Wall clock time and date at job start Tue Mar 31 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35355 * 116.99886 * 2 1 4 4 N 1.32197 * 119.50928 * 0.02562 * 3 2 1 5 5 C 1.32415 * 122.21439 * 180.02562 * 4 3 2 6 6 N 1.38049 * 119.54699 * 179.97438 * 5 4 3 7 7 C 1.40654 * 120.90933 * 0.02562 * 5 4 3 8 8 C 1.43200 * 120.55096 * 179.97438 * 7 5 4 9 9 N 6.67273 * 115.46283 * 359.97438 * 2 1 3 10 10 C 1.40942 * 118.89908 * 359.97438 * 7 5 4 11 11 C 1.47786 * 120.98959 * 180.02562 * 10 7 5 12 12 C 1.39687 * 120.06698 * 244.72988 * 11 10 7 13 13 C 1.37715 * 119.92923 * 179.74231 * 12 11 10 14 14 C 1.39137 * 120.06595 * 0.55550 * 13 12 11 15 15 N 1.39305 * 119.93196 * 179.72051 * 14 13 12 16 16 C 1.46499 * 120.00045 * 179.97438 * 15 14 13 17 17 C 1.46503 * 120.00160 * 359.97360 * 15 14 13 18 18 C 1.50704 * 109.46935 * 90.00239 * 17 15 14 19 19 H 1.07997 * 120.00223 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99916 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00005 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99803 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47305 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46825 * 119.99809 * 22 20 18 25 25 H 1.48497 * 109.47083 * 239.99418 * 22 20 18 26 26 C 1.39135 * 120.13391 * 359.69307 * 14 13 12 27 27 C 1.37709 * 120.06383 * 0.03003 * 26 14 13 28 28 C 1.40406 * 119.50478 * 180.27454 * 3 2 1 29 29 C 1.43193 * 120.51830 * 0.03050 * 28 3 2 30 30 N 3.52957 * 165.46409 * 181.14195 * 2 1 3 31 31 H 1.08993 * 109.46843 * 60.00061 * 1 2 3 32 32 H 1.09000 * 109.46831 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47094 * 300.00138 * 1 2 3 34 34 H 0.96994 * 120.00374 * 180.02562 * 6 5 4 35 35 H 0.97007 * 119.99717 * 0.02562 * 6 5 4 36 36 H 1.07994 * 120.03526 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.96255 * 180.27256 * 13 12 11 38 38 H 1.09000 * 109.46939 * 90.00009 * 16 15 14 39 39 H 1.09004 * 109.46906 * 209.99609 * 16 15 14 40 40 H 1.08993 * 109.47181 * 329.99792 * 16 15 14 41 41 H 1.09003 * 109.47348 * 210.00080 * 17 15 14 42 42 H 1.09005 * 109.47144 * 330.00356 * 17 15 14 43 43 H 0.96998 * 119.99652 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.96621 * 179.97438 * 26 14 13 45 45 H 1.07999 * 120.03208 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 1.3140 2.3085 0.0005 5 6 1.8588 3.5154 0.0000 6 7 1.0442 4.6300 0.0001 7 6 3.2559 3.6774 -0.0016 8 6 3.8369 4.9863 -0.0026 9 7 4.2978 6.0246 -0.0027 10 6 4.0747 2.5302 -0.0022 11 6 5.5479 2.6468 -0.0033 12 6 6.2855 2.1875 -1.0971 13 6 7.6578 2.3024 -1.0974 14 6 8.3106 2.8647 -0.0049 15 7 9.6993 2.9743 -0.0057 16 6 10.3880 3.5666 1.1436 17 6 10.4711 2.4971 -1.1559 18 6 10.6341 3.6172 -2.1509 19 1 10.2061 4.5875 -1.9468 20 6 11.3298 3.4031 -3.3220 21 7 11.8514 2.2217 -3.5704 22 14 11.5312 4.7913 -4.5556 23 1 10.8556 6.0106 -4.0436 24 1 12.9761 5.0716 -4.7537 25 1 10.9218 4.3951 -5.8505 26 6 7.5790 3.3184 1.0883 27 6 6.2061 3.2114 1.0919 28 6 3.4462 1.2674 -0.0059 29 6 4.2266 0.0668 -0.0125 30 7 4.8456 -0.8857 -0.0177 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.4362 5.5172 -0.0006 35 1 0.0798 4.5259 0.0008 36 1 5.7798 1.7462 -1.9431 37 1 8.2283 1.9515 -1.9447 38 1 10.6323 2.7851 1.8631 39 1 11.3051 4.0507 0.8077 40 1 9.7393 4.3046 1.6152 41 1 11.4530 2.1627 -0.8211 42 1 9.9454 1.6664 -1.6268 43 1 12.3411 2.0713 -4.3941 44 1 8.0884 3.7540 1.9351 45 1 5.6387 3.5640 1.9405 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020458430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:29 Heat of formation + Delta-G solvation = 100.175070 kcal Electronic energy + Delta-G solvation = -31040.388944 eV Core-core repulsion = 26830.972465 eV Total energy + Delta-G solvation = -4209.416479 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.144 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.30828 -39.30226 -38.71037 -36.81916 -36.45684 -35.78106 -34.73204 -33.09682 -32.55301 -30.75316 -30.37001 -29.20183 -27.93879 -27.61607 -25.46062 -24.47484 -23.82533 -22.39152 -21.64135 -20.57630 -20.00459 -18.92565 -18.48648 -17.45049 -16.82087 -16.58488 -16.54571 -16.26206 -15.70402 -15.27695 -14.87894 -14.66514 -14.54176 -14.30269 -13.91280 -13.82549 -13.47320 -13.40512 -13.17804 -13.12615 -12.92309 -12.89461 -12.75071 -12.39176 -12.24805 -12.13611 -11.98731 -11.96345 -11.58423 -11.44426 -11.34780 -11.00530 -10.80353 -10.60175 -10.35723 -10.35188 -10.09530 -9.88160 -9.72666 -8.96084 -8.56803 -8.51057 -8.26727 -6.62992 -6.10353 -4.23428 0.42019 0.56298 1.92156 1.94561 2.40119 2.58877 2.59339 2.88055 2.89961 3.22815 3.31277 3.32642 3.36262 3.77096 3.79535 3.92194 3.99750 4.03898 4.28019 4.37140 4.63603 4.70730 4.89440 4.95468 5.15448 5.16446 5.24599 5.27917 5.32558 5.56964 5.57872 5.69652 5.84750 5.96040 6.06308 6.14497 6.26524 6.41239 6.46954 6.50844 6.73572 6.83187 6.84764 6.90278 7.06354 7.24307 7.34228 7.39782 7.55882 7.74825 7.75967 8.05220 8.11212 8.29603 8.85013 9.43847 10.90345 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.002605 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.258285 B =10744.078532 C =11301.217883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.291 6.291 3 C 0.443 3.557 4 N -0.601 5.601 5 C 0.513 3.487 6 N -0.825 5.825 7 C -0.185 4.185 8 C 0.267 3.733 9 N -0.412 5.412 10 C 0.205 3.795 11 C -0.192 4.192 12 C -0.033 4.033 13 C -0.187 4.187 14 C 0.263 3.737 15 N -0.604 5.604 16 C 0.093 3.907 17 C 0.244 3.756 18 C -0.534 4.534 19 H 0.061 0.939 20 C 0.063 3.937 21 N -0.893 5.893 22 Si 0.896 3.104 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.223 4.223 27 C -0.032 4.032 28 C -0.154 4.154 29 C 0.275 3.725 30 N -0.412 5.412 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.415 0.585 35 H 0.413 0.587 36 H 0.117 0.883 37 H 0.139 0.861 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.264 0.736 44 H 0.121 0.879 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.747 0.720 9.696 26.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.195 6.195 3 C 0.259 3.741 4 N -0.336 5.336 5 C 0.270 3.730 6 N -0.366 5.366 7 C -0.197 4.197 8 C -0.049 4.049 9 N -0.088 5.088 10 C 0.194 3.806 11 C -0.195 4.195 12 C -0.053 4.053 13 C -0.210 4.210 14 C 0.152 3.848 15 N -0.306 5.306 16 C -0.051 4.051 17 C 0.125 3.875 18 C -0.573 4.573 19 H 0.079 0.921 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.724 3.276 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.246 4.246 27 C -0.052 4.052 28 C -0.164 4.164 29 C -0.041 4.041 30 N -0.088 5.088 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.247 0.753 35 H 0.243 0.757 36 H 0.135 0.865 37 H 0.157 0.843 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.139 0.861 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.471 0.412 9.547 25.342 hybrid contribution 0.156 1.221 -0.819 1.479 sum -23.315 1.633 8.728 24.948 Atomic orbital electron populations 1.23028 0.76148 1.03646 1.03048 1.86304 1.23830 1.23753 1.85590 1.19247 0.86976 0.84002 0.83913 1.66679 1.38889 0.96710 1.31322 1.17510 0.85798 0.85925 0.83789 1.42265 1.09680 1.05504 1.79132 1.15975 0.90581 0.87457 1.25688 1.24840 0.94283 0.92079 0.93652 1.81297 1.05786 1.11702 1.10058 1.18658 0.93011 0.87919 0.81056 1.17979 0.88530 1.13968 0.99043 1.20753 0.93336 0.95252 0.95913 1.20824 0.93816 1.06517 0.99811 1.18115 0.84261 0.89823 0.92588 1.47217 1.02402 1.61527 1.19406 1.21575 0.97800 0.97182 0.88538 1.19408 0.90861 0.95239 0.82003 1.21563 1.34686 0.97873 1.03130 0.92113 1.24958 0.95203 0.95846 0.97968 1.69937 1.35750 1.21620 1.25829 0.86463 0.77839 0.82234 0.81104 1.19672 1.20883 1.20759 1.20484 0.93645 1.10552 0.99878 1.20585 0.93696 0.95006 0.95870 1.15513 0.88055 0.88588 1.24218 1.24609 0.93395 0.92236 0.93828 1.81223 1.07540 1.10632 1.09435 0.91561 0.88173 0.91601 0.75308 0.75651 0.86457 0.84288 0.94075 0.91053 0.92371 0.94833 0.94322 0.92585 0.86112 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.37 101.05 1.05 1.24 16 2 O -0.29 -2.73 9.88 -17.76 -0.18 -2.91 16 3 C 0.44 4.45 7.50 -16.58 -0.12 4.33 16 4 N -0.60 -5.11 9.16 -12.02 -0.11 -5.22 16 5 C 0.51 4.23 7.74 -155.35 -1.20 3.03 16 6 N -0.83 -4.15 8.96 31.25 0.28 -3.87 16 7 C -0.19 -1.96 5.80 -106.04 -0.62 -2.58 16 8 C 0.27 3.26 12.71 -22.47 -0.29 2.97 16 9 N -0.41 -5.91 18.54 41.84 0.78 -5.14 16 10 C 0.20 2.52 5.39 -103.90 -0.56 1.96 16 11 C -0.19 -2.89 4.17 -104.91 -0.44 -3.33 16 12 C -0.03 -0.56 9.05 -39.23 -0.36 -0.92 16 13 C -0.19 -3.71 9.18 -39.44 -0.36 -4.08 16 14 C 0.26 5.17 6.55 -83.80 -0.55 4.62 16 15 N -0.60 -12.60 2.98 -180.97 -0.54 -13.14 16 16 C 0.09 1.58 10.18 59.85 0.61 2.19 16 17 C 0.24 6.02 4.90 -5.19 -0.03 5.99 16 18 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 19 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 22 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.22 -3.74 9.18 -39.44 -0.36 -4.10 16 27 C -0.03 -0.49 9.08 -39.23 -0.36 -0.84 16 28 C -0.15 -1.85 5.80 -106.09 -0.61 -2.46 16 29 C 0.28 3.99 13.49 -22.48 -0.30 3.69 16 30 N -0.41 -6.92 18.54 41.84 0.78 -6.15 16 31 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 34 H 0.42 1.94 7.63 -40.82 -0.31 1.63 16 35 H 0.41 1.15 8.95 -40.82 -0.37 0.79 16 36 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.14 3.04 6.12 -52.49 -0.32 2.72 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.06 0.87 6.18 -51.93 -0.32 0.55 16 41 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 42 H 0.04 1.01 6.18 -51.93 -0.32 0.69 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.12 1.81 6.12 -52.49 -0.32 1.49 16 45 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 400.18 15.07 6.03 6.03 Total: -1.00 -32.14 400.18 -7.04 -39.18 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.88 Total: 1.00 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -4.92 Total: -1.35 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 1.92 Total: -58.18 kcal Atomic # 8 Polarization: -2.73 SS G_CDS: -0.18 Total: -2.91 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.14 -7.04 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020458430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.357 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds