Wall clock time and date at job start Tue Mar 31 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35860 * 117.00190 * 2 1 4 4 C 1.38963 * 119.86528 * 0.02562 * 3 2 1 5 5 C 1.37801 * 120.21847 * 179.97438 * 4 3 2 6 6 C 1.39707 * 119.94895 * 0.02562 * 5 4 3 7 7 C 1.47336 * 120.13557 * 179.97438 * 6 5 4 8 8 C 1.50708 * 119.99729 * 359.97438 * 7 6 5 9 9 N 1.29844 * 120.00524 * 179.97438 * 7 6 5 10 10 N 1.40105 * 120.00211 * 180.02562 * 9 7 6 11 11 C 1.38207 * 119.99744 * 179.97438 * 10 9 7 12 12 N 1.31596 * 126.00394 * 0.03171 * 11 10 9 13 13 C 1.33812 * 109.66998 * 179.97438 * 12 11 10 14 14 S 1.76201 * 125.52604 * 180.02562 * 13 12 11 15 15 C 1.76198 * 99.99798 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00125 * 359.97438 * 15 14 13 17 17 C 1.38674 * 119.99865 * 180.02562 * 15 14 13 18 18 N 1.31661 * 119.99704 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47173 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47165 * 119.99545 * 19 17 15 22 22 H 1.48500 * 109.47169 * 239.99899 * 19 17 15 23 23 N 1.31300 * 108.94492 * 359.97438 * 13 12 11 24 24 N 1.35137 * 125.99870 * 179.71388 * 11 10 9 25 25 H 0.97005 * 126.77555 * 359.97250 * 24 11 10 26 26 C 1.40214 * 119.73570 * 0.26585 * 6 5 4 27 27 O 1.35824 * 120.10545 * 179.73016 * 26 6 5 28 28 C 1.42902 * 116.99633 * 180.02562 * 27 26 6 29 29 C 1.38380 * 119.78160 * 359.47416 * 26 6 5 30 30 H 1.08999 * 109.47055 * 299.99766 * 1 2 3 31 31 H 1.09000 * 109.47589 * 59.99489 * 1 2 3 32 32 H 1.08999 * 109.47597 * 179.97438 * 1 2 3 33 33 H 1.08007 * 119.89151 * 359.97438 * 4 3 2 34 34 H 1.08004 * 120.02385 * 179.97438 * 5 4 3 35 35 H 1.08990 * 109.46835 * 270.00048 * 8 7 6 36 36 H 1.08999 * 109.46830 * 30.00320 * 8 7 6 37 37 H 1.08996 * 109.47100 * 149.99877 * 8 7 6 38 38 H 0.96999 * 119.99953 * 0.02562 * 10 9 7 39 39 H 0.97002 * 119.99879 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.47413 * 59.99643 * 28 27 26 41 41 H 1.08992 * 109.47199 * 179.97438 * 28 27 26 42 42 H 1.08997 * 109.47027 * 300.00104 * 28 27 26 43 43 H 1.07998 * 119.97402 * 180.26831 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2863 2.3742 0.0005 5 6 1.9043 3.6058 0.0011 6 6 3.2991 3.6862 0.0005 7 6 3.9642 5.0009 0.0005 8 6 3.1397 6.2625 0.0005 9 7 5.2606 5.0727 0.0005 10 7 5.8930 6.3229 0.0011 11 6 7.2730 6.3992 0.0016 12 7 8.1042 5.3790 0.0011 13 6 9.3656 5.8257 0.0013 14 16 10.8094 4.8157 0.0002 15 6 12.0547 6.0622 0.0019 16 1 11.7747 7.1052 0.0028 17 6 13.3943 5.7038 0.0010 18 7 13.7356 4.4322 -0.0016 19 14 14.7146 7.0252 0.0022 20 1 14.0740 8.3650 0.0034 21 1 15.5600 6.8793 1.2143 22 1 15.5593 6.8821 -1.2107 23 7 9.3529 7.1386 0.0014 24 7 8.0057 7.5347 -0.0033 25 1 7.6677 8.4440 -0.0082 26 6 4.0635 2.5108 -0.0062 27 8 5.4199 2.5803 -0.0123 28 6 6.1328 1.3418 -0.0195 29 6 3.4314 1.2798 -0.0012 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2079 2.3131 0.0005 34 1 1.3109 4.5082 0.0011 35 1 2.9410 6.5665 -1.0270 36 1 2.1960 6.0797 0.5144 37 1 3.6859 7.0535 0.5144 38 1 5.3624 7.1349 0.0018 39 1 14.6727 4.1816 -0.0018 40 1 5.8646 0.7733 -0.9101 41 1 7.2046 1.5396 -0.0244 42 1 5.8729 0.7678 0.8698 43 1 4.0171 0.3725 -0.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020608316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:53 Heat of formation + Delta-G solvation = 99.086211 kcal Electronic energy + Delta-G solvation = -28800.447536 eV Core-core repulsion = 24590.594698 eV Total energy + Delta-G solvation = -4209.852838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.115 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.98797 -40.70710 -39.15253 -37.86688 -36.50093 -33.59244 -32.52409 -31.67987 -30.95431 -30.03861 -29.22995 -27.97525 -27.52301 -26.99891 -25.49517 -23.41320 -22.31171 -22.06511 -21.04463 -19.59066 -18.98107 -18.47667 -17.45634 -17.19733 -16.49755 -16.17009 -16.11237 -15.59068 -15.53316 -15.29657 -15.11449 -14.82071 -14.66550 -14.60023 -14.32689 -14.16090 -13.22749 -12.91214 -12.84320 -12.72600 -12.62365 -12.31593 -12.25333 -11.71960 -11.46707 -11.34483 -11.20274 -11.08807 -10.97027 -10.85262 -10.84660 -10.13608 -10.07409 -9.99659 -9.68303 -9.24565 -9.05675 -8.78094 -8.50903 -8.37454 -7.50182 -6.58871 -6.31486 -4.02633 0.74490 1.20366 2.10622 2.15019 2.68867 2.86420 2.97076 3.23918 3.29880 3.36889 3.39541 3.60359 3.86116 3.86451 4.20061 4.25019 4.39941 4.61003 4.73919 4.76721 4.78205 4.84809 5.04197 5.07087 5.10576 5.14518 5.15865 5.20296 5.26933 5.33587 5.42247 5.53510 5.57870 5.85214 5.92688 5.97561 6.07795 6.25789 6.35626 6.41388 6.81451 7.00648 7.28203 7.41727 7.68146 7.89709 8.11073 8.46523 8.99115 9.19334 10.76481 Molecular weight = 363.12amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002049 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.793591 B =13662.467805 C =15201.489866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.177 3.823 4 C -0.253 4.253 5 C -0.020 4.020 6 C -0.107 4.107 7 C 0.102 3.898 8 C -0.148 4.148 9 N -0.159 5.159 10 N -0.554 5.554 11 C 0.532 3.468 12 N -0.525 5.525 13 C 0.219 3.781 14 S 0.156 5.844 15 C -0.541 4.541 16 H 0.096 0.904 17 C 0.075 3.925 18 N -0.875 5.875 19 Si 0.927 3.073 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.279 1.279 23 N -0.326 5.326 24 N -0.526 5.526 25 H 0.424 0.576 26 C 0.203 3.797 27 O -0.261 6.261 28 C 0.022 3.978 29 C -0.252 4.252 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.390 0.610 39 H 0.271 0.729 40 H 0.053 0.947 41 H 0.112 0.888 42 H 0.053 0.947 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.290 -3.790 -0.062 30.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.130 3.870 4 C -0.272 4.272 5 C -0.041 4.041 6 C -0.111 4.111 7 C -0.089 4.089 8 C -0.207 4.207 9 N 0.033 4.967 10 N -0.288 5.288 11 C 0.163 3.837 12 N -0.263 5.263 13 C -0.168 4.168 14 S 0.384 5.616 15 C -0.690 4.690 16 H 0.114 0.886 17 C -0.134 4.134 18 N -0.511 5.511 19 Si 0.753 3.247 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.205 1.205 23 N -0.162 5.162 24 N -0.250 5.250 25 H 0.267 0.733 26 C 0.152 3.848 27 O -0.170 6.170 28 C -0.073 4.073 29 C -0.271 4.271 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.232 0.768 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.130 0.870 42 H 0.072 0.928 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -28.177 -5.616 -0.065 28.731 hybrid contribution -1.045 3.567 0.012 3.717 sum -29.222 -2.049 -0.053 29.294 Atomic orbital electron populations 1.23088 0.78139 1.04016 1.01568 1.86068 1.21606 1.27103 1.88080 1.18816 0.91524 0.84113 0.92575 1.20946 0.99998 0.91808 1.14453 1.20761 0.91776 0.97516 0.94047 1.17322 0.91690 0.88258 1.13786 1.22833 0.90180 0.94046 1.01871 1.21208 1.00990 0.95168 1.03383 1.75431 1.09165 1.01948 1.10163 1.43831 1.00388 1.04519 1.80021 1.19758 0.83580 0.84769 0.95617 1.70956 0.98295 1.26513 1.30494 1.27344 0.98591 0.93057 0.97809 1.83699 0.85619 1.05405 1.86840 1.23251 0.91718 0.95884 1.58144 0.88561 1.25025 0.98002 0.96481 0.93906 1.69982 1.18473 1.15457 1.47165 0.85966 0.79981 0.80925 0.77814 1.19266 1.20496 1.20502 1.78649 0.89738 1.13159 1.34675 1.47911 1.05065 1.07160 1.64880 0.73308 1.18933 0.84160 0.91795 0.89895 1.86568 1.13144 1.31721 1.85528 1.23228 0.98366 0.85104 1.00633 1.20374 0.92538 0.97851 1.16367 0.92425 0.92431 0.88226 0.85107 0.84574 0.90006 0.89755 0.91674 0.76835 0.91880 0.92830 0.86962 0.92815 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.85 10.49 -19.30 -0.20 -3.05 16 3 C 0.18 1.74 6.69 -39.13 -0.26 1.48 16 4 C -0.25 -2.01 9.01 -39.47 -0.36 -2.37 16 5 C -0.02 -0.17 9.35 -39.19 -0.37 -0.53 16 6 C -0.11 -1.22 5.88 -104.91 -0.62 -1.84 16 7 C 0.10 1.20 7.10 -79.73 -0.57 0.64 16 8 C -0.15 -1.06 9.03 36.01 0.33 -0.74 16 9 N -0.16 -2.49 9.17 35.09 0.32 -2.17 16 10 N -0.55 -8.26 6.26 30.05 0.19 -8.07 16 11 C 0.53 10.27 9.12 -320.75 -2.92 7.35 16 12 N -0.52 -12.33 11.12 -14.13 -0.16 -12.49 16 13 C 0.22 5.59 8.20 -90.81 -0.74 4.85 16 14 S 0.16 4.27 21.89 -107.50 -2.35 1.92 16 15 C -0.54 -15.75 9.36 30.89 0.29 -15.46 16 16 H 0.10 2.83 6.87 -52.49 -0.36 2.47 16 17 C 0.07 2.12 5.49 -17.46 -0.10 2.02 16 18 N -0.88 -25.43 13.22 55.48 0.73 -24.70 16 19 Si 0.93 21.79 29.55 -169.99 -5.02 16.76 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 N -0.33 -7.89 11.51 30.16 0.35 -7.54 16 24 N -0.53 -9.77 7.47 30.04 0.22 -9.54 16 25 H 0.42 5.78 8.96 -182.35 -1.63 4.15 16 26 C 0.20 2.61 6.69 -38.79 -0.26 2.35 16 27 O -0.26 -3.94 8.36 -19.19 -0.16 -4.10 16 28 C 0.02 0.26 9.81 101.05 0.99 1.25 16 29 C -0.25 -2.81 8.96 -39.35 -0.35 -3.16 16 30 H 0.06 0.21 7.65 -51.93 -0.40 -0.18 16 31 H 0.06 0.21 7.65 -51.93 -0.40 -0.18 16 32 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.13 0.69 6.27 -52.48 -0.33 0.36 16 34 H 0.14 0.68 6.35 -52.48 -0.33 0.35 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.42 6.47 -51.93 -0.34 0.08 16 37 H 0.06 0.43 6.35 -51.93 -0.33 0.10 16 38 H 0.39 4.14 6.56 -182.59 -1.20 2.94 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 41 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.05 0.54 7.65 -51.93 -0.40 0.15 16 43 H 0.14 1.43 6.29 -52.49 -0.33 1.09 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -37.63 382.35 -11.11 -48.74 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.84 Total: 1.53 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -3.95 Total: -3.05 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: 1.66 Total: -64.51 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.36 Total: -7.14 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -2.35 Total: 1.92 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.63 -11.11 -48.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020608316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.825 kcal (2) G-P(sol) polarization free energy of solvation -37.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds