Wall clock time and date at job start Tue Mar 31 2020 05:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35355 * 116.99886 * 2 1 4 4 N 1.32197 * 119.50928 * 0.02562 * 3 2 1 5 5 C 1.32415 * 122.21439 * 180.02562 * 4 3 2 6 6 N 1.38049 * 119.54699 * 179.97438 * 5 4 3 7 7 C 1.40654 * 120.90933 * 0.02562 * 5 4 3 8 8 C 1.43200 * 120.55096 * 179.97438 * 7 5 4 9 9 N 6.67273 * 115.46283 * 359.97438 * 2 1 3 10 10 C 1.40942 * 118.89908 * 359.97438 * 7 5 4 11 11 C 1.47786 * 120.98959 * 180.02562 * 10 7 5 12 12 C 1.39687 * 120.06698 * 244.72988 * 11 10 7 13 13 C 1.37715 * 119.92923 * 179.74231 * 12 11 10 14 14 C 1.39137 * 120.06595 * 0.55550 * 13 12 11 15 15 N 1.39305 * 119.93196 * 179.72051 * 14 13 12 16 16 C 1.46499 * 120.00045 * 179.97438 * 15 14 13 17 17 C 1.46503 * 120.00160 * 359.97360 * 15 14 13 18 18 C 1.50704 * 109.46935 * 90.00239 * 17 15 14 19 19 H 1.07997 * 120.00223 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99916 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00005 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99803 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47305 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46825 * 119.99809 * 22 20 18 25 25 H 1.48497 * 109.47083 * 239.99418 * 22 20 18 26 26 C 1.39135 * 120.13391 * 359.69307 * 14 13 12 27 27 C 1.37709 * 120.06383 * 0.03003 * 26 14 13 28 28 C 1.40406 * 119.50478 * 180.27454 * 3 2 1 29 29 C 1.43193 * 120.51830 * 0.03050 * 28 3 2 30 30 N 3.52957 * 165.46409 * 181.14195 * 2 1 3 31 31 H 1.08993 * 109.46843 * 60.00061 * 1 2 3 32 32 H 1.09000 * 109.46831 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47094 * 300.00138 * 1 2 3 34 34 H 0.96994 * 120.00374 * 180.02562 * 6 5 4 35 35 H 0.97007 * 119.99717 * 0.02562 * 6 5 4 36 36 H 1.07994 * 120.03526 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.96255 * 180.27256 * 13 12 11 38 38 H 1.09000 * 109.46939 * 90.00009 * 16 15 14 39 39 H 1.09004 * 109.46906 * 209.99609 * 16 15 14 40 40 H 1.08993 * 109.47181 * 329.99792 * 16 15 14 41 41 H 1.09003 * 109.47348 * 210.00080 * 17 15 14 42 42 H 1.09005 * 109.47144 * 330.00356 * 17 15 14 43 43 H 0.96998 * 119.99652 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.96621 * 179.97438 * 26 14 13 45 45 H 1.07999 * 120.03208 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 1.3140 2.3085 0.0005 5 6 1.8588 3.5154 0.0000 6 7 1.0442 4.6300 0.0001 7 6 3.2559 3.6774 -0.0016 8 6 3.8369 4.9863 -0.0026 9 7 4.2978 6.0246 -0.0027 10 6 4.0747 2.5302 -0.0022 11 6 5.5479 2.6468 -0.0033 12 6 6.2855 2.1875 -1.0971 13 6 7.6578 2.3024 -1.0974 14 6 8.3106 2.8647 -0.0049 15 7 9.6993 2.9743 -0.0057 16 6 10.3880 3.5666 1.1436 17 6 10.4711 2.4971 -1.1559 18 6 10.6341 3.6172 -2.1509 19 1 10.2061 4.5875 -1.9468 20 6 11.3298 3.4031 -3.3220 21 7 11.8514 2.2217 -3.5704 22 14 11.5312 4.7913 -4.5556 23 1 10.8556 6.0106 -4.0436 24 1 12.9761 5.0716 -4.7537 25 1 10.9218 4.3951 -5.8505 26 6 7.5790 3.3184 1.0883 27 6 6.2061 3.2114 1.0919 28 6 3.4462 1.2674 -0.0059 29 6 4.2266 0.0668 -0.0125 30 7 4.8456 -0.8857 -0.0177 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.4362 5.5172 -0.0006 35 1 0.0798 4.5259 0.0008 36 1 5.7798 1.7462 -1.9431 37 1 8.2283 1.9515 -1.9447 38 1 10.6323 2.7851 1.8631 39 1 11.3051 4.0507 0.8077 40 1 9.7393 4.3046 1.6152 41 1 11.4530 2.1627 -0.8211 42 1 9.9454 1.6664 -1.6268 43 1 12.3411 2.0713 -4.3941 44 1 8.0884 3.7540 1.9351 45 1 5.6387 3.5640 1.9405 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020458430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:27 Heat of formation + Delta-G solvation = 79.696236 kcal Electronic energy + Delta-G solvation = -31041.276973 eV Core-core repulsion = 26830.972465 eV Total energy + Delta-G solvation = -4210.304508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.144 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.13395 -40.53690 -39.58482 -37.98077 -37.48435 -37.10300 -35.64817 -34.81117 -33.77560 -32.12971 -31.21043 -30.51167 -29.65936 -28.24587 -26.93557 -25.36597 -25.20658 -23.71248 -23.06223 -21.72220 -21.16022 -19.67657 -19.34305 -18.68439 -18.35542 -18.07588 -17.28425 -17.02939 -16.89001 -16.63553 -16.17327 -15.93693 -15.47012 -15.39001 -15.25962 -15.09035 -14.63782 -14.56240 -14.43943 -14.43116 -14.11207 -14.03107 -13.96711 -13.84340 -13.43000 -13.27026 -13.22570 -13.06986 -12.88879 -12.74769 -12.61676 -12.60245 -12.53776 -12.25428 -11.81887 -11.67963 -11.28203 -11.16567 -10.74473 -10.67870 -10.39001 -9.88269 -9.04531 -8.42091 -7.93800 -6.41037 -0.43993 -0.33771 0.56360 0.61633 1.33697 1.35755 1.47748 1.60743 1.68070 1.70550 1.82917 2.24776 2.29542 2.30372 2.51634 2.79298 2.86675 2.92218 3.02180 3.03287 3.13945 3.74108 3.90639 3.95861 4.04105 4.22147 4.31915 4.46975 4.55824 4.56726 4.59384 4.63770 4.65925 4.73505 4.75791 4.91685 4.93292 4.94784 5.13022 5.16649 5.44261 5.46985 5.57682 5.64025 5.85511 5.91536 5.94362 6.01717 6.25484 6.38701 6.52575 6.64881 6.75006 6.79326 6.89308 7.30592 8.80122 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.002605 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.258285 B =10744.078532 C =11301.217883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.304 6.304 3 C 0.460 3.540 4 N -0.586 5.586 5 C 0.531 3.469 6 N -0.800 5.800 7 C -0.186 4.186 8 C 0.285 3.715 9 N -0.449 5.449 10 C 0.202 3.798 11 C -0.177 4.177 12 C -0.038 4.038 13 C -0.215 4.215 14 C 0.235 3.765 15 N -0.622 5.622 16 C 0.093 3.907 17 C 0.263 3.737 18 C -0.540 4.540 19 H 0.049 0.951 20 C 0.014 3.986 21 N -0.925 5.925 22 Si 0.960 3.040 23 H -0.271 1.271 24 H -0.273 1.273 25 H -0.277 1.277 26 C -0.217 4.217 27 C -0.031 4.031 28 C -0.170 4.170 29 C 0.293 3.707 30 N -0.465 5.465 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.421 0.579 35 H 0.428 0.572 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.268 0.732 44 H 0.143 0.857 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.597 2.437 10.833 30.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.207 6.207 3 C 0.274 3.726 4 N -0.321 5.321 5 C 0.284 3.716 6 N -0.340 5.340 7 C -0.198 4.198 8 C -0.030 4.030 9 N -0.126 5.126 10 C 0.191 3.809 11 C -0.179 4.179 12 C -0.057 4.057 13 C -0.238 4.238 14 C 0.127 3.873 15 N -0.326 5.326 16 C -0.050 4.050 17 C 0.141 3.859 18 C -0.579 4.579 19 H 0.068 0.932 20 C -0.185 4.185 21 N -0.565 5.565 22 Si 0.785 3.215 23 H -0.196 1.196 24 H -0.199 1.199 25 H -0.203 1.203 26 C -0.239 4.239 27 C -0.050 4.050 28 C -0.179 4.179 29 C -0.022 4.022 30 N -0.142 5.142 31 H 0.093 0.907 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.254 0.746 35 H 0.262 0.738 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.077 0.923 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -27.399 2.162 10.710 29.497 hybrid contribution 1.012 0.673 -1.128 1.658 sum -26.386 2.834 9.582 28.215 Atomic orbital electron populations 1.23364 0.73852 1.05377 1.03995 1.86311 1.26124 1.23418 1.84895 1.19139 0.86261 0.84725 0.82478 1.66850 1.37773 0.96262 1.31261 1.17483 0.85150 0.86608 0.82353 1.42308 1.10413 1.04850 1.76467 1.15822 0.91384 0.85938 1.26667 1.24962 0.93458 0.91967 0.92577 1.81335 1.06754 1.12912 1.11580 1.18352 0.91388 0.88790 0.82374 1.18216 0.90299 1.11520 0.97914 1.20860 0.92366 0.95318 0.97141 1.20693 0.95032 1.08550 0.99488 1.18350 0.83895 0.91319 0.93736 1.47040 1.02931 1.63233 1.19416 1.21705 0.97592 0.98056 0.87626 1.18869 0.89959 0.93972 0.83088 1.21746 1.34344 0.97837 1.03989 0.93221 1.25761 0.94913 0.98117 0.99753 1.70041 1.36517 1.23392 1.26524 0.85471 0.78123 0.79201 0.78687 1.19577 1.19862 1.20255 1.20746 0.94342 1.09562 0.99291 1.20991 0.93272 0.94061 0.96672 1.15412 0.88851 0.87211 1.26461 1.25026 0.92538 0.92212 0.92385 1.81237 1.09002 1.12277 1.11649 0.90693 0.86268 0.90457 0.74605 0.73784 0.85624 0.87858 0.92415 0.92111 0.90012 0.96848 0.96916 0.92326 0.83950 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.37 113.37 1.18 1.38 16 2 O -0.30 -4.91 9.88 -86.45 -0.85 -5.77 16 3 C 0.46 7.93 7.50 85.17 0.64 8.57 16 4 N -0.59 -7.66 9.16 -305.02 -2.79 -10.45 16 5 C 0.53 6.64 7.74 133.76 1.04 7.68 16 6 N -0.80 -4.53 8.96 -55.05 -0.49 -5.02 16 7 C -0.19 -3.38 5.80 -20.78 -0.12 -3.50 16 8 C 0.28 6.22 12.71 88.33 1.12 7.34 16 9 N -0.45 -11.97 18.54 19.00 0.35 -11.61 16 10 C 0.20 4.56 5.39 -19.40 -0.10 4.46 16 11 C -0.18 -5.15 4.17 -20.05 -0.08 -5.23 16 12 C -0.04 -1.32 9.05 22.50 0.20 -1.11 16 13 C -0.21 -9.09 9.18 22.36 0.21 -8.88 16 14 C 0.23 9.56 6.55 38.39 0.25 9.82 16 15 N -0.62 -27.14 2.98 -726.47 -2.17 -29.31 16 16 C 0.09 3.18 10.18 127.77 1.30 4.48 16 17 C 0.26 13.84 4.90 85.63 0.42 14.26 16 18 C -0.54 -30.47 9.39 25.60 0.24 -30.23 16 19 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 20 C 0.01 0.79 5.46 84.66 0.46 1.26 16 21 N -0.93 -54.68 13.29 21.45 0.28 -54.40 16 22 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 C -0.22 -7.09 9.18 22.36 0.21 -6.89 16 27 C -0.03 -0.88 9.08 22.50 0.20 -0.68 16 28 C -0.17 -3.75 5.80 -20.82 -0.12 -3.87 16 29 C 0.29 8.41 13.49 88.33 1.19 9.60 16 30 N -0.46 -15.93 18.54 19.00 0.35 -15.58 16 31 H 0.07 0.46 8.10 -2.39 -0.02 0.44 16 32 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 0.43 8.10 -2.38 -0.02 0.41 16 34 H 0.42 2.19 7.63 -92.71 -0.71 1.48 16 35 H 0.43 0.29 8.95 -92.70 -0.83 -0.54 16 36 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 37 H 0.10 5.03 6.12 -2.91 -0.02 5.01 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 2.17 8.07 -2.39 -0.02 2.15 16 40 H 0.08 2.36 6.18 -2.39 -0.01 2.34 16 41 H 0.01 0.75 8.07 -2.39 -0.02 0.73 16 42 H 0.01 0.73 6.18 -2.38 -0.01 0.72 16 43 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.14 3.96 6.12 -2.91 -0.02 3.94 16 45 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -73.73 400.18 4.50 -69.23 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -0.44 Total: 7.87 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 8.23 Total: 8.44 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -4.46 Total: -126.37 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.85 Total: -5.77 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -73.73 4.50 -69.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020458430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.929 kcal (2) G-P(sol) polarization free energy of solvation -73.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds