Wall clock time and date at job start Tue Mar 31 2020 06:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99756 * 2 1 4 4 H 1.48496 * 109.47196 * 269.99606 * 3 2 1 5 5 H 1.48496 * 109.47454 * 29.99846 * 3 2 1 6 6 H 1.48504 * 109.47125 * 149.99437 * 3 2 1 7 7 C 1.37868 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00380 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00155 * 179.97438 * 7 2 1 10 10 N 1.46492 * 109.47199 * 180.02562 * 9 7 2 11 11 N 1.39523 * 119.07755 * 270.00514 * 10 9 7 12 12 C 1.30870 * 122.51485 * 179.97438 * 11 10 9 13 13 C 1.48132 * 120.07647 * 180.02562 * 12 11 10 14 14 C 1.39469 * 120.08243 * 40.56216 * 13 12 11 15 15 C 1.37902 * 119.97560 * 179.81492 * 14 13 12 16 16 C 1.38867 * 120.24595 * 0.52482 * 15 14 13 17 17 C 1.39133 * 120.02864 * 359.64142 * 16 15 14 18 18 C 1.38444 * 119.94735 * 0.12371 * 17 16 15 19 19 O 1.36140 * 120.77128 * 180.26529 * 17 16 15 20 20 C 1.43166 * 116.72338 * 342.83218 * 19 17 16 21 21 C 1.53464 * 108.24051 * 46.17257 * 20 19 17 22 22 O 1.36106 * 119.24794 * 179.55788 * 16 15 14 23 23 C 1.47015 * 119.84005 * 359.97438 * 12 11 10 24 24 C 1.39407 * 121.78836 * 180.02562 * 23 12 11 25 25 C 1.37752 * 119.58111 * 179.97438 * 24 23 12 26 26 C 1.38876 * 120.73088 * 0.02936 * 25 24 23 27 27 C 1.37748 * 120.67056 * 359.94872 * 26 25 24 28 28 C 1.39431 * 119.53190 * 0.04619 * 27 26 25 29 29 C 1.34868 * 119.07191 * 89.98191 * 10 9 7 30 30 O 1.21806 * 120.52468 * 0.04564 * 29 10 9 31 31 H 0.96998 * 120.00246 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.46308 * 60.00769 * 9 7 2 33 33 H 1.08998 * 109.46986 * 300.00910 * 9 7 2 34 34 H 1.08000 * 120.01599 * 0.05182 * 14 13 12 35 35 H 1.07996 * 119.87471 * 180.25804 * 15 14 13 36 36 H 1.07995 * 120.02082 * 179.91749 * 18 17 16 37 37 H 1.09002 * 109.70751 * 165.86109 * 20 19 17 38 38 H 1.08999 * 109.70951 * 286.48376 * 20 19 17 39 39 H 1.09000 * 109.70838 * 59.88393 * 21 20 19 40 40 H 1.09002 * 109.71108 * 180.51513 * 21 20 19 41 41 H 1.07992 * 120.20891 * 359.95920 * 24 23 12 42 42 H 1.07993 * 119.63299 * 179.97438 * 25 24 23 43 43 H 1.08001 * 119.66619 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.23530 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9998 -2.5752 0.0001 11 7 4.2262 -3.2142 1.2195 12 6 4.6612 -4.4460 1.2981 13 6 4.8825 -5.0721 2.6222 14 6 3.9741 -4.8561 3.6582 15 6 4.1802 -5.4432 4.8889 16 6 5.2959 -6.2412 5.1052 17 6 6.2073 -6.4574 4.0764 18 6 6.0024 -5.8742 2.8376 19 8 7.3034 -7.2413 4.2701 20 6 7.6727 -7.5075 5.6275 21 6 6.4064 -7.8960 6.4025 22 8 5.4841 -6.8033 6.3304 23 6 4.9286 -5.2072 0.0691 24 6 5.3921 -6.5214 0.1054 25 6 5.6272 -7.1924 -1.0744 26 6 5.4082 -6.5739 -2.2984 27 6 4.9501 -5.2762 -2.3579 28 6 4.7055 -4.5788 -1.1756 29 6 4.2175 -3.1934 -1.1786 30 8 4.0121 -2.6123 -2.2292 31 1 -0.4850 0.8400 -0.0004 32 1 3.8751 -0.6797 0.8896 33 1 3.8745 -0.6806 -0.8904 34 1 3.1075 -4.2325 3.4956 35 1 3.4736 -5.2782 5.6887 36 1 6.7097 -6.0401 2.0386 37 1 8.3894 -8.3281 5.6592 38 1 8.1151 -6.6150 6.0699 39 1 5.9597 -8.7841 5.9554 40 1 6.6593 -8.0955 7.4438 41 1 5.5660 -7.0103 1.0525 42 1 5.9867 -8.2104 -1.0473 43 1 5.5986 -7.1160 -3.2129 44 1 4.7817 -4.8022 -3.3136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019898048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:06 Heat of formation + Delta-G solvation = 3.950767 kcal Electronic energy + Delta-G solvation = -31791.330073 eV Core-core repulsion = 27447.729582 eV Total energy + Delta-G solvation = -4343.600491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49284 -40.58780 -38.41847 -37.90246 -37.49615 -36.38688 -33.76992 -32.51138 -31.51165 -31.37730 -30.40216 -30.31355 -28.78829 -27.65545 -25.30199 -24.26532 -23.93370 -23.01646 -21.90058 -21.78694 -20.65287 -18.91134 -18.42473 -18.21847 -17.43233 -17.16894 -17.04897 -16.26190 -15.65758 -15.46859 -15.20948 -15.06903 -15.01494 -14.70336 -14.53722 -14.28702 -14.17310 -14.06168 -13.82444 -13.55690 -13.30560 -12.70221 -12.51943 -12.42544 -12.30909 -12.06148 -12.02824 -11.87176 -11.51950 -11.37965 -11.25246 -11.01276 -10.82632 -10.65516 -10.43217 -10.23828 -9.65458 -9.24959 -9.12736 -9.01517 -8.80845 -8.64668 -8.35535 -7.61572 -6.13952 -4.14781 0.59960 0.83017 1.09771 1.16981 2.33195 2.60344 2.82360 2.96807 3.08962 3.28053 3.33843 3.34741 3.56040 3.88635 4.06712 4.08151 4.34722 4.36825 4.42705 4.45485 4.54204 4.68256 4.82300 4.87343 5.03538 5.06693 5.08701 5.14998 5.18727 5.25855 5.31347 5.36867 5.57981 5.61636 5.86929 5.88582 5.94272 5.98478 6.25094 6.31047 6.36082 6.44036 6.48622 6.60923 6.63670 6.73299 6.81933 6.89641 7.16010 7.44057 8.22060 8.38464 8.56956 8.86773 9.42309 10.99037 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.009668 B = 0.003171 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.485583 B = 8827.295733 C =11122.866018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.227 3.773 10 N -0.392 5.392 11 N -0.189 5.189 12 C 0.131 3.869 13 C -0.014 4.014 14 C -0.073 4.073 15 C -0.111 4.111 16 C 0.057 3.943 17 C 0.047 3.953 18 C -0.097 4.097 19 O -0.307 6.307 20 C 0.021 3.979 21 C 0.020 3.980 22 O -0.306 6.306 23 C -0.043 4.043 24 C -0.112 4.112 25 C -0.095 4.095 26 C -0.123 4.123 27 C -0.055 4.055 28 C -0.121 4.121 29 C 0.520 3.480 30 O -0.513 6.513 31 H 0.267 0.733 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.742 -20.142 10.323 28.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.125 4.125 3 Si 0.700 3.300 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.570 4.570 8 H 0.094 0.906 9 C 0.108 3.892 10 N -0.210 5.210 11 N 0.000 5.000 12 C -0.051 4.051 13 C -0.016 4.016 14 C -0.092 4.092 15 C -0.130 4.130 16 C 0.011 3.989 17 C 0.002 3.998 18 C -0.117 4.117 19 O -0.221 6.221 20 C -0.055 4.055 21 C -0.056 4.056 22 O -0.221 6.221 23 C -0.046 4.046 24 C -0.132 4.132 25 C -0.114 4.114 26 C -0.142 4.142 27 C -0.074 4.074 28 C -0.127 4.127 29 C 0.310 3.690 30 O -0.388 6.388 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.160 0.840 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 16.160 -18.765 10.169 26.771 hybrid contribution 0.524 0.148 -0.418 0.687 sum 16.684 -18.617 9.751 26.833 Atomic orbital electron populations 1.69875 1.06146 1.27213 1.49692 1.24763 0.94805 0.98820 0.94133 0.86881 0.80404 0.83687 0.79021 1.19687 1.20667 1.18781 1.21122 0.88152 0.95275 1.52488 0.90585 1.20018 0.96554 0.73775 0.98856 1.49417 1.56549 1.15366 0.99648 1.74638 1.07552 1.08990 1.08774 1.21220 1.01597 0.90618 0.91675 1.17616 0.95382 0.98007 0.90612 1.21185 0.99472 0.97891 0.90684 1.20404 0.95606 0.98861 0.98099 1.19031 0.95495 0.99290 0.85055 1.18570 0.88278 0.98149 0.94768 1.20438 0.98275 0.97451 0.95565 1.86308 1.42916 1.65693 1.27230 1.23620 0.97138 1.03209 0.81512 1.23629 0.89606 0.88903 1.03427 1.86324 1.61762 1.47364 1.26631 1.19486 0.98647 0.94907 0.91596 1.21429 0.99275 0.93086 0.99439 1.21287 0.98102 0.99876 0.92124 1.21234 0.99980 0.94727 0.98256 1.21118 0.94818 0.93817 0.97629 1.20202 1.03739 0.94860 0.93924 1.18525 0.79445 0.86562 0.84488 1.90859 1.51594 1.66672 1.29655 0.92304 0.93197 0.92906 0.83627 0.84169 0.83874 0.86114 0.90441 0.90409 0.86149 0.84042 0.85236 0.85120 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.57 13.96 55.43 0.77 -26.79 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 3 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -6.11 6.54 56.52 0.37 -5.75 16 7 C -0.53 -15.69 9.94 -34.44 -0.34 -16.03 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.23 5.82 4.46 -5.19 -0.02 5.80 16 10 N -0.39 -9.22 3.49 -62.68 -0.22 -9.44 16 11 N -0.19 -3.89 11.15 34.56 0.39 -3.50 16 12 C 0.13 2.23 6.69 -80.66 -0.54 1.69 16 13 C -0.01 -0.19 5.48 -104.94 -0.58 -0.77 16 14 C -0.07 -0.97 9.61 -39.25 -0.38 -1.35 16 15 C -0.11 -1.30 9.94 -39.47 -0.39 -1.69 16 16 C 0.06 0.65 6.50 -39.02 -0.25 0.40 16 17 C 0.05 0.54 6.49 -39.17 -0.25 0.28 16 18 C -0.10 -1.16 7.57 -39.06 -0.30 -1.45 16 19 O -0.31 -3.03 10.41 -32.95 -0.34 -3.37 16 20 C 0.02 0.13 7.26 37.40 0.27 0.40 16 21 C 0.02 0.12 7.26 37.40 0.27 0.39 16 22 O -0.31 -3.11 10.41 -32.84 -0.34 -3.45 16 23 C -0.04 -0.68 5.85 -104.78 -0.61 -1.29 16 24 C -0.11 -1.36 8.49 -39.32 -0.33 -1.69 16 25 C -0.10 -0.98 10.01 -39.52 -0.40 -1.38 16 26 C -0.12 -1.37 10.01 -39.52 -0.40 -1.76 16 27 C -0.05 -0.82 9.66 -39.32 -0.38 -1.20 16 28 C -0.12 -2.20 5.89 -104.83 -0.62 -2.82 16 29 C 0.52 11.84 7.69 -12.72 -0.10 11.74 16 30 O -0.51 -13.00 16.10 5.09 0.08 -12.92 16 31 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.05 1.23 7.20 -51.93 -0.37 0.86 16 33 H 0.05 1.38 6.80 -51.93 -0.35 1.02 16 34 H 0.15 2.05 8.05 -52.49 -0.42 1.62 16 35 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.14 1.54 6.36 -52.49 -0.33 1.20 16 37 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.14 1.44 5.13 -52.49 -0.27 1.17 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.14 2.04 7.79 -52.49 -0.41 1.63 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -36.14 372.45 -8.87 -45.01 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.71 Total: 0.58 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -5.44 Total: -8.54 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.94 Total: -39.73 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.60 Total: -19.74 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.14 -8.87 -45.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019898048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.959 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds