Wall clock time and date at job start Tue Mar 31 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47105 * 2 1 4 4 O 1.45204 * 109.46671 * 240.00256 * 2 1 3 5 5 C 1.34807 * 116.99784 * 90.00219 * 4 2 1 6 6 O 1.21531 * 120.00317 * 359.97438 * 5 4 2 7 7 C 1.47288 * 119.99999 * 179.97438 * 5 4 2 8 8 C 1.39294 * 120.28397 * 354.20539 * 7 5 4 9 9 C 1.38202 * 120.08057 * 179.72510 * 8 7 5 10 10 C 1.38835 * 120.68703 * 0.02562 * 9 8 7 11 11 C 1.37602 * 120.58182 * 359.97438 * 10 9 8 12 12 C 1.40706 * 119.88571 * 359.97438 * 11 10 9 13 13 C 1.40859 * 120.32955 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99876 * 145.81154 * 13 12 11 15 15 C 1.40299 * 120.00056 * 325.81518 * 13 12 11 16 16 N 1.30611 * 119.99649 * 350.76181 * 15 13 12 17 17 Si 1.86794 * 120.00010 * 170.76547 * 15 13 12 18 18 H 1.48497 * 109.47623 * 89.99514 * 17 15 13 19 19 H 1.48499 * 109.47108 * 210.00095 * 17 15 13 20 20 H 1.48509 * 109.47094 * 329.99634 * 17 15 13 21 21 C 1.50693 * 109.47293 * 120.00656 * 2 1 3 22 22 N 1.29836 * 118.31706 * 14.99498 * 21 2 1 23 23 C 1.35665 * 121.61686 * 180.02562 * 22 21 2 24 24 C 1.39642 * 121.64364 * 179.97438 * 23 22 21 25 25 C 1.37659 * 119.68305 * 179.97438 * 24 23 22 26 26 C 1.38881 * 120.82173 * 0.04862 * 25 24 23 27 27 C 1.37763 * 120.57039 * 359.95008 * 26 25 24 28 28 C 1.39335 * 119.51435 * 0.02562 * 27 26 25 29 29 C 1.47052 * 121.94065 * 179.97438 * 28 27 26 30 30 O 1.21733 * 121.29602 * 0.04233 * 29 28 27 31 31 N 1.35343 * 117.40791 * 179.76265 * 29 28 27 32 32 H 0.96998 * 119.69595 * 180.24365 * 31 29 28 33 33 H 1.09000 * 109.47402 * 59.99241 * 1 2 3 34 34 H 1.08994 * 109.47415 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47050 * 299.99768 * 1 2 3 36 36 H 1.07994 * 119.96105 * 359.73844 * 8 7 5 37 37 H 1.08000 * 119.65455 * 180.02562 * 9 8 7 38 38 H 1.08004 * 119.70721 * 179.97438 * 10 9 8 39 39 H 1.08007 * 120.05305 * 180.02562 * 11 10 9 40 40 H 0.97005 * 119.99757 * 179.97438 * 16 15 13 41 41 H 1.08000 * 120.15394 * 359.97438 * 24 23 22 42 42 H 1.08004 * 119.58788 * 179.97438 * 25 24 23 43 43 H 1.08007 * 119.71595 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.24276 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2179 0.0673 -2.2859 6 8 1.9969 1.2620 -2.2551 7 6 2.7086 -0.5591 -3.5253 8 6 3.0782 -1.9021 -3.5349 9 6 3.5328 -2.4871 -4.7016 10 6 3.6276 -1.7493 -5.8739 11 6 3.2699 -0.4208 -5.8959 12 6 2.8030 0.1991 -4.7222 13 6 2.4338 1.5584 -4.7342 14 1 1.6209 1.9027 -4.1119 15 6 3.1219 2.4650 -5.5545 16 7 4.2134 2.0924 -6.1675 17 14 2.4771 4.2048 -5.7700 18 1 3.0660 5.0836 -4.7279 19 1 2.8545 4.7096 -7.1145 20 1 0.9978 4.2043 -5.6388 21 6 2.0324 -0.7105 1.2303 22 7 1.1968 -1.4410 1.9040 23 6 1.5770 -2.1093 3.0217 24 6 0.6786 -2.8947 3.7470 25 6 1.1081 -3.5560 4.8753 26 6 2.4252 -3.4515 5.3034 27 6 3.3301 -2.6827 4.6048 28 6 2.9158 -2.0056 3.4597 29 6 3.8363 -1.1703 2.6740 30 8 5.0027 -1.0389 2.9967 31 7 3.3376 -0.5578 1.5749 32 1 3.9165 -0.0017 1.0304 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 -0.3633 0.5138 0.8900 36 1 3.0093 -2.4869 -2.6297 37 1 3.8171 -3.5290 -4.7014 38 1 3.9853 -2.2224 -6.7766 39 1 3.3467 0.1450 -6.8127 40 1 4.6889 2.7191 -6.7350 41 1 -0.3482 -2.9829 3.4241 42 1 0.4119 -4.1628 5.4353 43 1 2.7428 -3.9777 6.1915 44 1 4.3531 -2.6055 4.9422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023969923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:33 Heat of formation + Delta-G solvation = -65.801810 kcal Electronic energy + Delta-G solvation = -31446.462188 eV Core-core repulsion = 27099.836999 eV Total energy + Delta-G solvation = -4346.625190 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.80478 -41.34046 -39.52917 -39.40897 -38.71234 -37.15221 -35.63703 -34.84743 -33.53112 -32.28294 -31.92234 -31.43580 -30.24440 -27.54359 -26.68726 -25.65967 -24.84700 -23.26755 -22.98058 -22.52577 -21.42784 -20.38113 -20.00863 -19.43537 -18.88201 -18.61155 -17.51065 -17.14804 -16.96016 -16.86997 -16.71991 -16.13797 -16.09218 -15.83739 -15.40874 -15.22540 -14.95605 -14.66418 -14.55388 -14.40029 -14.25520 -14.03775 -13.50676 -13.45473 -13.12635 -12.99875 -12.88723 -12.87150 -12.78262 -12.60411 -12.39550 -12.32675 -12.00892 -11.87204 -11.56990 -11.51505 -11.49695 -11.19466 -11.17927 -10.74674 -10.22459 -9.53720 -9.34393 -9.22720 -8.75359 -6.46642 -0.72176 -0.32301 0.30011 0.90643 0.98010 1.32340 1.36266 1.48164 1.50933 1.52800 1.95597 1.97583 2.18326 2.62903 2.71814 2.88411 3.04791 3.32654 3.61562 3.69606 3.85552 3.92981 3.98964 4.22554 4.24096 4.29661 4.38439 4.53412 4.55495 4.70381 4.78051 4.86392 4.91705 4.99710 5.05150 5.08731 5.14122 5.17148 5.25526 5.29080 5.36131 5.39083 5.42905 5.57525 5.77061 5.77598 5.98339 6.05097 6.25710 6.42118 6.59959 6.60877 6.76319 6.85277 7.16010 8.21512 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.002441 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.461658 B =11465.893676 C =12002.338560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.129 3.871 3 H 0.108 0.892 4 O -0.355 6.355 5 C 0.512 3.488 6 O -0.529 6.529 7 C -0.272 4.272 8 C -0.040 4.040 9 C -0.240 4.240 10 C -0.083 4.083 11 C -0.173 4.173 12 C 0.121 3.879 13 C -0.449 4.449 14 H 0.091 0.909 15 C 0.034 3.966 16 N -0.812 5.812 17 Si 0.981 3.019 18 H -0.269 1.269 19 H -0.259 1.259 20 H -0.259 1.259 21 C 0.398 3.602 22 N -0.492 5.492 23 C 0.126 3.874 24 C -0.108 4.108 25 C -0.060 4.060 26 C -0.122 4.122 27 C -0.058 4.058 28 C -0.217 4.217 29 C 0.544 3.456 30 O -0.547 6.547 31 N -0.642 5.642 32 H 0.423 0.577 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.293 0.707 41 H 0.158 0.842 42 H 0.177 0.823 43 H 0.169 0.831 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 -8.579 17.460 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.072 3.928 3 H 0.125 0.875 4 O -0.272 6.272 5 C 0.363 3.637 6 O -0.421 6.421 7 C -0.275 4.275 8 C -0.058 4.058 9 C -0.259 4.259 10 C -0.102 4.102 11 C -0.192 4.192 12 C 0.118 3.882 13 C -0.477 4.477 14 H 0.108 0.892 15 C -0.183 4.183 16 N -0.437 5.437 17 Si 0.802 3.198 18 H -0.194 1.194 19 H -0.183 1.183 20 H -0.182 1.182 21 C 0.129 3.871 22 N -0.214 5.214 23 C 0.017 3.983 24 C -0.127 4.127 25 C -0.079 4.079 26 C -0.140 4.140 27 C -0.077 4.077 28 C -0.223 4.223 29 C 0.338 3.662 30 O -0.425 6.425 31 N -0.285 5.285 32 H 0.262 0.738 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.176 0.824 42 H 0.194 0.806 43 H 0.187 0.813 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.078 -8.383 17.573 20.716 hybrid contribution 1.406 1.490 -0.504 2.110 sum -5.672 -6.892 17.069 19.262 Atomic orbital electron populations 1.21903 0.89584 1.04655 1.03410 1.21504 0.97827 0.95372 0.78086 0.87471 1.86709 1.78632 1.42084 1.19812 1.21279 0.74546 0.84842 0.83035 1.90729 1.50876 1.16672 1.83824 1.19021 1.21308 0.96719 0.90466 1.21093 0.94041 0.92683 0.97967 1.20804 1.11542 1.00344 0.93183 1.21237 0.96914 0.93852 0.98187 1.21309 1.05881 0.94319 0.97670 1.17799 0.87413 0.93243 0.89756 1.20226 1.14812 0.93016 1.19602 0.89154 1.26859 0.93814 1.05434 0.92168 1.69721 1.13030 1.38972 1.21974 0.85207 0.79893 0.76031 0.78678 1.19371 1.18263 1.18247 1.22297 0.79823 0.91191 0.93808 1.68459 1.32739 1.11099 1.09138 1.19182 0.91417 0.95977 0.91674 1.21227 1.00126 0.96206 0.95094 1.21816 0.96369 0.95639 0.94066 1.21666 0.93040 0.98346 1.00950 1.21225 1.01164 0.93647 0.91684 1.20681 0.94442 1.05738 1.01402 1.18814 0.87722 0.79585 0.80095 1.90871 1.17894 1.63667 1.70047 1.44477 1.11839 1.45697 1.26521 0.73755 0.92225 0.89928 0.88564 0.86084 0.85249 0.85729 0.87415 0.89571 0.82404 0.80563 0.81342 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.84 71.98 0.64 -2.92 16 2 C 0.13 3.85 2.90 29.85 0.09 3.94 16 3 H 0.11 3.22 7.16 -2.39 -0.02 3.21 16 4 O -0.35 -13.12 9.13 -57.19 -0.52 -13.65 16 5 C 0.51 23.00 7.82 70.20 0.55 23.55 16 6 O -0.53 -25.68 12.86 19.73 0.25 -25.43 16 7 C -0.27 -13.15 5.92 -19.71 -0.12 -13.27 16 8 C -0.04 -1.68 9.60 22.52 0.22 -1.46 16 9 C -0.24 -9.55 10.03 22.40 0.22 -9.33 16 10 C -0.08 -3.52 10.01 22.26 0.22 -3.30 16 11 C -0.17 -8.52 8.62 22.72 0.20 -8.32 16 12 C 0.12 6.39 5.51 -21.10 -0.12 6.28 16 13 C -0.45 -24.06 7.68 23.41 0.18 -23.88 16 14 H 0.09 4.98 5.92 -2.91 -0.02 4.96 16 15 C 0.03 1.69 5.25 85.38 0.45 2.14 16 16 N -0.81 -40.91 11.14 21.88 0.24 -40.66 16 17 Si 0.98 38.61 29.57 68.60 2.03 40.64 16 18 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 19 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 21 C 0.40 11.11 7.21 138.06 0.99 12.11 16 22 N -0.49 -12.91 8.88 -179.84 -1.60 -14.50 16 23 C 0.13 3.03 6.63 39.63 0.26 3.29 16 24 C -0.11 -1.75 10.03 22.47 0.23 -1.52 16 25 C -0.06 -0.63 10.00 22.29 0.22 -0.41 16 26 C -0.12 -1.48 10.02 22.31 0.22 -1.25 16 27 C -0.06 -1.15 9.68 22.42 0.22 -0.93 16 28 C -0.22 -5.61 5.89 -19.96 -0.12 -5.73 16 29 C 0.54 16.63 7.99 86.47 0.69 17.32 16 30 O -0.55 -19.42 17.48 -4.45 -0.08 -19.50 16 31 N -0.64 -18.32 5.27 -304.90 -1.61 -19.93 16 32 H 0.42 11.53 8.75 -92.71 -0.81 10.72 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 2.08 7.81 -2.39 -0.02 2.06 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.12 4.56 7.62 -2.91 -0.02 4.54 16 37 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.11 5.48 6.60 -2.91 -0.02 5.46 16 40 H 0.29 13.29 8.29 -92.70 -0.77 12.52 16 41 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 42 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 43 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 44 H 0.14 2.66 7.83 -2.91 -0.02 2.63 16 Total: -1.00 -67.21 381.83 4.24 -62.97 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.27 Total: 33.73 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 5.25 Total: -3.68 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -2.96 Total: -75.09 kcal Atomic # 8 Polarization: -58.23 SS G_CDS: -0.35 Total: -58.57 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -67.21 4.24 -62.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023969923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.827 kcal (2) G-P(sol) polarization free energy of solvation -67.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds