Wall clock time and date at job start Tue Mar 31 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86799 * 120.00084 * 2 1 4 4 H 1.48493 * 109.47072 * 269.99780 * 3 2 1 5 5 H 1.48494 * 109.47057 * 29.99874 * 3 2 1 6 6 H 1.48497 * 109.47091 * 149.99863 * 3 2 1 7 7 C 1.38632 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00266 * 359.97438 * 7 2 1 9 9 O 1.34814 * 119.99963 * 180.02562 * 7 2 1 10 10 C 1.35787 * 116.99804 * 174.96240 * 9 7 2 11 11 C 1.38912 * 119.99549 * 5.34520 * 10 9 7 12 12 C 1.38002 * 119.99800 * 180.02562 * 11 10 9 13 13 C 1.38929 * 119.99734 * 359.97202 * 12 11 10 14 14 N 1.39939 * 120.00125 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99708 * 35.14009 * 14 13 12 16 16 O 1.21604 * 120.00065 * 355.49280 * 15 14 13 17 17 C 1.47501 * 119.99570 * 175.49260 * 15 14 13 18 18 C 1.36606 * 125.76620 * 179.97438 * 17 15 14 19 19 N 1.34826 * 106.83481 * 179.97438 * 18 17 15 20 20 C 1.46501 * 126.59682 * 180.26376 * 19 18 17 21 21 C 1.50697 * 109.47200 * 124.71310 * 20 19 18 22 22 C 1.38234 * 119.99794 * 269.72532 * 21 20 19 23 23 C 1.38237 * 120.00150 * 179.76575 * 22 21 20 24 24 C 1.38239 * 119.99435 * 0.51286 * 23 22 21 25 25 C 1.38238 * 120.00180 * 359.73812 * 24 23 22 26 26 C 1.38231 * 120.00209 * 89.99953 * 21 20 19 27 27 N 1.40208 * 106.81079 * 0.02562 * 19 18 17 28 28 N 1.28760 * 108.36921 * 359.97438 * 27 19 18 29 29 C 1.38939 * 119.99668 * 0.28269 * 13 12 11 30 30 C 1.37992 * 119.99217 * 359.46292 * 29 13 12 31 31 H 0.96993 * 119.99358 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99914 * 0.02562 * 11 10 9 33 33 H 1.07997 * 120.00003 * 179.97438 * 12 11 10 34 34 H 0.96999 * 119.99651 * 215.13580 * 14 13 12 35 35 H 1.07997 * 126.58664 * 359.97438 * 18 17 15 36 36 H 1.09003 * 109.46786 * 244.71533 * 20 19 18 37 37 H 1.08998 * 109.47061 * 4.71036 * 20 19 18 38 38 H 1.08001 * 120.00177 * 0.02562 * 22 21 20 39 39 H 1.07998 * 120.00099 * 180.23005 * 23 22 21 40 40 H 1.08006 * 119.99659 * 179.72686 * 24 23 22 41 41 H 1.07999 * 119.99724 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.99798 * 0.02562 * 26 21 20 43 43 H 1.08006 * 120.00054 * 179.70028 * 29 13 12 44 44 H 1.08005 * 119.99497 * 180.25557 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0463 -1.4000 5 1 1.4473 2.6526 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 1.4690 -2.1360 -0.0005 9 8 3.3571 -1.2006 0.0000 10 6 3.9735 -2.4059 0.1057 11 6 3.2214 -3.5738 0.0950 12 6 3.8478 -4.7987 0.2029 13 6 5.2304 -4.8638 0.3216 14 7 5.8657 -6.1059 0.4305 15 6 5.3808 -7.1716 -0.2371 16 8 4.3458 -7.0744 -0.8681 17 6 6.1056 -8.4558 -0.2024 18 6 5.7229 -9.6059 -0.8323 19 7 6.6557 -10.5365 -0.5468 20 6 6.6723 -11.9269 -1.0082 21 6 7.9771 -12.2085 -1.7076 22 6 8.0892 -12.0035 -3.0701 23 6 9.2875 -12.2572 -3.7110 24 6 10.3705 -12.7261 -2.9911 25 6 10.2568 -12.9360 -1.6295 26 6 9.0601 -12.6773 -0.9878 27 7 7.6099 -9.9162 0.2721 28 7 7.2543 -8.6921 0.4540 29 6 5.9820 -3.6954 0.3376 30 6 5.3559 -2.4709 0.2244 31 1 -0.4849 0.8400 0.0004 32 1 2.1466 -3.5231 0.0023 33 1 3.2631 -5.7067 0.1951 34 1 6.6550 -6.1999 0.9865 35 1 4.8421 -9.7435 -1.4420 36 1 6.5668 -12.5947 -0.1532 37 1 5.8463 -12.0898 -1.7005 38 1 7.2419 -11.6411 -3.6332 39 1 9.3761 -12.0935 -4.7748 40 1 11.3054 -12.9285 -3.4925 41 1 11.1028 -13.3027 -1.0672 42 1 8.9710 -12.8420 0.0759 43 1 7.0565 -3.7457 0.4347 44 1 5.9405 -1.5627 0.2326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024500453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:22 Heat of formation + Delta-G solvation = 100.470986 kcal Electronic energy + Delta-G solvation = -29579.540898 eV Core-core repulsion = 25272.418589 eV Total energy + Delta-G solvation = -4307.122309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.132 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.48521 -40.03406 -39.74168 -38.69366 -36.59713 -35.48720 -33.97885 -32.30204 -32.08807 -31.48342 -31.06723 -30.24244 -28.30199 -27.32353 -25.24588 -23.89193 -23.14802 -23.08827 -22.35831 -21.78969 -21.19446 -20.09191 -18.60503 -17.81821 -17.48841 -17.29200 -16.66542 -16.48777 -16.36414 -15.72850 -15.55848 -15.03047 -14.83647 -14.63361 -14.23677 -13.99491 -13.93230 -13.83147 -13.74899 -13.64611 -13.35573 -13.15547 -12.73648 -12.40714 -12.38083 -12.24353 -11.91405 -11.73955 -11.66312 -11.60924 -11.48137 -10.93281 -10.71706 -10.70150 -10.25956 -9.92392 -9.67141 -9.56498 -9.47707 -9.43221 -9.22501 -8.73613 -8.25009 -7.03000 -6.38077 -4.03671 0.53133 0.84693 0.88557 1.47823 1.81196 2.12622 2.22949 3.17911 3.23723 3.24846 3.27995 3.34011 3.43006 3.74916 3.97401 4.01664 4.26723 4.39346 4.40993 4.48812 4.55723 4.56112 4.63315 4.73093 4.88580 4.90658 4.95759 5.09541 5.14183 5.34490 5.45639 5.51341 5.61807 5.69736 5.86511 5.91347 5.96202 5.99202 6.12350 6.12963 6.27603 6.39354 6.62890 6.80134 6.93944 7.11461 7.33063 7.52656 7.63616 7.78317 7.83284 8.05840 8.29842 8.97038 9.59125 10.69510 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.026365 B = 0.001491 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.765019 B =18774.327424 C =18964.451687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.388 4.388 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.152 3.848 11 C -0.207 4.207 12 C -0.066 4.066 13 C 0.043 3.957 14 N -0.644 5.644 15 C 0.597 3.403 16 O -0.524 6.524 17 C -0.096 4.096 18 C 0.094 3.906 19 N -0.359 5.359 20 C 0.165 3.835 21 C -0.120 4.120 22 C -0.097 4.097 23 C -0.123 4.123 24 C -0.105 4.105 25 C -0.122 4.122 26 C -0.082 4.082 27 N -0.057 5.057 28 N -0.207 5.207 29 C -0.092 4.092 30 C -0.177 4.177 31 H 0.279 0.721 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.410 0.590 35 H 0.206 0.794 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.118 0.882 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.297 -29.163 -3.742 34.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.125 0.875 9 O -0.122 6.122 10 C 0.100 3.900 11 C -0.227 4.227 12 C -0.085 4.085 13 C -0.049 4.049 14 N -0.288 5.288 15 C 0.382 3.618 16 O -0.399 6.399 17 C -0.235 4.235 18 C -0.063 4.063 19 N -0.144 5.144 20 C 0.045 3.955 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.141 4.141 24 C -0.123 4.123 25 C -0.140 4.140 26 C -0.101 4.101 27 N -0.038 5.038 28 N -0.081 5.081 29 C -0.113 4.113 30 C -0.197 4.197 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.246 0.754 35 H 0.223 0.777 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.136 0.864 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.726 -28.967 -3.451 34.665 hybrid contribution -0.332 0.535 -0.419 0.756 sum 18.394 -28.433 -3.870 34.084 Atomic orbital electron populations 1.69660 1.05552 1.28433 1.48086 1.24468 0.95031 0.98806 0.95735 0.86173 0.80322 0.81439 0.78924 1.19923 1.20866 1.18325 1.20786 0.76913 0.96682 1.51973 0.87546 1.83567 1.22606 1.25656 1.80328 1.19160 0.91696 0.85568 0.93592 1.21221 1.01297 0.91255 1.08912 1.20915 0.92344 0.97902 0.97386 1.17307 0.91751 0.83342 1.12518 1.42952 1.31309 1.07519 1.47000 1.16767 0.84085 0.81726 0.79243 1.90829 1.22642 1.83334 1.43100 1.21452 0.97582 0.96805 1.07676 1.23408 0.95689 0.88075 0.99110 1.50573 1.17537 1.11121 1.35160 1.20886 0.97339 0.77097 1.00211 1.19658 0.95139 1.03199 0.94110 1.21095 0.98281 0.98429 0.93727 1.21179 0.93009 0.99627 1.00315 1.21304 0.98758 0.97833 0.94455 1.21203 0.97705 1.00334 0.94807 1.21085 0.92315 0.96789 0.99873 1.81982 1.10815 1.00401 1.10583 1.74642 1.09867 1.08179 1.15382 1.20379 0.98324 0.90689 1.01865 1.19981 0.91924 0.97292 1.10465 0.91091 0.84528 0.85352 0.75388 0.77749 0.87395 0.86691 0.85800 0.85623 0.85734 0.85567 0.85498 0.86386 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.59 13.96 55.48 0.77 -24.81 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 21.80 28.62 -169.99 -4.86 16.93 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.39 -11.03 9.94 30.88 0.31 -10.73 16 8 H 0.11 3.10 5.43 -52.48 -0.28 2.82 16 9 O -0.22 -5.75 8.58 -0.02 0.00 -5.75 16 10 C 0.15 3.56 6.65 -39.08 -0.26 3.30 16 11 C -0.21 -4.66 9.16 -39.42 -0.36 -5.02 16 12 C -0.07 -1.32 8.69 -39.41 -0.34 -1.66 16 13 C 0.04 0.77 6.30 -83.64 -0.53 0.24 16 14 N -0.64 -9.62 5.33 -10.77 -0.06 -9.67 16 15 C 0.60 9.02 7.66 -12.48 -0.10 8.92 16 16 O -0.52 -9.31 14.30 5.27 0.08 -9.23 16 17 C -0.10 -1.19 6.99 -83.56 -0.58 -1.77 16 18 C 0.09 0.85 11.27 -16.83 -0.19 0.66 16 19 N -0.36 -2.93 3.68 -62.24 -0.23 -3.16 16 20 C 0.16 0.72 6.67 -5.19 -0.03 0.68 16 21 C -0.12 -0.70 5.33 -104.63 -0.56 -1.25 16 22 C -0.10 -0.56 9.70 -39.58 -0.38 -0.95 16 23 C -0.12 -0.71 10.05 -39.58 -0.40 -1.10 16 24 C -0.11 -0.58 10.05 -39.58 -0.40 -0.98 16 25 C -0.12 -0.69 10.05 -39.58 -0.40 -1.09 16 26 C -0.08 -0.49 9.70 -39.59 -0.38 -0.87 16 27 N -0.06 -0.65 13.63 60.35 0.82 0.17 16 28 N -0.21 -2.62 12.04 32.84 0.40 -2.22 16 29 C -0.09 -1.59 9.96 -39.41 -0.39 -1.98 16 30 C -0.18 -3.49 9.98 -39.42 -0.39 -3.89 16 31 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.14 3.22 5.63 -52.49 -0.30 2.92 16 33 H 0.13 2.54 6.22 -52.49 -0.33 2.21 16 34 H 0.41 5.15 8.51 -40.82 -0.35 4.80 16 35 H 0.21 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.11 0.30 8.09 -51.93 -0.42 -0.12 16 37 H 0.11 0.17 8.02 -51.93 -0.42 -0.24 16 38 H 0.12 0.54 8.06 -52.49 -0.42 0.11 16 39 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 40 H 0.12 0.46 8.06 -52.48 -0.42 0.03 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 43 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 44 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -34.60 389.79 -7.31 -41.90 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.61 Total: 5.78 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -5.49 Total: -15.81 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 1.71 Total: -39.70 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.08 Total: -14.98 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.86 Total: 16.93 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.60 -7.31 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024500453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.373 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds