Wall clock time and date at job start Tue Mar 31 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 116.99662 * 2 1 4 4 C 1.38862 * 119.89801 * 179.97438 * 3 2 1 5 5 C 1.37848 * 120.09386 * 179.97438 * 4 3 2 6 6 C 1.39686 * 119.90558 * 0.02562 * 5 4 3 7 7 N 1.36851 * 120.10343 * 180.02562 * 6 5 4 8 8 C 1.30372 * 120.00828 * 126.65827 * 7 6 5 9 9 C 1.47046 * 119.99592 * 339.83918 * 8 7 6 10 10 C 1.39955 * 120.09109 * 349.51235 * 9 8 7 11 11 C 1.37617 * 119.90740 * 180.27538 * 10 9 8 12 12 C 1.39190 * 120.09393 * 0.02562 * 11 10 9 13 13 N 1.39231 * 119.91035 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00157 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46942 * 89.99426 * 14 13 12 16 16 H 1.07990 * 120.00328 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99189 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00547 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99526 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47221 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47265 * 119.99860 * 19 17 15 22 22 H 1.48498 * 109.47242 * 240.00058 * 19 17 15 23 23 C 1.46501 * 119.99789 * 0.02562 * 13 12 11 24 24 C 1.53004 * 109.46879 * 90.00600 * 23 13 12 25 25 C 1.47197 * 109.47027 * 179.97438 * 24 23 13 26 26 N 6.36417 * 73.22885 * 266.71080 * 2 1 3 27 27 C 1.39187 * 120.18044 * 359.97438 * 12 11 10 28 28 C 1.37618 * 120.09377 * 359.97438 * 27 12 11 29 29 C 1.39697 * 119.80270 * 0.27050 * 6 5 4 30 30 C 1.37847 * 119.89428 * 359.47457 * 29 6 5 31 31 H 1.09002 * 109.47104 * 60.00740 * 1 2 3 32 32 H 1.09005 * 109.46777 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47942 * 300.00298 * 1 2 3 34 34 H 1.07997 * 119.95360 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.04464 * 179.97438 * 5 4 3 36 36 H 1.07994 * 120.00616 * 159.83691 * 8 7 6 37 37 H 1.07996 * 120.04133 * 0.25856 * 10 9 8 38 38 H 1.08002 * 119.95471 * 180.02562 * 11 10 9 39 39 H 1.08993 * 109.47012 * 209.99953 * 14 13 12 40 40 H 1.09001 * 109.46991 * 329.99678 * 14 13 12 41 41 H 0.96996 * 119.99973 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.47054 * 210.00267 * 23 13 12 43 43 H 1.09001 * 109.47168 * 330.00683 * 23 13 12 44 44 H 1.09006 * 109.46713 * 299.99981 * 24 23 13 45 45 H 1.08998 * 109.47128 * 59.99297 * 24 23 13 46 46 H 1.08005 * 119.95244 * 179.97438 * 27 12 11 47 47 H 1.07995 * 120.05042 * 180.02562 * 28 27 12 48 48 H 1.07997 * 120.05225 * 179.72373 * 29 6 5 49 49 H 1.08005 * 119.94692 * 180.22623 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4327 1.2812 0.0005 5 6 4.0627 2.5073 0.0000 6 6 3.3039 3.6801 -0.0005 7 7 3.9251 4.8995 -0.0016 8 6 3.6201 5.7858 -0.9078 9 6 2.9737 5.3649 -2.1596 10 6 2.8825 4.0055 -2.4796 11 6 2.2818 3.6160 -3.6549 12 6 1.7657 4.5719 -4.5251 13 7 1.1592 4.1736 -5.7134 14 6 0.6158 5.1781 -6.6310 15 6 1.6836 5.5943 -7.6097 16 1 2.6682 5.1544 -7.5540 17 6 1.4031 6.5369 -8.5761 18 7 0.2041 7.0731 -8.6436 19 14 2.7264 7.0524 -9.7896 20 1 3.9785 6.3073 -9.5028 21 1 2.2755 6.7499 -11.1718 22 1 2.9774 8.5101 -9.6587 23 6 1.0644 2.7501 -6.0461 24 6 -0.2418 2.1817 -5.4878 25 6 -0.3374 0.7515 -5.8226 26 7 -0.4074 -0.3496 -6.0834 27 6 1.8542 5.9249 -4.2106 28 6 2.4525 6.3228 -3.0369 29 6 1.9090 3.6046 0.0052 30 6 1.2875 2.3742 0.0004 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3635 0.5138 0.8899 34 1 4.0186 0.3740 0.0014 35 1 5.1413 2.5611 0.0008 36 1 3.8422 6.8292 -0.7391 37 1 3.2834 3.2632 -1.8053 38 1 2.2107 2.5671 -3.9025 39 1 -0.2295 4.7550 -7.1736 40 1 0.2845 6.0475 -6.0632 41 1 0.0070 7.7364 -9.3232 42 1 1.0800 2.6283 -7.1291 43 1 1.9088 2.2176 -5.6083 44 1 -0.2574 2.3036 -4.4047 45 1 -1.0862 2.7143 -5.9255 46 1 1.4529 6.6636 -4.8887 47 1 2.5204 7.3727 -2.7933 48 1 1.3184 4.5088 0.0093 49 1 0.2091 2.3148 0.0011 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017187268.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:48 Heat of formation + Delta-G solvation = 89.061384 kcal Electronic energy + Delta-G solvation = -31953.832418 eV Core-core repulsion = 27847.474357 eV Total energy + Delta-G solvation = -4106.358061 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.68949 -39.42643 -38.40747 -36.95805 -36.08662 -34.90008 -33.08294 -31.56834 -31.17487 -30.79020 -29.62088 -28.81221 -27.40512 -26.79210 -24.36780 -23.92636 -22.78240 -22.38640 -21.65227 -20.52682 -19.67142 -18.23422 -17.66205 -17.23623 -16.60717 -16.36081 -16.18965 -15.84898 -15.64480 -15.07144 -14.89173 -14.67063 -14.27477 -14.06026 -14.03246 -13.92921 -13.59396 -13.46171 -13.26771 -12.95465 -12.66154 -12.52897 -12.42133 -12.33771 -12.24771 -12.12978 -11.97535 -11.73582 -11.54469 -11.30476 -11.17869 -11.05357 -10.85819 -10.76638 -10.63039 -10.40462 -10.06491 -9.91953 -9.74717 -9.17894 -8.96370 -8.65335 -8.53130 -7.53545 -6.70697 -6.21088 -4.33236 0.83328 1.25580 1.57361 1.92748 2.66163 2.78688 2.82810 3.16990 3.18452 3.26463 3.30164 3.61116 3.70803 4.19668 4.30228 4.36101 4.51442 4.72324 4.78495 4.93534 4.96418 4.99068 5.03024 5.07672 5.16763 5.19171 5.23223 5.29215 5.33447 5.42151 5.48442 5.55653 5.71886 5.72853 5.80071 5.91081 5.99523 6.04412 6.12257 6.26069 6.29997 6.38416 6.45023 6.61561 6.68536 6.75613 6.92437 6.95764 7.11510 7.28088 7.29292 7.57111 7.64920 7.89841 7.97870 8.00671 8.12071 8.75022 9.34903 10.80298 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.009215 B = 0.003168 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.756334 B = 8835.512050 C =11107.577825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.100 3.900 4 C -0.132 4.132 5 C -0.108 4.108 6 C 0.090 3.910 7 N -0.526 5.526 8 C 0.244 3.756 9 C -0.228 4.228 10 C -0.047 4.047 11 C -0.226 4.226 12 C 0.266 3.734 13 N -0.596 5.596 14 C 0.245 3.755 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.127 3.873 24 C -0.051 4.051 25 C 0.217 3.783 26 N -0.445 5.445 27 C -0.195 4.195 28 C -0.029 4.029 29 C -0.105 4.105 30 C -0.180 4.180 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.158 0.842 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.035 0.965 40 H 0.041 0.959 41 H 0.265 0.735 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.139 0.861 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -5.621 15.814 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.055 3.945 4 C -0.151 4.151 5 C -0.127 4.127 6 C -0.010 4.010 7 N -0.230 5.230 8 C 0.045 3.955 9 C -0.234 4.234 10 C -0.067 4.067 11 C -0.249 4.249 12 C 0.156 3.844 13 N -0.298 5.298 14 C 0.126 3.874 15 C -0.575 4.575 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 C 0.001 3.999 24 C -0.092 4.092 25 C -0.101 4.101 26 N -0.123 5.123 27 C -0.218 4.218 28 C -0.050 4.050 29 C -0.125 4.125 30 C -0.199 4.199 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.175 0.825 37 H 0.151 0.849 38 H 0.134 0.866 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.125 0.875 45 H 0.132 0.868 46 H 0.157 0.843 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.550 -7.548 15.900 17.610 hybrid contribution -0.086 0.822 -1.412 1.636 sum 0.465 -6.727 14.488 15.980 Atomic orbital electron populations 1.23023 0.78622 1.03731 1.01339 1.86045 1.21158 1.27008 1.89104 1.18977 0.92208 0.84075 0.99245 1.20247 0.91313 0.98252 1.05284 1.20827 0.99874 0.90132 1.01913 1.18592 0.91622 0.91073 0.99711 1.68575 1.22018 1.02716 1.29723 1.24939 0.85219 0.97373 0.87948 1.19459 1.11648 0.93912 0.98335 1.21775 0.94129 0.95351 0.95439 1.20524 1.09195 0.98380 0.96792 1.18173 0.88042 0.93066 0.85085 1.47202 1.58864 1.05246 1.18537 1.19448 0.94196 0.86361 0.87428 1.21548 0.98301 1.23389 1.14254 0.92009 1.24929 0.95585 0.95829 0.97454 1.69916 1.19964 1.28406 1.34758 0.86480 0.81874 0.78554 0.80824 1.19675 1.20923 1.20784 1.21202 0.94442 0.82616 1.01634 1.19904 1.02840 0.82565 1.03928 1.29048 0.93076 0.94985 0.93031 1.81106 1.08835 1.13070 1.09259 1.20867 1.07073 0.94715 0.99107 1.21012 0.93464 0.98224 0.92323 1.21226 0.93044 0.97640 1.00624 1.21040 0.99880 0.91916 1.07096 0.92599 0.88484 0.92805 0.85189 0.85145 0.82481 0.84901 0.86583 0.94661 0.94075 0.92541 0.89182 0.90647 0.87501 0.86826 0.84344 0.86072 0.85761 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.69 10.49 -19.42 -0.20 -3.89 16 3 C 0.10 1.21 6.69 -39.12 -0.26 0.94 16 4 C -0.13 -1.57 9.93 -39.49 -0.39 -1.96 16 5 C -0.11 -1.34 8.64 -39.18 -0.34 -1.67 16 6 C 0.09 1.19 3.65 -84.54 -0.31 0.88 16 7 N -0.53 -7.00 10.47 -9.05 -0.09 -7.10 16 8 C 0.24 2.87 10.78 -14.60 -0.16 2.72 16 9 C -0.23 -3.05 5.35 -105.04 -0.56 -3.61 16 10 C -0.05 -0.66 7.42 -39.17 -0.29 -0.96 16 11 C -0.23 -3.31 9.18 -39.45 -0.36 -3.68 16 12 C 0.27 4.31 6.55 -83.79 -0.55 3.76 16 13 N -0.60 -9.98 2.58 -173.09 -0.45 -10.42 16 14 C 0.24 5.08 4.90 -5.19 -0.03 5.06 16 15 C -0.54 -12.91 9.39 -34.44 -0.32 -13.24 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -23.32 13.29 55.43 0.74 -22.59 16 19 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.13 1.75 5.10 -4.04 -0.02 1.73 16 24 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 25 C 0.22 2.78 15.43 -20.83 -0.32 2.46 16 26 N -0.45 -6.83 18.52 42.07 0.78 -6.05 16 27 C -0.20 -3.17 9.18 -39.46 -0.36 -3.53 16 28 C -0.03 -0.39 9.78 -39.16 -0.38 -0.78 16 29 C -0.11 -1.30 7.11 -39.18 -0.28 -1.58 16 30 C -0.18 -2.06 9.02 -39.49 -0.36 -2.41 16 31 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.88 3.39 -52.49 -0.18 1.71 16 38 H 0.12 1.57 6.11 -52.49 -0.32 1.25 16 39 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 40 H 0.04 0.91 6.17 -51.93 -0.32 0.59 16 41 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 42 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 43 H 0.08 0.97 6.17 -51.93 -0.32 0.65 16 44 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.14 2.51 6.11 -52.48 -0.32 2.18 16 47 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 48 H 0.12 1.48 7.97 -52.49 -0.42 1.06 16 49 H 0.13 1.20 6.28 -52.48 -0.33 0.88 16 LS Contribution 412.03 15.07 6.21 6.21 Total: -1.00 -28.91 412.03 -8.96 -37.88 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.35 Total: 5.02 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -4.58 Total: -13.85 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.97 Total: -46.16 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.20 Total: -3.89 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -28.91 -8.96 -37.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017187268.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.937 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds