Wall clock time and date at job start Tue Mar 31 2020 06:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47105 * 2 1 4 4 O 1.45204 * 109.46671 * 240.00256 * 2 1 3 5 5 C 1.34807 * 116.99784 * 90.00219 * 4 2 1 6 6 O 1.21531 * 120.00317 * 359.97438 * 5 4 2 7 7 C 1.47288 * 119.99999 * 179.97438 * 5 4 2 8 8 C 1.39294 * 120.28397 * 354.20539 * 7 5 4 9 9 C 1.38202 * 120.08057 * 179.72510 * 8 7 5 10 10 C 1.38835 * 120.68703 * 0.02562 * 9 8 7 11 11 C 1.37602 * 120.58182 * 359.97438 * 10 9 8 12 12 C 1.40706 * 119.88571 * 359.97438 * 11 10 9 13 13 C 1.40859 * 120.32955 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99876 * 145.81154 * 13 12 11 15 15 C 1.40299 * 120.00056 * 325.81518 * 13 12 11 16 16 N 1.30611 * 119.99649 * 350.76181 * 15 13 12 17 17 Si 1.86794 * 120.00010 * 170.76547 * 15 13 12 18 18 H 1.48497 * 109.47623 * 89.99514 * 17 15 13 19 19 H 1.48499 * 109.47108 * 210.00095 * 17 15 13 20 20 H 1.48509 * 109.47094 * 329.99634 * 17 15 13 21 21 C 1.50693 * 109.47293 * 120.00656 * 2 1 3 22 22 N 1.29836 * 118.31706 * 14.99498 * 21 2 1 23 23 C 1.35665 * 121.61686 * 180.02562 * 22 21 2 24 24 C 1.39642 * 121.64364 * 179.97438 * 23 22 21 25 25 C 1.37659 * 119.68305 * 179.97438 * 24 23 22 26 26 C 1.38881 * 120.82173 * 0.04862 * 25 24 23 27 27 C 1.37763 * 120.57039 * 359.95008 * 26 25 24 28 28 C 1.39335 * 119.51435 * 0.02562 * 27 26 25 29 29 C 1.47052 * 121.94065 * 179.97438 * 28 27 26 30 30 O 1.21733 * 121.29602 * 0.04233 * 29 28 27 31 31 N 1.35343 * 117.40791 * 179.76265 * 29 28 27 32 32 H 0.96998 * 119.69595 * 180.24365 * 31 29 28 33 33 H 1.09000 * 109.47402 * 59.99241 * 1 2 3 34 34 H 1.08994 * 109.47415 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47050 * 299.99768 * 1 2 3 36 36 H 1.07994 * 119.96105 * 359.73844 * 8 7 5 37 37 H 1.08000 * 119.65455 * 180.02562 * 9 8 7 38 38 H 1.08004 * 119.70721 * 179.97438 * 10 9 8 39 39 H 1.08007 * 120.05305 * 180.02562 * 11 10 9 40 40 H 0.97005 * 119.99757 * 179.97438 * 16 15 13 41 41 H 1.08000 * 120.15394 * 359.97438 * 24 23 22 42 42 H 1.08004 * 119.58788 * 179.97438 * 25 24 23 43 43 H 1.08007 * 119.71595 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.24276 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2179 0.0673 -2.2859 6 8 1.9969 1.2620 -2.2551 7 6 2.7086 -0.5591 -3.5253 8 6 3.0782 -1.9021 -3.5349 9 6 3.5328 -2.4871 -4.7016 10 6 3.6276 -1.7493 -5.8739 11 6 3.2699 -0.4208 -5.8959 12 6 2.8030 0.1991 -4.7222 13 6 2.4338 1.5584 -4.7342 14 1 1.6209 1.9027 -4.1119 15 6 3.1219 2.4650 -5.5545 16 7 4.2134 2.0924 -6.1675 17 14 2.4771 4.2048 -5.7700 18 1 3.0660 5.0836 -4.7279 19 1 2.8545 4.7096 -7.1145 20 1 0.9978 4.2043 -5.6388 21 6 2.0324 -0.7105 1.2303 22 7 1.1968 -1.4410 1.9040 23 6 1.5770 -2.1093 3.0217 24 6 0.6786 -2.8947 3.7470 25 6 1.1081 -3.5560 4.8753 26 6 2.4252 -3.4515 5.3034 27 6 3.3301 -2.6827 4.6048 28 6 2.9158 -2.0056 3.4597 29 6 3.8363 -1.1703 2.6740 30 8 5.0027 -1.0389 2.9967 31 7 3.3376 -0.5578 1.5749 32 1 3.9165 -0.0017 1.0304 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 -0.3633 0.5138 0.8900 36 1 3.0093 -2.4869 -2.6297 37 1 3.8171 -3.5290 -4.7014 38 1 3.9853 -2.2224 -6.7766 39 1 3.3467 0.1450 -6.8127 40 1 4.6889 2.7191 -6.7350 41 1 -0.3482 -2.9829 3.4241 42 1 0.4119 -4.1628 5.4353 43 1 2.7428 -3.9777 6.1915 44 1 4.3531 -2.6055 4.9422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023969923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:34 Heat of formation + Delta-G solvation = -51.411116 kcal Electronic energy + Delta-G solvation = -31445.838161 eV Core-core repulsion = 27099.836999 eV Total energy + Delta-G solvation = -4346.001162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.77260 -39.78215 -38.58398 -38.04522 -37.26425 -35.57198 -33.86808 -33.83319 -32.34080 -31.47039 -30.19666 -29.73737 -29.23410 -25.87518 -25.49784 -24.74476 -23.31117 -22.24140 -21.56123 -21.01814 -19.82889 -19.47146 -19.01770 -17.88806 -17.49840 -17.03588 -16.13940 -15.95463 -15.81836 -15.38396 -15.26947 -15.16853 -14.93987 -14.41084 -14.19710 -13.97929 -13.76671 -13.43093 -13.06269 -12.88086 -12.77963 -12.63308 -12.37102 -12.26196 -12.09100 -11.89763 -11.75597 -11.24804 -11.20579 -11.15100 -10.81614 -10.72665 -10.59677 -10.54366 -10.34874 -10.25582 -10.11041 -9.82390 -9.43521 -9.43062 -8.99889 -8.31579 -7.76608 -7.54477 -6.98730 -4.60338 0.21949 0.54348 1.88619 2.06082 2.39318 2.52071 2.70820 3.00016 3.05919 3.12614 3.16672 3.64954 3.73527 3.82818 3.90141 3.99655 4.33109 4.49710 4.57540 4.65536 4.91528 4.96468 5.03987 5.10382 5.31538 5.43976 5.61701 5.62696 5.75651 5.88155 5.92250 6.03361 6.04197 6.07767 6.17896 6.24995 6.27868 6.33684 6.46389 6.51945 6.81295 6.93458 7.02821 7.08055 7.33360 7.50970 7.51329 7.63129 7.78597 7.82932 8.02410 8.44389 8.59159 8.66428 8.86040 9.95545 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.002441 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.461658 B =11465.893676 C =12002.338560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.130 3.870 3 H 0.109 0.891 4 O -0.357 6.357 5 C 0.506 3.494 6 O -0.509 6.509 7 C -0.251 4.251 8 C -0.037 4.037 9 C -0.245 4.245 10 C -0.089 4.089 11 C -0.147 4.147 12 C 0.148 3.852 13 C -0.414 4.414 14 H 0.106 0.894 15 C 0.070 3.930 16 N -0.783 5.783 17 Si 0.919 3.081 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.257 1.257 21 C 0.413 3.587 22 N -0.501 5.501 23 C 0.158 3.842 24 C -0.109 4.109 25 C -0.074 4.074 26 C -0.142 4.142 27 C -0.040 4.040 28 C -0.199 4.199 29 C 0.551 3.449 30 O -0.512 6.512 31 N -0.644 5.644 32 H 0.423 0.577 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.286 0.714 41 H 0.141 0.859 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.730 -6.352 15.286 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.072 3.928 3 H 0.127 0.873 4 O -0.276 6.276 5 C 0.357 3.643 6 O -0.399 6.399 7 C -0.254 4.254 8 C -0.055 4.055 9 C -0.265 4.265 10 C -0.108 4.108 11 C -0.166 4.166 12 C 0.144 3.856 13 C -0.442 4.442 14 H 0.124 0.876 15 C -0.150 4.150 16 N -0.407 5.407 17 Si 0.743 3.257 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.181 1.181 21 C 0.144 3.856 22 N -0.224 5.224 23 C 0.048 3.952 24 C -0.128 4.128 25 C -0.094 4.094 26 C -0.160 4.160 27 C -0.060 4.060 28 C -0.204 4.204 29 C 0.344 3.656 30 O -0.386 6.386 31 N -0.287 5.287 32 H 0.263 0.737 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.159 0.841 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.793 -6.121 15.395 17.550 hybrid contribution 1.070 1.078 -0.088 1.521 sum -4.723 -5.043 15.307 16.794 Atomic orbital electron populations 1.21940 0.91075 1.04402 1.02933 1.21290 0.96726 0.95538 0.79216 0.87328 1.86786 1.78890 1.42362 1.19513 1.21517 0.75126 0.85185 0.82472 1.90750 1.50197 1.15768 1.83168 1.18675 1.21113 0.95658 0.89968 1.20823 0.94634 0.93352 0.96695 1.20375 1.13256 0.98817 0.94006 1.20879 0.98528 0.94794 0.96572 1.21321 1.03864 0.93078 0.98328 1.17440 0.86771 0.92718 0.88646 1.20216 1.13846 0.92122 1.17983 0.87610 1.26166 0.93920 1.02156 0.92781 1.69698 1.12280 1.37526 1.21197 0.86110 0.80766 0.80600 0.78202 1.19140 1.20090 1.18116 1.22612 0.79673 0.89758 0.93588 1.68534 1.32793 1.12070 1.09010 1.18865 0.90835 0.94333 0.91119 1.20866 0.99810 0.97163 0.94950 1.21303 0.95959 0.96911 0.95198 1.21184 0.93451 1.00464 1.00939 1.21016 1.00287 0.92842 0.91831 1.20574 0.94411 1.05026 1.00437 1.18415 0.87742 0.79539 0.79946 1.90909 1.16549 1.62113 1.69050 1.44530 1.11780 1.45808 1.26625 0.73713 0.90967 0.90156 0.90856 0.88087 0.88747 0.88745 0.86176 0.90319 0.84097 0.84833 0.84984 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.84 37.16 0.33 -1.57 16 2 C 0.13 1.91 2.90 -27.89 -0.08 1.82 16 3 H 0.11 1.56 7.16 -51.93 -0.37 1.19 16 4 O -0.36 -6.49 9.13 -40.78 -0.37 -6.86 16 5 C 0.51 10.99 7.82 34.41 0.27 11.26 16 6 O -0.51 -11.79 12.86 -19.29 -0.25 -12.04 16 7 C -0.25 -5.92 5.92 -104.39 -0.62 -6.54 16 8 C -0.04 -0.79 9.60 -39.20 -0.38 -1.16 16 9 C -0.25 -5.12 10.03 -39.37 -0.39 -5.51 16 10 C -0.09 -1.92 10.01 -39.59 -0.40 -2.32 16 11 C -0.15 -3.54 8.62 -38.88 -0.34 -3.87 16 12 C 0.15 3.75 5.51 -106.54 -0.59 3.17 16 13 C -0.41 -10.58 7.68 -37.82 -0.29 -10.87 16 14 H 0.11 2.75 5.92 -52.49 -0.31 2.44 16 15 C 0.07 1.67 5.25 -17.30 -0.09 1.58 16 16 N -0.78 -19.08 11.14 55.57 0.62 -18.46 16 17 Si 0.92 18.31 29.57 -169.99 -5.03 13.28 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 C 0.41 5.71 7.21 -155.22 -1.12 4.59 16 22 N -0.50 -6.77 8.88 -8.20 -0.07 -6.84 16 23 C 0.16 2.00 6.63 -84.51 -0.56 1.44 16 24 C -0.11 -1.06 10.03 -39.27 -0.39 -1.46 16 25 C -0.07 -0.57 10.00 -39.55 -0.40 -0.97 16 26 C -0.14 -1.15 10.02 -39.52 -0.40 -1.55 16 27 C -0.04 -0.43 9.68 -39.35 -0.38 -0.81 16 28 C -0.20 -2.62 5.89 -104.78 -0.62 -3.23 16 29 C 0.55 8.16 7.99 -12.43 -0.10 8.06 16 30 O -0.51 -8.69 17.48 5.16 0.09 -8.60 16 31 N -0.64 -8.82 5.27 -10.46 -0.06 -8.88 16 32 H 0.42 5.38 8.75 -40.82 -0.36 5.02 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.04 7.81 -51.93 -0.41 0.64 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.97 7.62 -52.49 -0.40 1.57 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 39 H 0.12 2.93 6.60 -52.48 -0.35 2.58 16 40 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 41 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 43 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.14 1.38 7.83 -52.49 -0.41 0.97 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -29.33 381.83 -10.54 -39.87 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -4.70 Total: 10.70 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -6.53 Total: -7.93 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.49 Total: -34.18 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.53 Total: -27.49 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.33 -10.54 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023969923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.537 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds