Wall clock time and date at job start Tue Mar 31 2020 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47028 * 2 1 4 4 C 1.37414 * 122.44172 * 265.02216 * 3 2 1 5 5 C 1.36753 * 113.28746 * 180.02562 * 4 3 2 6 6 C 1.46396 * 125.46001 * 179.97438 * 5 4 3 7 7 O 1.21624 * 120.00223 * 359.97438 * 6 5 4 8 8 O 1.34897 * 119.99416 * 180.02562 * 6 5 4 9 9 C 1.45206 * 116.99699 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47087 * 179.97438 * 9 8 6 11 11 O 1.21278 * 119.99988 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99792 * 179.97438 * 10 9 8 13 13 C 1.46508 * 119.99701 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.46892 * 90.00541 * 13 12 10 15 15 H 1.08006 * 120.00254 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00267 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00383 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99679 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47225 * 89.99857 * 18 16 14 20 20 H 1.48503 * 109.47112 * 210.00115 * 18 16 14 21 21 H 1.48502 * 109.46985 * 329.99670 * 18 16 14 22 22 C 1.46501 * 120.00416 * 0.02562 * 12 10 9 23 23 C 1.52998 * 109.47206 * 89.99191 * 22 12 10 24 24 C 1.47206 * 109.46552 * 180.02562 * 23 22 12 25 25 N 9.20063 * 140.79961 * 153.98403 * 4 1 2 26 26 S 1.75830 * 109.07340 * 0.02562 * 5 4 3 27 27 C 1.33852 * 122.44834 * 84.73656 * 3 2 1 28 28 C 1.50701 * 124.51723 * 359.95171 * 27 3 2 29 29 H 1.08998 * 109.47097 * 60.00441 * 1 2 3 30 30 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46739 * 300.00185 * 1 2 3 32 32 H 1.08996 * 109.47547 * 239.99834 * 2 1 3 33 33 H 1.08998 * 109.47097 * 119.99559 * 2 1 3 34 34 H 1.08006 * 123.35479 * 0.02867 * 4 3 2 35 35 H 1.09001 * 109.46884 * 299.99956 * 9 8 6 36 36 H 1.09004 * 109.46911 * 59.99700 * 9 8 6 37 37 H 1.09000 * 109.46630 * 210.00054 * 13 12 10 38 38 H 1.08995 * 109.47014 * 330.00055 * 13 12 10 39 39 H 0.97007 * 119.99964 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.46854 * 210.00239 * 22 12 10 41 41 H 1.09005 * 109.46427 * 329.99338 * 22 12 10 42 42 H 1.08994 * 109.47630 * 300.00148 * 23 22 12 43 43 H 1.09000 * 109.46866 * 60.00845 * 23 22 12 44 44 H 1.09001 * 109.47092 * 90.00236 * 28 27 3 45 45 H 1.09002 * 109.47481 * 210.00212 * 28 27 3 46 46 H 1.08999 * 109.47483 * 330.00870 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3729 2.0823 -1.1553 5 6 2.8056 3.3613 -0.9385 6 6 3.2342 4.3004 -1.9767 7 8 3.2232 3.9621 -3.1448 8 8 3.6424 5.5405 -1.6374 9 6 4.0538 6.4180 -2.7187 10 6 4.4730 7.7502 -2.1527 11 8 4.4298 7.9413 -0.9559 12 7 4.8968 8.7291 -2.9766 13 6 5.3038 10.0245 -2.4263 14 6 6.7775 9.9963 -2.1126 15 1 7.3533 9.1027 -2.3035 16 6 7.3908 11.1112 -1.5818 17 7 8.6768 11.0865 -1.3076 18 14 6.3947 12.6565 -1.2510 19 1 5.8475 12.6068 0.1286 20 1 7.2685 13.8488 -1.3943 21 1 5.2765 12.7425 -2.2243 22 6 4.9496 8.4981 -4.4223 23 6 3.6136 8.8979 -5.0517 24 6 3.6666 8.6652 -6.5043 25 7 3.7037 8.4868 -7.6255 26 16 2.7661 3.6966 0.7871 27 6 2.1740 2.1325 1.1248 28 6 1.8565 1.6193 2.5057 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3055 1.6365 -2.1368 35 1 4.8921 5.9693 -3.2518 36 1 3.2207 6.5617 -3.4068 37 1 5.1027 10.8085 -3.1563 38 1 4.7418 10.2245 -1.5141 39 1 9.1081 11.8708 -0.9338 40 1 5.7498 9.0971 -4.8569 41 1 5.1405 7.4423 -4.6147 42 1 2.8135 8.2988 -4.6171 43 1 3.4228 9.9536 -4.8592 44 1 2.7445 1.1539 2.9334 45 1 1.5410 2.4491 3.1381 46 1 1.0546 0.8837 2.4445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023890755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:55 Heat of formation + Delta-G solvation = -64.885259 kcal Electronic energy + Delta-G solvation = -29174.128781 eV Core-core repulsion = 24962.987287 eV Total energy + Delta-G solvation = -4211.141494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.60259 -39.42582 -38.90765 -36.99198 -36.38201 -35.38864 -33.33931 -32.87975 -31.89905 -31.11608 -29.79171 -28.00819 -26.88374 -24.30300 -24.20815 -23.91041 -22.35662 -20.93365 -19.11201 -18.70350 -18.58240 -17.85836 -16.94792 -16.84432 -16.75978 -16.63439 -16.09453 -15.62083 -14.99979 -14.81600 -14.67791 -14.49272 -14.36736 -14.00304 -13.77745 -13.61186 -13.42107 -13.13109 -12.87219 -12.83887 -12.69477 -12.55896 -12.53579 -12.37795 -12.29477 -11.99954 -11.87814 -11.74650 -11.65825 -11.36545 -11.15928 -11.07120 -10.91138 -10.75875 -10.73037 -10.61244 -10.26876 -9.64994 -9.28161 -8.96161 -8.68177 -8.66351 -8.05448 -6.15578 -4.16068 0.13407 1.21337 1.68532 1.92208 2.25013 2.64849 2.72495 2.74855 3.01010 3.23842 3.28893 3.31985 3.49597 4.03185 4.32467 4.38801 4.52490 4.66726 4.68270 4.72726 4.87101 4.88614 4.92930 4.99411 5.05042 5.12563 5.12979 5.17584 5.18568 5.24777 5.35145 5.45138 5.49440 5.54581 5.63598 5.65753 5.83852 5.93833 5.98493 6.10336 6.18367 6.49467 6.77604 7.04751 7.48806 7.50801 7.53733 7.88786 8.35460 8.63805 8.87716 9.42964 10.97472 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.002320 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.572813 B =12065.353902 C =14140.415471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C -0.129 4.129 4 C -0.035 4.035 5 C -0.266 4.266 6 C 0.541 3.459 7 O -0.502 6.502 8 O -0.326 6.326 9 C 0.049 3.951 10 C 0.512 3.488 11 O -0.507 6.507 12 N -0.587 5.587 13 C 0.217 3.783 14 C -0.534 4.534 15 H 0.076 0.924 16 C 0.074 3.926 17 N -0.894 5.894 18 Si 0.875 3.125 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.111 3.889 23 C -0.051 4.051 24 C 0.215 3.785 25 N -0.439 5.439 26 S 0.271 5.729 27 C -0.201 4.201 28 C -0.088 4.088 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.037 0.963 38 H 0.042 0.958 39 H 0.266 0.734 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.858 -19.121 3.487 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 C -0.141 4.141 4 C -0.069 4.069 5 C -0.385 4.385 6 C 0.385 3.615 7 O -0.392 6.392 8 O -0.241 6.241 9 C -0.028 4.028 10 C 0.297 3.703 11 O -0.381 6.381 12 N -0.320 5.320 13 C 0.097 3.903 14 C -0.573 4.573 15 H 0.094 0.906 16 C -0.129 4.129 17 N -0.532 5.532 18 Si 0.702 3.298 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.189 1.189 22 C -0.015 4.015 23 C -0.093 4.093 24 C -0.104 4.104 25 N -0.116 5.116 26 S 0.542 5.458 27 C -0.321 4.321 28 C -0.146 4.146 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.171 0.829 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.124 0.876 43 H 0.136 0.864 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.268 -17.901 3.130 24.390 hybrid contribution -0.581 -0.260 -0.559 0.847 sum -16.849 -18.160 2.572 24.906 Atomic orbital electron populations 1.21767 0.94794 1.01695 1.02333 1.20228 0.95960 0.91014 1.02978 1.18568 1.05746 0.98655 0.91137 1.20576 0.95182 0.91090 1.00066 1.23388 1.18790 0.98778 0.97500 1.19644 0.74169 0.80606 0.87095 1.90887 1.51432 1.77576 1.19292 1.86638 1.75589 1.23120 1.38799 1.22981 1.01981 0.89470 0.88393 1.19712 0.78893 0.84455 0.87241 1.90743 1.52352 1.80566 1.14409 1.47802 1.64077 1.15223 1.04908 1.19791 0.96921 0.78595 0.95003 1.21282 0.91707 1.01041 1.43254 0.90560 1.24853 0.94817 0.98579 0.94656 1.69890 1.09751 1.30140 1.43372 0.86873 0.80324 0.82991 0.79608 1.19839 1.21073 1.18946 1.21442 0.95681 1.02662 0.81672 1.19881 1.01505 1.05931 0.81958 1.28977 0.93319 0.93111 0.94948 1.81221 1.08388 1.09115 1.12871 1.83713 1.56911 1.08109 0.97042 1.24390 1.06500 1.00662 1.00562 1.20439 1.02668 1.01680 0.89844 0.92425 0.92328 0.92553 0.90820 0.90872 0.82913 0.88040 0.88411 0.94560 0.94031 0.92441 0.87891 0.90231 0.87552 0.86377 0.90206 0.90851 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.82 37.16 0.37 -0.45 16 2 C -0.06 -0.38 5.54 -27.88 -0.15 -0.54 16 3 C -0.13 -1.11 5.03 -106.46 -0.54 -1.65 16 4 C -0.04 -0.36 9.78 -40.42 -0.40 -0.76 16 5 C -0.27 -3.28 6.45 -36.84 -0.24 -3.52 16 6 C 0.54 7.84 7.92 34.01 0.27 8.11 16 7 O -0.50 -7.83 16.64 -19.36 -0.32 -8.15 16 8 O -0.33 -5.13 9.61 -47.72 -0.46 -5.59 16 9 C 0.05 0.70 4.51 36.00 0.16 0.86 16 10 C 0.51 9.27 7.75 -10.99 -0.09 9.19 16 11 O -0.51 -11.51 16.08 -14.10 -0.23 -11.74 16 12 N -0.59 -10.15 2.46 -175.06 -0.43 -10.58 16 13 C 0.22 4.63 4.23 -5.19 -0.02 4.61 16 14 C -0.53 -14.19 9.94 -34.44 -0.34 -14.54 16 15 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 18 Si 0.88 20.24 27.47 -169.99 -4.67 15.57 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 22 C 0.11 1.40 5.17 -4.04 -0.02 1.37 16 23 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 24 C 0.21 2.51 15.43 -20.76 -0.32 2.19 16 25 N -0.44 -6.38 18.54 42.15 0.78 -5.60 16 26 S 0.27 2.90 22.87 -107.50 -2.46 0.44 16 27 C -0.20 -1.71 6.28 -35.85 -0.22 -1.94 16 28 C -0.09 -0.50 9.71 36.01 0.35 -0.15 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.31 7.21 -51.93 -0.37 -0.07 16 32 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 33 H 0.07 0.38 7.48 -51.93 -0.39 -0.01 16 34 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.10 1.32 7.40 -51.93 -0.38 0.93 16 36 H 0.10 1.09 7.18 -51.93 -0.37 0.72 16 37 H 0.04 0.71 7.13 -51.93 -0.37 0.34 16 38 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 40 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 42 H 0.11 0.81 7.22 -51.93 -0.38 0.44 16 43 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.36 6.37 -51.93 -0.33 0.03 16 LS Contribution 412.02 15.07 6.21 6.21 Total: -1.00 -35.34 412.02 -8.52 -43.87 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.25 Total: -2.78 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.47 Total: 4.06 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 1.12 Total: -41.88 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.01 Total: -25.48 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.46 Total: 0.44 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.34 -8.52 -43.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023890755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.020 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds