Wall clock time and date at job start Tue Mar 31 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00352 * 2 1 4 4 C 1.50704 * 109.47056 * 270.00510 * 3 2 1 5 5 H 1.07998 * 120.00154 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99692 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99695 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00292 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46965 * 90.00315 * 8 6 4 10 10 H 1.48501 * 109.47201 * 210.00367 * 8 6 4 11 11 H 1.48496 * 109.47104 * 330.00541 * 8 6 4 12 12 C 1.34776 * 119.99801 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99940 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99978 * 359.97438 * 12 2 1 15 15 N 1.46906 * 109.47109 * 180.02562 * 14 12 2 16 16 C 1.46959 * 110.99831 * 293.79913 * 15 14 12 17 17 C 1.53048 * 109.36410 * 176.81063 * 16 15 14 18 18 N 1.46959 * 109.36409 * 58.40073 * 17 16 15 19 19 C 1.39705 * 111.00065 * 176.81320 * 18 17 16 20 20 C 1.39316 * 120.48996 * 303.52187 * 19 18 17 21 21 C 1.38494 * 118.35575 * 179.71889 * 20 19 18 22 22 C 1.38278 * 119.24297 * 0.57351 * 21 20 19 23 23 N 1.48006 * 119.53878 * 179.70441 * 22 21 20 24 24 O 1.21793 * 120.00307 * 179.97438 * 23 22 21 25 25 O 1.21803 * 119.99393 * 359.97438 * 23 22 21 26 26 N 1.31856 * 120.92731 * 359.69012 * 22 21 20 27 27 C 1.31823 * 121.79824 * 0.02562 * 26 22 21 28 28 C 1.46959 * 110.88119 * 300.67921 * 18 17 16 29 29 C 1.46955 * 110.99744 * 169.99905 * 15 14 12 30 30 H 1.08999 * 109.46908 * 270.00137 * 1 2 3 31 31 H 1.09000 * 109.47065 * 29.99587 * 1 2 3 32 32 H 1.09002 * 109.47641 * 149.99946 * 1 2 3 33 33 H 1.09002 * 109.47248 * 30.00186 * 3 2 1 34 34 H 1.09000 * 109.47481 * 150.00438 * 3 2 1 35 35 H 0.97000 * 120.00234 * 179.97438 * 7 6 4 36 36 H 1.08992 * 109.46894 * 60.00096 * 14 12 2 37 37 H 1.09004 * 109.47113 * 300.00247 * 14 12 2 38 38 H 1.08995 * 109.48972 * 296.77903 * 16 15 14 39 39 H 1.08998 * 109.48999 * 56.84502 * 16 15 14 40 40 H 1.08999 * 109.48951 * 298.43451 * 17 16 15 41 41 H 1.09000 * 109.50530 * 178.37669 * 17 16 15 42 42 H 1.08003 * 120.81946 * 359.97438 * 20 19 18 43 43 H 1.07998 * 120.38185 * 180.26456 * 21 20 19 44 44 H 1.07998 * 119.66576 * 180.02562 * 27 26 22 45 45 H 1.08995 * 109.48972 * 299.35239 * 28 18 17 46 46 H 1.08993 * 109.50763 * 179.29948 * 28 18 17 47 47 H 1.08994 * 109.48867 * 303.15267 * 29 15 14 48 48 H 1.09001 * 109.49150 * 63.20104 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.3465 3.2568 -2.9127 8 14 3.7340 3.9286 -0.2529 9 1 5.1072 3.5066 0.1235 10 1 3.7500 5.3553 -0.6647 11 1 2.8277 3.7594 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3852 -2.4723 -0.0005 15 7 2.3398 -3.5889 -0.0005 16 6 3.1029 -3.6295 -1.2559 17 6 4.1383 -4.7542 -1.1842 18 7 3.4536 -6.0325 -0.9460 19 6 4.3614 -7.0944 -0.9459 20 6 5.1849 -7.3204 -2.0467 21 6 6.0728 -8.3821 -1.9970 22 6 6.1044 -9.1841 -0.8710 23 7 7.0461 -10.3245 -0.8136 24 8 7.0814 -11.0360 0.1743 25 8 7.7857 -10.5513 -1.7544 26 7 5.3077 -8.9469 0.1525 27 6 4.4521 -7.9440 0.1490 28 6 2.6906 -5.9920 0.3094 29 6 1.6550 -4.8672 0.2377 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6085 2.0283 0.5139 34 1 3.1500 1.1383 0.5138 35 1 3.8233 4.0827 -3.0900 36 1 0.7583 -2.5298 -0.8902 37 1 0.7589 -2.5302 0.8897 38 1 2.4238 -3.8129 -2.0884 39 1 3.6108 -2.6765 -1.4036 40 1 4.8339 -4.5567 -0.3686 41 1 4.6862 -4.8050 -2.1252 42 1 5.1351 -6.6808 -2.9156 43 1 6.7294 -8.5845 -2.8302 44 1 3.8159 -7.7812 1.0063 45 1 3.3697 -5.8086 1.1419 46 1 2.1827 -6.9449 0.4575 47 1 1.1075 -4.8165 1.1788 48 1 0.9591 -5.0645 -0.5777 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026488663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:44 Heat of formation + Delta-G solvation = 47.807043 kcal Electronic energy + Delta-G solvation = -32169.033905 eV Core-core repulsion = 27650.037658 eV Total energy + Delta-G solvation = -4518.996247 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 363.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.52756 -41.43899 -39.84092 -38.75506 -36.82282 -36.14344 -34.94478 -33.39533 -32.66473 -31.83392 -31.40395 -29.59210 -28.27265 -26.69414 -25.97879 -25.50337 -24.62869 -23.28999 -22.74997 -22.08035 -20.45213 -19.93378 -19.00042 -18.66426 -18.01944 -17.88010 -17.20178 -17.05519 -16.55242 -16.08948 -15.81998 -15.61069 -15.48623 -14.93104 -14.79647 -14.73652 -14.55239 -14.13816 -13.95517 -13.93669 -13.49271 -12.93561 -12.81057 -12.51388 -12.31870 -12.10550 -12.06524 -11.87187 -11.73818 -11.63638 -11.62455 -11.42126 -11.37538 -11.33873 -11.17415 -10.93655 -10.63461 -10.60205 -10.37785 -10.22585 -9.64457 -9.18389 -8.87354 -8.67780 -8.46108 -7.81602 -6.17835 -4.17179 -0.62672 0.29548 0.85610 0.88083 2.66805 2.95728 3.19351 3.22022 3.27261 3.29843 3.33931 3.53261 3.79335 3.92180 3.96330 4.04615 4.24293 4.31478 4.54411 4.64336 4.74529 4.77245 4.84342 4.94629 4.98362 5.03803 5.12043 5.17319 5.20120 5.24118 5.29421 5.35413 5.40637 5.49288 5.65916 5.73035 5.86320 6.00080 6.03730 6.11273 6.22394 6.53924 6.67629 6.70543 6.80410 6.87527 7.21802 7.45213 7.51408 8.12270 8.36894 8.81905 8.87398 9.42348 10.95326 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.001811 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.253283 B =15458.746004 C =16420.620974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.598 5.598 3 C 0.216 3.784 4 C -0.530 4.530 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.525 6.525 14 C 0.040 3.960 15 N -0.523 5.523 16 C 0.049 3.951 17 C 0.062 3.938 18 N -0.480 5.480 19 C 0.124 3.876 20 C -0.101 4.101 21 C -0.064 4.064 22 C 0.127 3.873 23 N 0.034 4.966 24 O -0.128 6.128 25 O -0.163 6.163 26 N -0.404 5.404 27 C 0.069 3.931 28 C 0.044 3.956 29 C 0.056 3.944 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.037 0.963 35 H 0.265 0.735 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.164 0.836 43 H 0.167 0.833 44 H 0.183 0.817 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 -20.751 4.536 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.331 5.331 3 C 0.096 3.904 4 C -0.568 4.568 5 H 0.091 0.909 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.293 3.707 13 O -0.402 6.402 14 C -0.091 4.091 15 N -0.248 5.248 16 C -0.079 4.079 17 C -0.062 4.062 18 N -0.193 5.193 19 C 0.020 3.980 20 C -0.130 4.130 21 C -0.087 4.087 22 C -0.090 4.090 23 N 0.555 4.445 24 O -0.351 6.351 25 O -0.373 6.373 26 N -0.116 5.116 27 C -0.097 4.097 28 C -0.082 4.082 29 C -0.073 4.073 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.060 0.940 39 H 0.135 0.865 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.182 0.818 43 H 0.184 0.816 44 H 0.200 0.800 45 H 0.087 0.913 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.443 -20.477 5.049 21.553 hybrid contribution 0.156 0.844 -0.253 0.895 sum -4.287 -19.633 4.795 20.660 Atomic orbital electron populations 1.21676 0.80980 1.02993 1.00520 1.47847 1.06258 1.07105 1.71915 1.19664 0.92473 0.79909 0.98362 1.21294 1.37141 1.07228 0.91181 0.90880 1.24865 0.95211 0.97358 0.95599 1.69889 1.41337 1.23589 1.18664 0.86841 0.80130 0.79794 0.82860 1.19889 1.21041 1.19080 1.20116 0.88208 0.84673 0.77665 1.90634 1.13654 1.86762 1.49110 1.22012 0.94124 0.90298 1.02704 1.61810 1.25492 1.01778 1.35704 1.22434 0.95792 1.00040 0.89608 1.22490 0.96221 0.84659 1.02862 1.59124 1.22173 1.03528 1.34487 1.20434 0.89633 0.94319 0.93597 1.21366 0.94937 0.97842 0.98817 1.21647 0.97683 0.92040 0.97298 1.21347 0.98582 0.93845 0.95233 1.43336 0.99971 1.00920 1.00237 1.94575 1.73205 1.44743 1.22590 1.94552 1.37322 1.75978 1.29404 1.66297 1.02124 1.17220 1.25984 1.23039 0.97344 0.91441 0.97847 1.22550 0.96597 0.99980 0.89092 1.22190 0.94863 0.88142 1.02074 0.93528 0.90446 0.92348 0.95234 0.94495 0.92499 0.91953 0.88219 0.93986 0.86490 0.91476 0.89000 0.81837 0.81571 0.80033 0.91350 0.88871 0.89183 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.24 59.85 0.61 1.72 16 2 N -0.60 -11.18 2.86 -182.96 -0.52 -11.70 16 3 C 0.22 4.99 4.23 -5.19 -0.02 4.97 16 4 C -0.53 -14.48 9.94 -34.44 -0.34 -14.83 16 5 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 6 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 7 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 8 Si 0.88 20.85 27.47 -169.99 -4.67 16.18 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 12 C 0.51 9.10 7.37 -10.98 -0.08 9.02 16 13 O -0.53 -11.52 13.92 5.56 0.08 -11.45 16 14 C 0.04 0.48 4.00 -4.97 -0.02 0.46 16 15 N -0.52 -5.94 4.45 -235.91 -1.05 -6.99 16 16 C 0.05 0.58 5.26 -3.77 -0.02 0.56 16 17 C 0.06 0.57 5.39 -3.77 -0.02 0.55 16 18 N -0.48 -3.66 4.76 -170.82 -0.81 -4.48 16 19 C 0.12 0.93 5.64 -83.63 -0.47 0.46 16 20 C -0.10 -0.68 9.32 -39.09 -0.36 -1.04 16 21 C -0.06 -0.49 9.59 -39.47 -0.38 -0.87 16 22 C 0.13 1.36 7.77 -146.19 -1.14 0.22 16 23 N 0.03 0.43 4.45 32.88 0.15 0.57 16 24 O -0.13 -1.78 19.02 -29.46 -0.56 -2.34 16 25 O -0.16 -1.99 18.42 -29.46 -0.54 -2.54 16 26 N -0.40 -4.33 10.03 -10.12 -0.10 -4.43 16 27 C 0.07 0.55 10.00 -17.31 -0.17 0.37 16 28 C 0.04 0.29 4.30 -3.76 -0.02 0.27 16 29 C 0.06 0.42 5.61 -3.76 -0.02 0.40 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 32 H 0.06 0.62 6.44 -51.93 -0.33 0.28 16 33 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 34 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.06 0.68 7.38 -51.93 -0.38 0.30 16 37 H 0.10 0.95 7.99 -51.93 -0.41 0.54 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.12 1.85 5.85 -51.93 -0.30 1.54 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.71 6.90 -51.93 -0.36 0.35 16 42 H 0.16 0.75 7.29 -52.48 -0.38 0.37 16 43 H 0.17 0.94 7.60 -52.49 -0.40 0.54 16 44 H 0.18 1.00 5.83 -52.49 -0.31 0.69 16 45 H 0.07 0.46 7.60 -51.93 -0.39 0.07 16 46 H 0.09 0.41 7.19 -51.93 -0.37 0.04 16 47 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 48 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -35.09 393.33 -10.38 -45.47 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -6.49 Total: -2.46 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -2.55 Total: 4.19 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -1.57 Total: -52.98 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -1.03 Total: -16.33 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.09 -10.38 -45.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026488663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.275 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds