Wall clock time and date at job start Tue Mar 31 2020 05:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30560 * 1 3 3 Si 1.86807 * 120.00249 * 2 1 4 4 H 1.48503 * 109.47141 * 269.99932 * 3 2 1 5 5 H 1.48508 * 109.46883 * 29.99728 * 3 2 1 6 6 H 1.48495 * 109.47061 * 149.99539 * 3 2 1 7 7 C 1.40289 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99836 * 179.97438 * 7 2 1 9 9 C 1.39385 * 119.99768 * 0.02562 * 7 2 1 10 10 O 1.22131 * 120.00385 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99574 * 179.97438 * 9 7 2 12 12 N 1.28998 * 119.99992 * 180.02562 * 11 9 7 13 13 C 1.32740 * 120.00497 * 186.00468 * 12 11 9 14 14 C 1.38977 * 119.99593 * 9.84067 * 13 12 11 15 15 C 1.41864 * 125.97254 * 186.36717 * 14 13 12 16 16 C 1.36235 * 107.00240 * 179.86664 * 15 14 13 17 17 C 1.40812 * 107.29466 * 0.39408 * 16 15 14 18 18 C 1.46366 * 125.72356 * 179.72826 * 17 16 15 19 19 C 1.40565 * 120.19837 * 359.97438 * 18 17 16 20 20 C 1.36557 * 119.90578 * 179.97438 * 19 18 17 21 21 C 1.38833 * 120.34005 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 119.79177 * 179.97438 * 21 20 19 23 23 C 1.38826 * 120.41426 * 0.02562 * 21 20 19 24 24 N 1.48013 * 119.95996 * 180.02562 * 23 21 20 25 25 O 1.31697 * 120.00374 * 180.02562 * 24 23 21 26 26 O 1.31702 * 119.99992 * 359.97438 * 24 23 21 27 27 C 1.37623 * 120.07964 * 359.74102 * 23 21 20 28 28 O 1.34518 * 108.56271 * 359.74143 * 17 16 15 29 29 H 0.97000 * 119.99956 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00553 * 359.72538 * 11 9 7 31 31 H 1.07993 * 119.99927 * 189.83944 * 13 12 11 32 32 H 1.08007 * 126.49350 * 0.02562 * 15 14 13 33 33 H 1.08006 * 126.35066 * 180.13584 * 16 15 14 34 34 H 1.07997 * 120.04543 * 359.95832 * 19 18 17 35 35 H 1.08007 * 119.82923 * 179.97438 * 20 19 18 36 36 H 1.08004 * 120.16429 * 180.27572 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 2.4872 2.0464 -1.4001 5 1 1.4371 2.6528 0.7000 6 1 3.5372 1.4402 0.7001 7 6 2.0070 -1.2149 0.0005 8 1 3.0871 -1.2149 0.0001 9 6 1.3101 -2.4220 0.0005 10 8 0.0887 -2.4220 0.0005 11 7 1.9840 -3.5892 0.0005 12 7 1.3390 -4.7063 0.0000 13 6 1.9971 -5.8528 0.1203 14 6 3.3471 -5.8477 0.4504 15 6 4.2002 -6.9806 0.4876 16 6 5.4356 -6.5372 0.8527 17 6 5.3404 -5.1458 1.0470 18 6 6.4349 -4.2628 1.4528 19 6 7.7179 -4.7878 1.6851 20 6 8.7348 -3.9584 2.0630 21 6 8.5087 -2.5976 2.2188 22 17 9.8116 -1.5563 2.7004 23 6 7.2469 -2.0644 1.9930 24 7 7.0172 -0.6119 2.1616 25 8 5.8205 -0.1053 1.9482 26 8 8.0094 0.1737 2.5262 27 6 6.2108 -2.8838 1.6070 28 8 4.0749 -4.7641 0.7975 29 1 -0.4850 0.8400 -0.0004 30 1 2.9540 -3.5892 -0.0035 31 1 1.4835 -6.7895 -0.0384 32 1 3.9233 -8.0007 0.2658 33 1 6.3223 -7.1416 0.9748 34 1 7.8991 -5.8457 1.5651 35 1 9.7201 -4.3633 2.2415 36 1 5.2297 -2.4698 1.4266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016385963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:23 Heat of formation + Delta-G solvation = 62.209007 kcal Electronic energy + Delta-G solvation = -29219.649402 eV Core-core repulsion = 24702.194801 eV Total energy + Delta-G solvation = -4517.454601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.050 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.63751 -41.40731 -40.73601 -39.51651 -38.01046 -37.83782 -35.68468 -34.92399 -34.61614 -33.87586 -33.12251 -32.47576 -29.95875 -28.47167 -27.95170 -25.71814 -24.22072 -23.59582 -22.65871 -22.19665 -21.66437 -20.05040 -19.76476 -19.26788 -18.63322 -18.03756 -17.87393 -17.43897 -17.25974 -17.13822 -16.82349 -16.16880 -15.84618 -15.51656 -15.07532 -14.92527 -14.88195 -14.40351 -14.20116 -14.08262 -13.54028 -13.43247 -13.38011 -13.25569 -13.17426 -13.08026 -12.90939 -12.77509 -12.47049 -12.12104 -11.99404 -11.55235 -11.40894 -11.25202 -11.11867 -10.99146 -10.80352 -10.19867 -9.85476 -8.60902 -8.30698 -7.28104 -2.07191 -1.07038 -0.19489 -0.18633 0.05546 0.57500 1.17513 1.29481 1.33427 1.50745 1.59363 1.90029 2.09998 2.11785 2.34136 2.55340 2.83391 3.01979 3.43526 3.45668 3.48124 3.60789 3.76497 3.90181 4.07982 4.20431 4.40532 4.45802 4.49649 4.67439 4.80105 4.85946 4.97128 5.01079 5.07766 5.21515 5.36806 5.55288 5.64778 5.74534 6.00701 6.50862 6.77408 7.38596 8.23662 8.41593 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.007615 B = 0.004373 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3676.023110 B = 6401.106559 C =10001.888459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.044 3.956 3 Si 0.983 3.017 4 H -0.251 1.251 5 H -0.258 1.258 6 H -0.252 1.252 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.527 3.473 10 O -0.602 6.602 11 N -0.524 5.524 12 N -0.237 5.237 13 C 0.017 3.983 14 C -0.026 4.026 15 C -0.149 4.149 16 C -0.123 4.123 17 C -0.046 4.046 18 C 0.005 3.995 19 C -0.004 4.004 20 C -0.079 4.079 21 C 0.008 3.992 22 Cl 0.000 7.000 23 C -0.010 4.010 24 N -0.023 5.023 25 O -0.256 6.256 26 O -0.114 6.114 27 C -0.066 4.066 28 O -0.194 6.194 29 H 0.288 0.712 30 H 0.376 0.624 31 H 0.232 0.768 32 H 0.202 0.798 33 H 0.216 0.784 34 H 0.218 0.782 35 H 0.216 0.784 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.293 -17.270 3.918 31.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.177 4.177 3 Si 0.801 3.199 4 H -0.175 1.175 5 H -0.182 1.182 6 H -0.175 1.175 7 C -0.582 4.582 8 H 0.100 0.900 9 C 0.340 3.660 10 O -0.488 6.488 11 N -0.275 5.275 12 N -0.058 5.058 13 C -0.182 4.182 14 C -0.079 4.079 15 C -0.173 4.173 16 C -0.141 4.141 17 C -0.099 4.099 18 C 0.003 3.997 19 C -0.022 4.022 20 C -0.097 4.097 21 C -0.021 4.021 22 Cl 0.030 6.970 23 C -0.098 4.098 24 N 0.451 4.549 25 O -0.426 6.426 26 O -0.327 6.327 27 C -0.086 4.086 28 O -0.089 6.089 29 H 0.098 0.902 30 H 0.221 0.779 31 H 0.248 0.752 32 H 0.219 0.781 33 H 0.232 0.768 34 H 0.235 0.765 35 H 0.233 0.767 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 24.215 -16.805 3.735 29.711 hybrid contribution 0.526 1.804 0.201 1.890 sum 24.741 -15.000 3.936 29.200 Atomic orbital electron populations 1.70089 1.09536 1.30261 1.30861 1.26881 0.95418 1.04633 0.90786 0.85202 0.79395 0.75001 0.80333 1.17516 1.18190 1.17492 1.19989 0.95418 0.90717 1.52042 0.90033 1.16883 0.87538 0.82228 0.79357 1.90717 1.14989 1.86567 1.56530 1.45164 1.08869 1.03750 1.69759 1.72071 1.31882 0.93924 1.07926 1.23660 0.88165 0.96925 1.09407 1.21739 0.93642 0.85727 1.06765 1.22572 0.91722 0.99296 1.03688 1.22324 1.00811 0.90246 1.00715 1.21564 0.81854 0.94648 1.11787 1.18062 0.93271 0.88343 1.00003 1.22002 0.86903 1.03971 0.89300 1.21466 1.03652 0.86928 0.97687 1.21522 0.86944 0.94835 0.98790 1.98483 1.44644 1.65674 1.88214 1.20167 0.96924 0.77215 1.15448 1.50776 1.02381 1.05111 0.96584 1.96459 1.04880 1.80400 1.60830 1.96228 1.31353 1.59035 1.46079 1.21284 0.98316 0.93935 0.95017 1.84035 1.21652 1.36902 1.66313 0.90180 0.77944 0.75231 0.78055 0.76769 0.76485 0.76736 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -48.58 11.68 21.88 0.26 -48.32 16 2 C 0.04 2.59 5.50 85.38 0.47 3.06 16 3 Si 0.98 44.27 29.56 68.60 2.03 46.30 16 4 H -0.25 -10.53 7.11 99.48 0.71 -9.83 16 5 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.25 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.55 -33.22 9.20 23.05 0.21 -33.00 16 8 H 0.08 4.62 7.85 -2.91 -0.02 4.60 16 9 C 0.53 33.40 7.57 84.52 0.64 34.03 16 10 O -0.60 -43.23 15.14 -5.75 -0.09 -43.31 16 11 N -0.52 -27.55 5.61 -181.26 -1.02 -28.57 16 12 N -0.24 -11.23 10.73 -56.58 -0.61 -11.84 16 13 C 0.02 0.54 11.23 84.73 0.95 1.49 16 14 C -0.03 -0.74 6.68 23.34 0.16 -0.58 16 15 C -0.15 -2.30 10.86 22.70 0.25 -2.06 16 16 C -0.12 -1.46 10.22 22.43 0.23 -1.23 16 17 C -0.05 -0.98 7.09 25.02 0.18 -0.80 16 18 C 0.00 0.08 5.89 -20.03 -0.12 -0.03 16 19 C 0.00 -0.02 9.54 22.44 0.21 0.19 16 20 C -0.08 -0.52 9.76 22.02 0.21 -0.31 16 21 C 0.01 0.14 6.35 22.55 0.14 0.29 16 22 Cl 0.00 0.00 25.75 -2.72 -0.07 -0.07 16 23 C -0.01 -0.27 6.88 36.37 0.25 -0.02 16 24 N -0.02 -0.84 4.98 -46.48 -0.23 -1.07 16 25 O -0.26 -11.53 19.15 3.52 0.07 -11.46 16 26 O -0.11 -3.83 16.58 3.51 0.06 -3.77 16 27 C -0.07 -1.84 9.27 22.69 0.21 -1.63 16 28 O -0.19 -6.27 7.35 -12.22 -0.09 -6.36 16 29 H 0.29 15.90 8.29 -92.71 -0.77 15.13 16 30 H 0.38 17.81 5.13 -219.84 -1.13 16.68 16 31 H 0.23 4.94 8.06 -2.91 -0.02 4.92 16 32 H 0.20 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.22 -0.04 7.29 -2.91 -0.02 -0.06 16 34 H 0.22 -1.11 6.99 -2.91 -0.02 -1.13 16 35 H 0.22 -0.63 8.06 -2.91 -0.02 -0.65 16 36 H 0.13 4.70 7.42 -2.91 -0.02 4.68 16 Total: -1.00 -98.80 351.02 4.37 -94.43 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.07 Total: 14.64 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 4.00 Total: -0.59 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -1.60 Total: -89.80 kcal Atomic # 8 Polarization: -64.85 SS G_CDS: -0.05 Total: -64.90 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.07 Total: -0.07 kcal Total: -98.80 4.37 -94.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016385963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.639 kcal (2) G-P(sol) polarization free energy of solvation -98.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds