Wall clock time and date at job start Tue Mar 31 2020 05:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35951 * 116.99963 * 2 1 4 4 C 1.38715 * 119.91702 * 359.97438 * 3 2 1 5 5 C 1.37912 * 120.15766 * 179.97438 * 4 3 2 6 6 C 1.39712 * 119.99414 * 0.02941 * 5 4 3 7 7 C 1.47423 * 120.09186 * 179.97438 * 6 5 4 8 8 C 1.50708 * 119.99578 * 359.97438 * 7 6 5 9 9 N 1.29824 * 120.00406 * 179.97438 * 7 6 5 10 10 N 1.40103 * 119.99747 * 180.02562 * 9 7 6 11 11 C 1.38245 * 119.99503 * 179.97438 * 10 9 7 12 12 N 1.31582 * 125.99963 * 0.02562 * 11 10 9 13 13 C 1.33808 * 109.67000 * 179.97438 * 12 11 10 14 14 S 1.76205 * 125.52716 * 180.02562 * 13 12 11 15 15 C 1.76200 * 99.99659 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00590 * 359.97438 * 15 14 13 17 17 C 1.38678 * 119.99673 * 180.02562 * 15 14 13 18 18 N 1.31658 * 119.99989 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99788 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47397 * 59.99724 * 19 17 15 21 21 H 1.48503 * 109.47072 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47230 * 299.99894 * 19 17 15 23 23 N 1.31306 * 108.94440 * 0.02562 * 13 12 11 24 24 N 1.35121 * 125.99534 * 179.70913 * 11 10 9 25 25 H 0.97009 * 126.77755 * 0.03147 * 24 11 10 26 26 C 1.39724 * 119.82724 * 0.24535 * 6 5 4 27 27 C 1.38251 * 119.84148 * 359.47598 * 26 6 5 28 28 O 1.35989 * 119.99652 * 180.29332 * 27 26 6 29 29 C 1.42907 * 117.00381 * 0.23589 * 28 27 26 30 30 H 1.08993 * 109.46990 * 300.00262 * 1 2 3 31 31 H 1.08996 * 109.46508 * 60.00211 * 1 2 3 32 32 H 1.08994 * 109.46930 * 179.97438 * 1 2 3 33 33 H 1.08001 * 119.92317 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.00416 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.46665 * 270.00104 * 8 7 6 36 36 H 1.08996 * 109.47100 * 30.00275 * 8 7 6 37 37 H 1.08994 * 109.46923 * 150.00315 * 8 7 6 38 38 H 0.96995 * 120.00300 * 0.27052 * 10 9 7 39 39 H 0.97003 * 119.99635 * 180.02562 * 18 17 15 40 40 H 1.08005 * 120.08131 * 179.74878 * 26 6 5 41 41 H 1.09001 * 109.46639 * 59.99793 * 29 28 27 42 42 H 1.08997 * 109.47282 * 179.97438 * 29 28 27 43 43 H 1.09003 * 109.46710 * 300.00081 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2891 2.3736 -0.0005 5 6 1.9100 3.6050 0.0000 6 6 3.3049 3.6839 0.0005 7 6 3.9709 4.9991 0.0005 8 6 3.1468 6.2609 -0.0006 9 7 5.2672 5.0704 0.0014 10 7 5.9000 6.3204 0.0019 11 6 7.2803 6.3962 0.0034 12 7 8.1110 5.3757 0.0040 13 6 9.3725 5.8218 0.0050 14 16 10.8159 4.8112 0.0054 15 6 12.0617 6.0572 0.0075 16 1 11.7822 7.1004 0.0077 17 6 13.4013 5.6983 0.0078 18 7 13.7421 4.4266 0.0070 19 14 14.7220 7.0193 0.0107 20 1 14.5762 7.8624 1.2243 21 1 16.0621 6.3794 0.0112 22 1 14.5778 7.8662 -1.2006 23 7 9.3604 7.1348 0.0056 24 7 8.0133 7.5313 -0.0014 25 1 7.6756 8.4407 -0.0062 26 6 4.0672 2.5129 -0.0048 27 6 3.4375 1.2821 0.0005 28 8 4.1763 0.1404 0.0014 29 6 5.5978 0.2875 0.0020 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2107 2.3141 -0.0014 34 1 1.3181 4.5084 -0.0008 35 1 2.9490 6.5647 -1.0286 36 1 2.2027 6.0787 0.5126 37 1 3.6930 7.0519 0.5132 38 1 5.3696 7.1325 0.0056 39 1 14.6791 4.1757 0.0076 40 1 5.1458 2.5691 -0.0086 41 1 5.9059 0.8365 0.8918 42 1 6.0650 -0.6973 0.0031 43 1 5.9067 0.8355 -0.8882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020608317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:56 Heat of formation + Delta-G solvation = 69.993141 kcal Electronic energy + Delta-G solvation = -28408.136010 eV Core-core repulsion = 24197.021602 eV Total energy + Delta-G solvation = -4211.114409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.115 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.74274 -41.54770 -39.46601 -39.30475 -37.61900 -34.69891 -34.68411 -33.38255 -31.64524 -31.42607 -30.22476 -29.19659 -28.05794 -27.88523 -27.66588 -24.31935 -24.10318 -22.96945 -22.45294 -20.92887 -20.21243 -19.48661 -19.24542 -18.18647 -17.76103 -17.23688 -17.02901 -16.92230 -16.77726 -16.73567 -16.59947 -16.12657 -15.80740 -15.50381 -15.33270 -15.22266 -14.81950 -14.02812 -13.55835 -13.43234 -13.39204 -13.33233 -13.18088 -13.03295 -12.96425 -12.94128 -12.76465 -12.21519 -12.19113 -12.06286 -12.00543 -11.97864 -11.71312 -11.20769 -11.13984 -11.12119 -11.05423 -10.59854 -9.86033 -9.38985 -8.76044 -8.54247 -8.44506 -6.24128 -0.23202 0.36598 0.71491 0.72219 1.01161 1.38801 1.39474 1.45380 1.53416 2.04580 2.15245 2.34393 2.36770 2.51179 2.80005 2.94635 3.05390 3.32831 3.54215 3.87453 4.01425 4.05617 4.16927 4.28904 4.34462 4.36126 4.44828 4.49719 4.50345 4.63280 4.70133 4.74373 4.75651 4.83035 4.90466 5.12139 5.14341 5.25307 5.31118 5.48339 5.51408 5.55443 5.65802 6.09567 6.23516 6.43914 6.59820 6.84266 7.00399 7.36081 8.64790 Molecular weight = 363.12amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.001987 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.565633 B =14089.120657 C =15899.934936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.333 6.333 3 C 0.102 3.898 4 C -0.169 4.169 5 C -0.070 4.070 6 C -0.057 4.057 7 C 0.136 3.864 8 C -0.153 4.153 9 N -0.254 5.254 10 N -0.533 5.533 11 C 0.546 3.454 12 N -0.567 5.567 13 C 0.213 3.787 14 S 0.108 5.892 15 C -0.562 4.562 16 H 0.087 0.913 17 C 0.027 3.973 18 N -0.905 5.905 19 Si 1.000 3.000 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.266 1.266 23 N -0.347 5.347 24 N -0.502 5.502 25 H 0.449 0.551 26 C -0.149 4.149 27 C 0.067 3.933 28 O -0.327 6.327 29 C 0.024 3.976 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.416 0.584 39 H 0.279 0.721 40 H 0.128 0.872 41 H 0.053 0.947 42 H 0.120 0.880 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.659 0.019 -0.076 33.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.055 3.945 4 C -0.188 4.188 5 C -0.090 4.090 6 C -0.059 4.059 7 C -0.054 4.054 8 C -0.212 4.212 9 N -0.061 5.061 10 N -0.269 5.269 11 C 0.176 3.824 12 N -0.307 5.307 13 C -0.176 4.176 14 S 0.337 5.663 15 C -0.710 4.710 16 H 0.105 0.895 17 C -0.179 4.179 18 N -0.541 5.541 19 Si 0.821 3.179 20 H -0.191 1.191 21 H -0.193 1.193 22 H -0.191 1.191 23 N -0.184 5.184 24 N -0.230 5.230 25 H 0.297 0.703 26 C -0.170 4.170 27 C 0.021 3.979 28 O -0.242 6.242 29 C -0.070 4.070 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.194 0.806 34 H 0.194 0.806 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.093 0.907 38 H 0.262 0.738 39 H 0.088 0.912 40 H 0.146 0.854 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -31.841 -2.125 -0.077 31.912 hybrid contribution -0.028 3.359 0.017 3.359 sum -31.869 1.234 -0.060 31.893 Atomic orbital electron populations 1.23425 0.76067 1.05610 1.02833 1.86157 1.23709 1.26262 1.88566 1.18722 0.88772 0.86501 1.00495 1.21350 1.01578 0.89955 1.05899 1.21344 0.91497 0.99060 0.97116 1.18028 0.93518 0.88697 1.05695 1.23577 0.89604 0.96417 0.95774 1.21445 1.01746 0.92502 1.05529 1.75112 1.11837 1.03632 1.15528 1.43472 0.98380 1.05530 1.79494 1.19764 0.85034 0.83956 0.93597 1.70789 0.98231 1.28834 1.32879 1.26859 0.98492 0.93304 0.98953 1.83622 0.87303 1.06950 1.88469 1.23300 0.92604 0.95448 1.59683 0.89477 1.26022 1.00002 0.98969 0.92941 1.70061 1.19568 1.17345 1.47146 0.84987 0.76124 0.77460 0.79319 1.19111 1.19274 1.19095 1.78492 0.92899 1.12632 1.34377 1.47521 1.03223 1.08367 1.63872 0.70278 1.21374 1.00923 0.91046 1.03611 1.18486 0.89358 0.86055 1.03962 1.86098 1.19980 1.28725 1.89371 1.23200 0.77264 1.05016 1.01534 0.90914 0.90922 0.86969 0.80634 0.80553 0.87615 0.86368 0.90692 0.73849 0.91165 0.85377 0.92858 0.86172 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -6.61 10.27 -78.94 -0.81 -7.42 16 3 C 0.10 2.08 6.70 22.64 0.15 2.23 16 4 C -0.17 -2.07 9.02 22.31 0.20 -1.86 16 5 C -0.07 -0.80 9.36 22.55 0.21 -0.59 16 6 C -0.06 -1.09 5.87 -20.14 -0.12 -1.21 16 7 C 0.14 2.59 7.10 45.28 0.32 2.91 16 8 C -0.15 -1.19 9.03 71.24 0.64 -0.55 16 9 N -0.25 -7.10 10.43 -42.83 -0.45 -7.55 16 10 N -0.53 -13.99 6.27 -58.84 -0.37 -14.36 16 11 C 0.55 20.00 9.12 260.76 2.38 22.38 16 12 N -0.57 -26.72 11.12 -198.60 -2.21 -28.93 16 13 C 0.21 11.05 8.20 180.41 1.48 12.53 16 14 S 0.11 6.17 21.89 -56.49 -1.24 4.94 16 15 C -0.56 -33.41 9.36 67.93 0.64 -32.78 16 16 H 0.09 5.18 6.87 -2.91 -0.02 5.16 16 17 C 0.03 1.52 5.49 84.82 0.47 1.98 16 18 N -0.91 -53.49 13.22 21.63 0.29 -53.20 16 19 Si 1.00 44.55 29.55 68.60 2.03 46.58 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 N -0.35 -16.66 11.51 -58.48 -0.67 -17.34 16 24 N -0.50 -17.55 7.47 -58.86 -0.44 -17.99 16 25 H 0.45 10.73 8.96 -213.10 -1.91 8.82 16 26 C -0.15 -3.80 8.56 22.63 0.19 -3.60 16 27 C 0.07 1.71 6.69 22.53 0.15 1.86 16 28 O -0.33 -9.16 10.27 -79.37 -0.82 -9.97 16 29 C 0.02 0.59 9.81 113.37 1.11 1.71 16 30 H 0.07 0.34 7.65 -2.39 -0.02 0.32 16 31 H 0.07 0.34 7.65 -2.39 -0.02 0.32 16 32 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.18 0.76 6.27 -2.91 -0.02 0.74 16 34 H 0.18 0.45 6.34 -2.91 -0.02 0.43 16 35 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.12 0.25 6.47 -2.39 -0.02 0.24 16 37 H 0.07 0.51 6.34 -2.39 -0.02 0.50 16 38 H 0.42 6.78 6.55 -213.32 -1.40 5.39 16 39 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.13 3.87 5.78 -2.91 -0.02 3.85 16 41 H 0.05 1.33 7.67 -2.39 -0.02 1.31 16 42 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 1.33 7.65 -2.39 -0.02 1.31 16 Total: -1.00 -87.00 384.40 2.06 -84.95 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -2.19 Total: 14.07 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 8.94 Total: 6.24 kcal Atomic # 7 Polarization: -135.52 SS G_CDS: -3.85 Total: -139.37 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -1.63 Total: -17.40 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -1.24 Total: 4.94 kcal Total: -87.00 2.06 -84.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020608317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.940 kcal (2) G-P(sol) polarization free energy of solvation -87.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds