Wall clock time and date at job start Tue Mar 31 2020 05:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35860 * 117.00190 * 2 1 4 4 C 1.38963 * 119.86528 * 0.02562 * 3 2 1 5 5 C 1.37801 * 120.21847 * 179.97438 * 4 3 2 6 6 C 1.39707 * 119.94895 * 0.02562 * 5 4 3 7 7 C 1.47336 * 120.13557 * 179.97438 * 6 5 4 8 8 C 1.50708 * 119.99729 * 359.97438 * 7 6 5 9 9 N 1.29844 * 120.00524 * 179.97438 * 7 6 5 10 10 N 1.40105 * 120.00211 * 180.02562 * 9 7 6 11 11 C 1.38207 * 119.99744 * 179.97438 * 10 9 7 12 12 N 1.31596 * 126.00394 * 0.03171 * 11 10 9 13 13 C 1.33812 * 109.66998 * 179.97438 * 12 11 10 14 14 S 1.76201 * 125.52604 * 180.02562 * 13 12 11 15 15 C 1.76198 * 99.99798 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00125 * 359.97438 * 15 14 13 17 17 C 1.38674 * 119.99865 * 180.02562 * 15 14 13 18 18 N 1.31661 * 119.99704 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47173 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47165 * 119.99545 * 19 17 15 22 22 H 1.48500 * 109.47169 * 239.99899 * 19 17 15 23 23 N 1.31300 * 108.94492 * 359.97438 * 13 12 11 24 24 N 1.35137 * 125.99870 * 179.71388 * 11 10 9 25 25 H 0.97005 * 126.77555 * 359.97250 * 24 11 10 26 26 C 1.40214 * 119.73570 * 0.26585 * 6 5 4 27 27 O 1.35824 * 120.10545 * 179.73016 * 26 6 5 28 28 C 1.42902 * 116.99633 * 180.02562 * 27 26 6 29 29 C 1.38380 * 119.78160 * 359.47416 * 26 6 5 30 30 H 1.08999 * 109.47055 * 299.99766 * 1 2 3 31 31 H 1.09000 * 109.47589 * 59.99489 * 1 2 3 32 32 H 1.08999 * 109.47597 * 179.97438 * 1 2 3 33 33 H 1.08007 * 119.89151 * 359.97438 * 4 3 2 34 34 H 1.08004 * 120.02385 * 179.97438 * 5 4 3 35 35 H 1.08990 * 109.46835 * 270.00048 * 8 7 6 36 36 H 1.08999 * 109.46830 * 30.00320 * 8 7 6 37 37 H 1.08996 * 109.47100 * 149.99877 * 8 7 6 38 38 H 0.96999 * 119.99953 * 0.02562 * 10 9 7 39 39 H 0.97002 * 119.99879 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.47413 * 59.99643 * 28 27 26 41 41 H 1.08992 * 109.47199 * 179.97438 * 28 27 26 42 42 H 1.08997 * 109.47027 * 300.00104 * 28 27 26 43 43 H 1.07998 * 119.97402 * 180.26831 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2863 2.3742 0.0005 5 6 1.9043 3.6058 0.0011 6 6 3.2991 3.6862 0.0005 7 6 3.9642 5.0009 0.0005 8 6 3.1397 6.2625 0.0005 9 7 5.2606 5.0727 0.0005 10 7 5.8930 6.3229 0.0011 11 6 7.2730 6.3992 0.0016 12 7 8.1042 5.3790 0.0011 13 6 9.3656 5.8257 0.0013 14 16 10.8094 4.8157 0.0002 15 6 12.0547 6.0622 0.0019 16 1 11.7747 7.1052 0.0028 17 6 13.3943 5.7038 0.0010 18 7 13.7356 4.4322 -0.0016 19 14 14.7146 7.0252 0.0022 20 1 14.0740 8.3650 0.0034 21 1 15.5600 6.8793 1.2143 22 1 15.5593 6.8821 -1.2107 23 7 9.3529 7.1386 0.0014 24 7 8.0057 7.5347 -0.0033 25 1 7.6677 8.4440 -0.0082 26 6 4.0635 2.5108 -0.0062 27 8 5.4199 2.5803 -0.0123 28 6 6.1328 1.3418 -0.0195 29 6 3.4314 1.2798 -0.0012 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2079 2.3131 0.0005 34 1 1.3109 4.5082 0.0011 35 1 2.9410 6.5665 -1.0270 36 1 2.1960 6.0797 0.5144 37 1 3.6859 7.0535 0.5144 38 1 5.3624 7.1349 0.0018 39 1 14.6727 4.1816 -0.0018 40 1 5.8646 0.7733 -0.9101 41 1 7.2046 1.5396 -0.0244 42 1 5.8729 0.7678 0.8698 43 1 4.0171 0.3725 -0.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020608316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:52 Heat of formation + Delta-G solvation = 74.386917 kcal Electronic energy + Delta-G solvation = -28801.518578 eV Core-core repulsion = 24590.594698 eV Total energy + Delta-G solvation = -4210.923880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.115 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.66795 -41.47647 -39.91989 -38.87620 -37.34933 -34.71376 -34.67564 -33.32089 -31.86963 -31.10122 -30.11078 -29.10662 -28.05363 -27.85708 -27.65331 -24.28638 -24.03897 -22.83451 -22.39646 -20.81103 -20.08367 -19.54702 -19.34778 -18.08072 -17.42298 -17.12615 -16.91553 -16.85567 -16.74114 -16.67830 -16.56092 -16.32944 -16.08922 -15.39346 -15.11034 -15.02241 -14.79197 -14.00520 -13.50544 -13.39921 -13.35516 -13.31159 -13.09723 -13.01938 -12.94502 -12.94138 -12.72621 -12.38571 -12.25137 -11.96748 -11.87781 -11.79063 -11.57048 -11.11131 -11.07172 -11.03990 -10.88782 -10.53625 -9.70892 -9.44845 -8.75785 -8.49423 -8.43610 -6.22322 -0.07877 0.45297 0.77169 0.83185 1.05463 1.40151 1.40611 1.51739 1.57382 2.13415 2.16848 2.25888 2.52953 2.58908 2.84786 2.95387 3.09597 3.46332 3.58026 3.87919 4.09744 4.16497 4.18366 4.27324 4.41045 4.41430 4.47425 4.48685 4.55818 4.59177 4.70377 4.79835 4.82697 4.86180 4.95742 5.17160 5.19673 5.30271 5.38136 5.49419 5.52004 5.60847 5.63857 6.25568 6.37513 6.50817 6.55239 6.96989 7.01769 7.48422 8.66270 Molecular weight = 363.12amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002049 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.793591 B =13662.467805 C =15201.489866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.335 6.335 3 C 0.175 3.825 4 C -0.246 4.246 5 C -0.001 4.001 6 C -0.138 4.138 7 C 0.129 3.871 8 C -0.150 4.150 9 N -0.231 5.231 10 N -0.539 5.539 11 C 0.547 3.453 12 N -0.560 5.560 13 C 0.212 3.788 14 S 0.107 5.893 15 C -0.560 4.560 16 H 0.086 0.914 17 C 0.026 3.974 18 N -0.906 5.906 19 Si 1.000 3.000 20 H -0.269 1.269 21 H -0.267 1.267 22 H -0.267 1.267 23 N -0.350 5.350 24 N -0.506 5.506 25 H 0.447 0.553 26 C 0.179 3.821 27 O -0.294 6.294 28 C 0.022 3.978 29 C -0.270 4.270 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.167 0.833 34 H 0.178 0.822 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.410 0.590 39 H 0.279 0.721 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.274 -2.145 -0.064 34.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.248 6.248 3 C 0.128 3.872 4 C -0.264 4.264 5 C -0.021 4.021 6 C -0.142 4.142 7 C -0.061 4.061 8 C -0.209 4.209 9 N -0.039 5.039 10 N -0.275 5.275 11 C 0.178 3.822 12 N -0.300 5.300 13 C -0.177 4.177 14 S 0.336 5.664 15 C -0.709 4.709 16 H 0.104 0.896 17 C -0.180 4.180 18 N -0.542 5.542 19 Si 0.822 3.178 20 H -0.193 1.193 21 H -0.191 1.191 22 H -0.192 1.192 23 N -0.187 5.187 24 N -0.233 5.233 25 H 0.295 0.705 26 C 0.129 3.871 27 O -0.204 6.204 28 C -0.073 4.073 29 C -0.289 4.289 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.184 0.816 34 H 0.195 0.805 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.090 0.910 38 H 0.255 0.745 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -32.263 -3.940 -0.068 32.502 hybrid contribution -0.331 2.928 0.011 2.946 sum -32.594 -1.012 -0.057 32.609 Atomic orbital electron populations 1.23437 0.75771 1.05718 1.02938 1.86056 1.24086 1.26923 1.87728 1.19001 0.91214 0.85312 0.91670 1.21369 1.01652 0.90833 1.12574 1.21213 0.90366 0.99248 0.91236 1.17727 0.93113 0.87598 1.15758 1.23492 0.89812 0.96074 0.96744 1.21396 1.01598 0.92753 1.05195 1.75582 1.11440 1.01804 1.15056 1.43665 0.98452 1.05876 1.79467 1.19785 0.85122 0.83832 0.93463 1.70864 0.97970 1.28588 1.32576 1.26874 0.98618 0.93262 0.98969 1.83565 0.87257 1.07009 1.88599 1.23372 0.92652 0.95461 1.59368 0.89589 1.26020 0.99984 0.98981 0.92999 1.70076 1.19411 1.17306 1.47407 0.84887 0.76805 0.77525 0.78604 1.19283 1.19147 1.19161 1.78467 0.92933 1.12737 1.34602 1.47538 1.03275 1.08324 1.64207 0.70480 1.19293 0.83400 0.93226 0.91176 1.86508 1.14820 1.32789 1.86323 1.23207 0.97225 0.84917 1.01934 1.20435 0.93705 0.97343 1.17459 0.90957 0.90965 0.86651 0.81575 0.80455 0.87996 0.86607 0.90991 0.74453 0.91207 0.91519 0.88953 0.91523 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.21 16 2 O -0.33 -5.39 10.49 -91.97 -0.96 -6.35 16 3 C 0.18 3.12 6.69 22.56 0.15 3.27 16 4 C -0.25 -2.93 9.01 22.34 0.20 -2.73 16 5 C 0.00 -0.01 9.35 22.52 0.21 0.20 16 6 C -0.14 -2.91 5.88 -20.05 -0.12 -3.03 16 7 C 0.13 2.80 7.10 45.25 0.32 3.12 16 8 C -0.15 -1.52 9.03 71.24 0.64 -0.88 16 9 N -0.23 -7.19 9.17 -42.88 -0.39 -7.58 16 10 N -0.54 -15.66 6.26 -58.85 -0.37 -16.03 16 11 C 0.55 21.31 9.12 260.77 2.38 23.69 16 12 N -0.56 -27.46 11.12 -198.62 -2.21 -29.67 16 13 C 0.21 11.31 8.20 180.42 1.48 12.79 16 14 S 0.11 6.23 21.89 -56.49 -1.24 4.99 16 15 C -0.56 -33.83 9.36 67.92 0.64 -33.20 16 16 H 0.09 5.24 6.87 -2.91 -0.02 5.22 16 17 C 0.03 1.49 5.49 84.82 0.47 1.96 16 18 N -0.91 -53.99 13.22 21.63 0.29 -53.70 16 19 Si 1.00 45.16 29.55 68.60 2.03 47.19 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 N -0.35 -17.40 11.51 -58.48 -0.67 -18.07 16 24 N -0.51 -18.68 7.47 -58.87 -0.44 -19.12 16 25 H 0.45 11.61 8.96 -213.11 -1.91 9.70 16 26 C 0.18 4.67 6.69 22.78 0.15 4.82 16 27 O -0.29 -9.50 8.36 -91.57 -0.77 -10.27 16 28 C 0.02 0.59 9.81 113.37 1.11 1.70 16 29 C -0.27 -6.06 8.96 22.42 0.20 -5.86 16 30 H 0.07 0.25 7.65 -2.39 -0.02 0.23 16 31 H 0.07 0.25 7.65 -2.39 -0.02 0.23 16 32 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.17 0.80 6.27 -2.91 -0.02 0.78 16 34 H 0.18 0.62 6.35 -2.91 -0.02 0.60 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.12 0.47 6.47 -2.39 -0.02 0.45 16 37 H 0.07 0.67 6.35 -2.39 -0.02 0.66 16 38 H 0.41 7.84 6.56 -213.32 -1.40 6.45 16 39 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.07 1.51 7.67 -2.38 -0.02 1.49 16 41 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.07 1.51 7.65 -2.39 -0.02 1.49 16 43 H 0.14 2.96 6.29 -2.91 -0.02 2.94 16 Total: -1.00 -87.83 382.35 2.01 -85.82 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -2.20 Total: 15.74 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 8.95 Total: 7.07 kcal Atomic # 7 Polarization: -140.38 SS G_CDS: -3.80 Total: -144.18 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -1.73 Total: -16.62 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.24 Total: 4.99 kcal Total: -87.83 2.01 -85.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020608316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.206 kcal (2) G-P(sol) polarization free energy of solvation -87.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds