.00905 5.07464 5.26220 5.40264 5.49135 5.50703 5.55763 5.60955 5.76052 5.88608 6.04900 6.35589 6.45482 6.70771 6.86847 7.04247 7.55366 7.75234 8.54293 8.57148 8.98485 10.16913 10.35523 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.007615 B = 0.004373 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3676.023110 B = 6401.106559 C =10001.888459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.241 1.241 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.526 3.474 10 O -0.540 6.540 11 N -0.491 5.491 12 N -0.129 5.129 13 C -0.067 4.067 14 C 0.065 3.935 15 C -0.213 4.213 16 C -0.130 4.130 17 C -0.057 4.057 18 C 0.024 3.976 19 C -0.053 4.053 20 C -0.099 4.099 21 C -0.001 4.001 22 Cl -0.006 7.006 23 C 0.018 3.982 24 N -0.030 5.030 25 O -0.147 6.147 26 O -0.149 6.149 27 C -0.047 4.047 28 O -0.159 6.159 29 H 0.280 0.720 30 H 0.371 0.629 31 H 0.190 0.810 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.819 -12.091 3.250 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.163 1.163 7 C -0.550 4.550 8 H 0.094 0.906 9 C 0.339 3.661 10 O -0.420 6.420 11 N -0.245 5.245 12 N 0.040 4.960 13 C -0.258 4.258 14 C 0.010 3.990 15 C -0.237 4.237 16 C -0.150 4.150 17 C -0.109 4.109 18 C 0.022 3.978 19 C -0.072 4.072 20 C -0.118 4.118 21 C -0.030 4.030 22 Cl 0.024 6.976 23 C -0.069 4.069 24 N 0.452 4.548 25 O -0.341 6.341 26 O -0.346 6.346 27 C -0.066 4.066 28 O -0.052 6.052 29 H 0.091 0.909 30 H 0.215 0.785 31 H 0.207 0.793 32 H 0.176 0.824 33 H 0.172 0.828 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 17.976 -11.639 3.135 21.643 hybrid contribution 1.723 0.853 0.204 1.933 sum 19.699 -10.786 3.339 22.706 Atomic orbital electron populations 1.69972 1.07645 1.28862 1.29110 1.25800 0.94721 1.01092 0.92123 0.86295 0.81577 0.79636 0.79663 1.19267 1.19832 1.16321 1.19622 0.95027 0.89689 1.50627 0.90558 1.16805 0.88170 0.80377 0.80753 1.90816 1.12839 1.84703 1.53658 1.46422 1.09523 1.04286 1.64293 1.72161 1.30415 0.93314 1.00069 1.22655 0.87137 0.97146 1.18898 1.21549 0.93000 0.84296 1.00143 1.21878 0.92579 0.99023 1.10203 1.21623 0.99189 0.91999 1.02140 1.20636 0.82749 0.92637 1.14867 1.17747 0.91384 0.89985 0.98638 1.21279 0.89935 1.01336 0.94637 1.20755 1.01376 0.89320 1.00397 1.21066 0.88501 0.93152 1.00296 1.98468 1.45410 1.65181 1.88556 1.19903 0.95156 0.79438 1.12398 1.50363 1.03090 1.03553 0.97825 1.96427 1.03832 1.79243 1.54589 1.96301 1.31798 1.57692 1.48808 1.21448 0.99685 0.92041 0.93436 1.84043 1.19960 1.35211 1.66024 0.90940 0.78526 0.79329 0.82398 0.82840 0.82585 0.82134 0.81168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.77 11.68 55.56 0.65 -20.12 16 2 C 0.09 2.37 5.50 -17.32 -0.10 2.27 16 3 Si 0.91 19.60 29.56 -169.99 -5.03 14.57 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.24 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.51 -13.94 9.20 -38.38 -0.35 -14.30 16 8 H 0.08 1.88 7.85 -52.49 -0.41 1.47 16 9 C 0.53 14.84 7.57 -15.83 -0.12 14.72 16 10 O -0.54 -17.40 15.14 4.80 0.07 -17.33 16 11 N -0.49 -11.53 5.61 28.66 0.16 -11.37 16 12 N -0.13 -2.80 10.73 30.76 0.33 -2.47 16 13 C -0.07 -1.08 11.23 -16.89 -0.19 -1.27 16 14 C 0.06 0.95 6.68 -37.92 -0.25 0.70 16 15 C -0.21 -2.33 10.86 -38.92 -0.42 -2.75 16 16 C -0.13 -1.28 10.22 -39.33 -0.40 -1.68 16 17 C -0.06 -0.71 7.09 -35.34 -0.25 -0.96 16 18 C 0.02 0.26 5.89 -104.88 -0.62 -0.36 16 19 C -0.05 -0.38 9.54 -39.31 -0.37 -0.75 16 20 C -0.10 -0.70 9.76 -39.97 -0.39 -1.09 16 21 C 0.00 -0.01 6.35 -39.14 -0.25 -0.26 16 22 Cl -0.01 -0.06 25.75 -51.86 -1.34 -1.40 16 23 C 0.02 0.24 6.88 -79.96 -0.55 -0.31 16 24 N -0.03 -0.51 4.98 33.96 0.17 -0.34 16 25 O -0.15 -2.89 19.15 -31.57 -0.60 -3.49 16 26 O -0.15 -2.49 16.58 -31.57 -0.52 -3.01 16 27 C -0.05 -0.63 9.27 -38.93 -0.36 -0.99 16 28 O -0.16 -2.53 7.35 2.99 0.02 -2.51 16 29 H 0.28 7.12 8.29 -40.82 -0.34 6.78 16 30 H 0.37 7.77 5.13 -190.13 -0.98 6.79 16 31 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 32 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 33 H 0.15 0.89 7.29 -52.48 -0.38 0.51 16 34 H 0.16 0.55 6.99 -52.49 -0.37 0.18 16 35 H 0.16 0.58 8.06 -52.48 -0.42 0.16 16 36 H 0.17 2.63 7.42 -52.48 -0.39 2.24 16 LS Contribution 351.02 15.07 5.29 5.29 Total: -1.00 -35.41 351.02 -8.35 -43.77 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -2.93 Total: 5.42 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -4.63 Total: -7.01 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 1.31 Total: -34.30 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -1.03 Total: -26.34 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.34 Total: -1.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.41 -8.35 -43.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016385963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.720 kcal (2) G-P(sol) polarization free energy of solvation -35.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds