Wall clock time and date at job start Tue Mar 31 2020 05:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00256 * 2 1 4 4 H 1.48493 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47197 * 300.00165 * 3 2 1 6 6 H 1.48499 * 109.47284 * 59.99845 * 3 2 1 7 7 C 1.37879 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99817 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.46585 * 185.37137 * 9 7 2 11 11 C 1.46894 * 111.00215 * 295.23352 * 10 9 7 12 12 C 1.53245 * 109.36268 * 187.24403 * 11 10 9 13 13 N 1.47092 * 108.51177 * 306.20860 * 12 11 10 14 14 C 1.37114 * 120.86039 * 231.11526 * 13 12 11 15 15 N 1.31214 * 126.52827 * 180.02562 * 14 13 12 16 16 C 1.31579 * 120.36866 * 180.02562 * 15 14 13 17 17 O 1.22153 * 122.61974 * 180.02562 * 16 15 14 18 18 C 1.46811 * 114.76564 * 0.02562 * 16 15 14 19 19 C 1.36362 * 128.19991 * 180.02562 * 18 16 15 20 20 C 1.41341 * 119.99720 * 351.93011 * 19 18 16 21 21 C 1.37178 * 125.48336 * 136.91814 * 20 19 18 22 22 C 1.37415 * 113.19991 * 179.97438 * 21 20 19 23 23 C 1.33881 * 115.13648 * 359.97438 * 22 21 20 24 24 S 1.70597 * 111.03525 * 359.72756 * 23 22 21 25 25 S 1.77281 * 126.52234 * 359.74259 * 14 13 12 26 26 C 1.47083 * 118.26022 * 51.14398 * 13 12 11 27 27 C 1.46899 * 110.99714 * 59.53849 * 10 9 7 28 28 H 0.97006 * 119.99905 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47092 * 65.38026 * 9 7 2 30 30 H 1.08994 * 109.47294 * 305.37142 * 9 7 2 31 31 H 1.09003 * 109.49420 * 307.21004 * 11 10 9 32 32 H 1.08999 * 109.49753 * 67.26807 * 11 10 9 33 33 H 1.08999 * 109.62850 * 65.89195 * 12 11 10 34 34 H 1.08996 * 109.62958 * 186.47594 * 12 11 10 35 35 H 1.07991 * 120.00397 * 171.92616 * 19 18 16 36 36 H 1.08002 * 123.39700 * 359.97438 * 21 20 19 37 37 H 1.08000 * 122.43137 * 180.02562 * 22 21 20 38 38 H 1.07996 * 124.48101 * 180.02562 * 23 22 21 39 39 H 1.08996 * 109.62689 * 189.11739 * 26 13 12 40 40 H 1.09005 * 109.78900 * 68.63207 * 26 13 12 41 41 H 1.09001 * 109.49360 * 292.69775 * 27 10 9 42 42 H 1.08996 * 109.49780 * 52.75644 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2002 -3.6127 0.1308 11 6 3.0850 -3.6897 -1.0392 12 6 3.9334 -4.9629 -0.9516 13 7 4.6191 -4.9786 0.3496 14 6 5.9726 -5.1834 0.4290 15 7 6.6941 -5.2196 1.5243 16 6 7.9921 -5.4252 1.4594 17 8 8.7026 -5.4672 2.4521 18 6 8.5198 -5.6004 0.1006 19 6 9.8093 -5.8269 -0.2805 20 6 10.8514 -5.7494 0.6712 21 6 11.8971 -6.6306 0.7805 22 6 12.7674 -6.3146 1.7959 23 6 12.4517 -5.2171 2.4945 24 16 11.0213 -4.5028 1.8995 25 16 7.0796 -5.4568 -0.9284 26 6 3.8149 -4.7695 1.5632 27 6 2.9716 -3.5037 1.3762 28 1 -0.4850 0.8401 0.0004 29 1 0.6988 -2.5999 -0.9339 30 1 0.5537 -2.5162 0.8382 31 1 2.4844 -3.7148 -1.9485 32 1 3.7387 -2.8177 -1.0590 33 1 3.2897 -5.8384 -1.0365 34 1 4.6706 -4.9677 -1.7545 35 1 10.0343 -6.0656 -1.3094 36 1 12.0235 -7.4863 0.1338 37 1 13.6429 -6.9081 2.0140 38 1 13.0290 -4.8319 3.3220 39 1 4.4740 -4.6469 2.4226 40 1 3.1595 -5.6257 1.7236 41 1 3.6273 -2.6346 1.3231 42 1 2.2888 -3.3934 2.2186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019342584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:16 Heat of formation + Delta-G solvation = 80.789318 kcal Electronic energy + Delta-G solvation = -26782.524145 eV Core-core repulsion = 22982.338013 eV Total energy + Delta-G solvation = -3800.186131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 363.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.07902 -39.10889 -38.03607 -36.40268 -34.65590 -33.87672 -32.47798 -31.16122 -29.10249 -28.37595 -25.89534 -25.10557 -23.84291 -23.75436 -22.73115 -21.91887 -20.17000 -19.73998 -19.10049 -18.21440 -17.70948 -16.55502 -16.27170 -15.80444 -15.63694 -15.38365 -15.00829 -14.85862 -14.72133 -14.51486 -14.34868 -13.97684 -13.42268 -13.32888 -13.22059 -12.87405 -12.63532 -12.49828 -12.20755 -12.05111 -11.76466 -11.43298 -11.26256 -11.17873 -10.97757 -10.88653 -10.78645 -10.69133 -10.45974 -10.13962 -10.02432 -9.80582 -9.33651 -9.06311 -8.62100 -8.57607 -8.31624 -7.85835 -7.49107 -6.17940 -4.27810 -0.26164 0.56789 0.89404 1.38922 1.53878 1.78051 2.02665 2.43649 2.59598 3.18113 3.27407 3.30423 3.53376 4.02853 4.29338 4.42289 4.63016 4.74557 4.87178 4.98982 5.08150 5.11915 5.16470 5.22835 5.27780 5.35808 5.38147 5.53038 5.57903 5.64358 5.83641 5.86479 6.11637 6.16812 6.25160 6.33007 6.45446 6.49709 6.68558 7.00238 7.34339 7.62776 7.68646 7.76655 7.95651 7.98360 8.08756 8.81102 9.40646 10.87521 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.002331 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.967616 B =12008.320871 C =12904.608471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.555 4.555 8 H 0.056 0.944 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.047 3.953 12 C 0.111 3.889 13 N -0.518 5.518 14 C 0.484 3.516 15 N -0.652 5.652 16 C 0.545 3.455 17 O -0.464 6.464 18 C -0.252 4.252 19 C 0.078 3.922 20 C -0.219 4.219 21 C -0.097 4.097 22 C -0.155 4.155 23 C -0.263 4.263 24 S 0.288 5.712 25 S -0.040 6.040 26 C 0.114 3.886 27 C 0.049 3.951 28 H 0.263 0.737 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.162 0.838 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.893 -13.540 -2.488 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.594 4.594 8 H 0.074 0.926 9 C 0.063 3.937 10 N -0.265 5.265 11 C -0.083 4.083 12 C -0.011 4.011 13 N -0.227 5.227 14 C 0.107 3.893 15 N -0.405 5.405 16 C 0.325 3.675 17 O -0.340 6.340 18 C -0.374 4.374 19 C 0.049 3.951 20 C -0.340 4.340 21 C -0.130 4.130 22 C -0.186 4.186 23 C -0.401 4.401 24 S 0.561 5.439 25 S 0.201 5.799 26 C -0.009 4.009 27 C -0.081 4.081 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.179 0.821 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.424 -12.505 -1.995 21.540 hybrid contribution 2.214 0.386 0.172 2.254 sum 19.639 -12.119 -1.823 23.149 Atomic orbital electron populations 1.69938 1.06011 1.26987 1.49593 1.24945 0.94771 0.99248 0.94616 0.86593 0.80133 0.83833 0.77818 1.19847 1.20832 1.20807 1.21717 0.93240 0.92015 1.52469 0.92553 1.19793 0.90550 0.85107 0.98271 1.62561 1.16671 1.47106 1.00138 1.22300 0.95475 0.94212 0.96298 1.22427 0.95792 1.01637 0.81249 1.46989 1.00521 1.64497 1.10726 1.24417 0.89427 0.84519 0.90932 1.66650 1.08088 1.38810 1.26927 1.18860 0.84052 0.76792 0.87840 1.90887 1.58677 1.45426 1.39027 1.26070 0.97258 1.14986 0.99078 1.19866 0.87607 0.89581 0.98041 1.22313 1.01624 1.04867 1.05178 1.20746 0.92888 0.99734 0.99632 1.19830 1.02153 0.98887 0.97736 1.25492 1.03977 1.03590 1.07056 1.83495 1.14203 1.23311 1.22894 1.85385 1.00726 1.83998 1.09823 1.22400 0.93475 0.99854 0.85178 1.22314 0.96370 0.94497 0.94913 0.92676 0.95059 0.94238 0.89186 0.93285 0.88846 0.89745 0.83503 0.83887 0.84631 0.82053 0.88071 0.89692 0.93223 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.56 -14.09 7.75 -34.44 -0.27 -14.35 16 8 H 0.06 1.44 5.88 -52.48 -0.31 1.13 16 9 C 0.19 4.32 5.11 -4.97 -0.03 4.30 16 10 N -0.54 -9.82 4.83 -235.76 -1.14 -10.96 16 11 C 0.05 0.73 5.24 -3.70 -0.02 0.71 16 12 C 0.11 1.34 6.65 -3.59 -0.02 1.31 16 13 N -0.52 -7.11 3.08 -172.82 -0.53 -7.64 16 14 C 0.48 7.04 8.09 -87.86 -0.71 6.33 16 15 N -0.65 -11.04 9.58 -13.40 -0.13 -11.17 16 16 C 0.54 9.12 7.78 -14.20 -0.11 9.01 16 17 O -0.46 -8.52 13.89 4.78 0.07 -8.45 16 18 C -0.25 -3.35 6.49 -36.79 -0.24 -3.59 16 19 C 0.08 0.84 9.92 -39.08 -0.39 0.45 16 20 C -0.22 -2.51 5.37 -38.79 -0.21 -2.72 16 21 C -0.10 -0.94 10.26 -40.27 -0.41 -1.35 16 22 C -0.15 -1.46 10.14 -41.41 -0.42 -1.88 16 23 C -0.26 -2.64 10.92 29.20 0.32 -2.33 16 24 S 0.29 3.49 19.56 -107.50 -2.10 1.39 16 25 S -0.04 -0.48 21.74 -107.50 -2.34 -2.82 16 26 C 0.11 1.60 6.68 -3.60 -0.02 1.58 16 27 C 0.05 0.82 5.16 -3.70 -0.02 0.81 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.03 0.76 8.07 -51.93 -0.42 0.35 16 30 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.35 8.06 -51.93 -0.42 0.93 16 32 H 0.05 0.88 6.90 -51.93 -0.36 0.52 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.87 6.69 -51.93 -0.35 0.52 16 35 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.10 1.47 7.34 -51.93 -0.38 1.09 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.97 6.81 -51.93 -0.35 0.62 16 42 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -30.77 370.63 -12.62 -43.39 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.10 Total: -0.91 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.65 Total: -0.02 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -1.06 Total: -53.76 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -4.44 Total: -1.43 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.77 -12.62 -43.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019342584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.177 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds