Wall clock time and date at job start Tue Mar 31 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00352 * 2 1 4 4 C 1.50704 * 109.47056 * 270.00510 * 3 2 1 5 5 H 1.07998 * 120.00154 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99692 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99695 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00292 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46965 * 90.00315 * 8 6 4 10 10 H 1.48501 * 109.47201 * 210.00367 * 8 6 4 11 11 H 1.48496 * 109.47104 * 330.00541 * 8 6 4 12 12 C 1.34776 * 119.99801 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99940 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99978 * 359.97438 * 12 2 1 15 15 N 1.46906 * 109.47109 * 180.02562 * 14 12 2 16 16 C 1.46959 * 110.99831 * 293.79913 * 15 14 12 17 17 C 1.53048 * 109.36410 * 176.81063 * 16 15 14 18 18 N 1.46959 * 109.36409 * 58.40073 * 17 16 15 19 19 C 1.39705 * 111.00065 * 176.81320 * 18 17 16 20 20 C 1.39316 * 120.48996 * 303.52187 * 19 18 17 21 21 C 1.38494 * 118.35575 * 179.71889 * 20 19 18 22 22 C 1.38278 * 119.24297 * 0.57351 * 21 20 19 23 23 N 1.48006 * 119.53878 * 179.70441 * 22 21 20 24 24 O 1.21793 * 120.00307 * 179.97438 * 23 22 21 25 25 O 1.21803 * 119.99393 * 359.97438 * 23 22 21 26 26 N 1.31856 * 120.92731 * 359.69012 * 22 21 20 27 27 C 1.31823 * 121.79824 * 0.02562 * 26 22 21 28 28 C 1.46959 * 110.88119 * 300.67921 * 18 17 16 29 29 C 1.46955 * 110.99744 * 169.99905 * 15 14 12 30 30 H 1.08999 * 109.46908 * 270.00137 * 1 2 3 31 31 H 1.09000 * 109.47065 * 29.99587 * 1 2 3 32 32 H 1.09002 * 109.47641 * 149.99946 * 1 2 3 33 33 H 1.09002 * 109.47248 * 30.00186 * 3 2 1 34 34 H 1.09000 * 109.47481 * 150.00438 * 3 2 1 35 35 H 0.97000 * 120.00234 * 179.97438 * 7 6 4 36 36 H 1.08992 * 109.46894 * 60.00096 * 14 12 2 37 37 H 1.09004 * 109.47113 * 300.00247 * 14 12 2 38 38 H 1.08995 * 109.48972 * 296.77903 * 16 15 14 39 39 H 1.08998 * 109.48999 * 56.84502 * 16 15 14 40 40 H 1.08999 * 109.48951 * 298.43451 * 17 16 15 41 41 H 1.09000 * 109.50530 * 178.37669 * 17 16 15 42 42 H 1.08003 * 120.81946 * 359.97438 * 20 19 18 43 43 H 1.07998 * 120.38185 * 180.26456 * 21 20 19 44 44 H 1.07998 * 119.66576 * 180.02562 * 27 26 22 45 45 H 1.08995 * 109.48972 * 299.35239 * 28 18 17 46 46 H 1.08993 * 109.50763 * 179.29948 * 28 18 17 47 47 H 1.08994 * 109.48867 * 303.15267 * 29 15 14 48 48 H 1.09001 * 109.49150 * 63.20104 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.3465 3.2568 -2.9127 8 14 3.7340 3.9286 -0.2529 9 1 5.1072 3.5066 0.1235 10 1 3.7500 5.3553 -0.6647 11 1 2.8277 3.7594 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3852 -2.4723 -0.0005 15 7 2.3398 -3.5889 -0.0005 16 6 3.1029 -3.6295 -1.2559 17 6 4.1383 -4.7542 -1.1842 18 7 3.4536 -6.0325 -0.9460 19 6 4.3614 -7.0944 -0.9459 20 6 5.1849 -7.3204 -2.0467 21 6 6.0728 -8.3821 -1.9970 22 6 6.1044 -9.1841 -0.8710 23 7 7.0461 -10.3245 -0.8136 24 8 7.0814 -11.0360 0.1743 25 8 7.7857 -10.5513 -1.7544 26 7 5.3077 -8.9469 0.1525 27 6 4.4521 -7.9440 0.1490 28 6 2.6906 -5.9920 0.3094 29 6 1.6550 -4.8672 0.2377 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6085 2.0283 0.5139 34 1 3.1500 1.1383 0.5138 35 1 3.8233 4.0827 -3.0900 36 1 0.7583 -2.5298 -0.8902 37 1 0.7589 -2.5302 0.8897 38 1 2.4238 -3.8129 -2.0884 39 1 3.6108 -2.6765 -1.4036 40 1 4.8339 -4.5567 -0.3686 41 1 4.6862 -4.8050 -2.1252 42 1 5.1351 -6.6808 -2.9156 43 1 6.7294 -8.5845 -2.8302 44 1 3.8159 -7.7812 1.0063 45 1 3.3697 -5.8086 1.1419 46 1 2.1827 -6.9449 0.4575 47 1 1.1075 -4.8165 1.1788 48 1 0.9591 -5.0645 -0.5777 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026488663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:43 Heat of formation + Delta-G solvation = 22.239048 kcal Electronic energy + Delta-G solvation = -32170.142616 eV Core-core repulsion = 27650.037658 eV Total energy + Delta-G solvation = -4520.104958 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 363.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.37703 -42.13731 -40.92581 -39.74641 -37.74870 -37.06785 -36.37727 -34.69708 -34.02373 -32.63931 -32.07670 -31.00337 -29.48707 -27.63628 -27.16202 -26.31073 -25.55050 -24.12913 -23.77346 -23.32548 -21.19418 -20.70793 -20.01914 -19.86535 -19.14289 -18.77211 -18.68989 -18.05994 -17.60180 -17.22003 -16.75289 -16.50979 -16.37876 -16.08582 -15.76053 -15.61949 -15.41761 -15.24052 -14.93859 -14.71625 -14.56436 -14.18421 -13.94037 -13.91774 -13.62382 -13.23239 -13.14805 -12.95214 -12.83802 -12.72707 -12.52578 -12.45776 -12.37278 -12.35492 -12.23426 -12.04664 -12.00959 -11.84927 -11.74743 -11.27596 -11.04975 -10.83555 -10.53529 -9.52186 -9.35930 -9.29788 -8.34533 -6.38963 -1.42767 -0.28426 0.06063 0.08844 1.32604 1.36057 1.44273 1.85440 2.00843 2.22568 2.30185 2.34974 2.90188 2.92418 3.00349 3.17419 3.37246 3.44054 3.60757 3.69843 3.97213 4.10555 4.11149 4.17339 4.21414 4.29539 4.30867 4.45357 4.46501 4.49053 4.53903 4.69035 4.69815 4.77405 4.82408 4.85466 4.88942 4.96185 4.98049 5.00963 5.14415 5.42780 5.46175 5.58907 5.63598 5.84785 5.97640 6.05921 6.24386 6.55516 6.62326 6.76368 7.22505 7.49503 8.82034 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.001811 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.253283 B =15458.746004 C =16420.620974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.225 3.775 4 C -0.531 4.531 5 H 0.029 0.971 6 C 0.010 3.990 7 N -0.945 5.945 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.277 1.277 11 H -0.238 1.238 12 C 0.495 3.505 13 O -0.577 6.577 14 C 0.054 3.946 15 N -0.540 5.540 16 C 0.054 3.946 17 C 0.070 3.930 18 N -0.474 5.474 19 C 0.128 3.872 20 C -0.095 4.095 21 C -0.053 4.053 22 C 0.103 3.897 23 N 0.035 4.965 24 O -0.182 6.182 25 O -0.150 6.150 26 N -0.434 5.434 27 C 0.074 3.926 28 C 0.039 3.961 29 C 0.057 3.943 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.017 0.983 35 H 0.267 0.733 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.105 0.895 42 H 0.189 0.811 43 H 0.187 0.813 44 H 0.206 0.794 45 H 0.068 0.932 46 H 0.122 0.878 47 H 0.114 0.886 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 -21.261 5.852 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.343 5.343 3 C 0.102 3.898 4 C -0.570 4.570 5 H 0.048 0.952 6 C -0.188 4.188 7 N -0.585 5.585 8 Si 0.769 3.231 9 H -0.203 1.203 10 H -0.203 1.203 11 H -0.161 1.161 12 C 0.284 3.716 13 O -0.456 6.456 14 C -0.077 4.077 15 N -0.266 5.266 16 C -0.075 4.075 17 C -0.055 4.055 18 N -0.187 5.187 19 C 0.024 3.976 20 C -0.123 4.123 21 C -0.075 4.075 22 C -0.113 4.113 23 N 0.551 4.449 24 O -0.393 6.393 25 O -0.367 6.367 26 N -0.147 5.147 27 C -0.091 4.091 28 C -0.087 4.087 29 C -0.070 4.070 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.124 0.876 42 H 0.206 0.794 43 H 0.204 0.796 44 H 0.222 0.778 45 H 0.086 0.914 46 H 0.140 0.860 47 H 0.132 0.868 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.672 -21.070 6.465 23.028 hybrid contribution 0.752 1.045 -0.807 1.519 sum -5.920 -20.025 5.659 21.635 Atomic orbital electron populations 1.21968 0.77660 1.03913 1.02982 1.47975 1.08408 1.05934 1.71979 1.19285 0.92692 0.82682 0.95148 1.21546 1.36460 1.06565 0.92443 0.95214 1.25835 0.95470 0.99037 0.98445 1.70042 1.42792 1.24484 1.21176 0.85741 0.79525 0.77785 0.80047 1.20350 1.20255 1.16141 1.21262 0.88064 0.86304 0.76009 1.90610 1.16201 1.87683 1.51119 1.21955 0.93590 0.87131 1.05011 1.61774 1.26214 1.03322 1.35261 1.22201 0.96235 0.98672 0.90345 1.22328 0.95283 0.84733 1.03108 1.59096 1.21746 1.02581 1.35298 1.20509 0.89456 0.93976 0.93684 1.21675 0.93915 0.97396 0.99321 1.21888 0.97714 0.91248 0.96686 1.21469 0.99206 0.93999 0.96653 1.43687 1.00090 1.01329 0.99782 1.94569 1.74796 1.46551 1.23388 1.94504 1.37233 1.75916 1.29030 1.66221 1.03168 1.18541 1.26721 1.23423 0.96688 0.90418 0.98614 1.22730 0.96489 1.01100 0.88377 1.22326 0.95035 0.86133 1.03507 0.90119 0.91910 0.89178 0.93503 0.96459 0.92355 0.90371 0.84644 0.93665 0.91222 0.92941 0.87637 0.79410 0.79594 0.77778 0.91411 0.85983 0.86813 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.85 10.24 127.77 1.31 3.16 16 2 N -0.61 -22.27 2.86 -851.14 -2.43 -24.70 16 3 C 0.22 10.34 4.23 85.64 0.36 10.71 16 4 C -0.53 -29.97 9.94 25.60 0.25 -29.71 16 5 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 6 C 0.01 0.58 5.47 84.66 0.46 1.04 16 7 N -0.94 -58.19 13.96 21.45 0.30 -57.90 16 8 Si 0.95 43.25 27.47 68.60 1.88 45.13 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 12 C 0.50 17.50 7.37 87.66 0.65 18.14 16 13 O -0.58 -26.06 13.92 -3.04 -0.04 -26.10 16 14 C 0.05 1.15 4.00 85.56 0.34 1.49 16 15 N -0.54 -11.08 4.45 -900.27 -4.00 -15.08 16 16 C 0.05 1.24 5.26 86.31 0.45 1.69 16 17 C 0.07 1.19 5.39 86.31 0.47 1.65 16 18 N -0.47 -5.84 4.76 -694.37 -3.31 -9.15 16 19 C 0.13 1.57 5.64 38.30 0.22 1.78 16 20 C -0.10 -1.01 9.32 22.59 0.21 -0.80 16 21 C -0.05 -0.71 9.59 22.34 0.21 -0.49 16 22 C 0.10 2.13 7.77 129.66 1.01 3.14 16 23 N 0.03 0.88 4.45 -49.88 -0.22 0.66 16 24 O -0.18 -5.35 19.02 18.90 0.36 -4.99 16 25 O -0.15 -3.65 18.42 18.88 0.35 -3.31 16 26 N -0.43 -8.94 10.03 -185.93 -1.87 -10.80 16 27 C 0.07 1.02 10.00 84.85 0.85 1.87 16 28 C 0.04 0.36 4.30 86.31 0.37 0.73 16 29 C 0.06 0.64 5.61 86.31 0.48 1.12 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.70 8.07 -2.39 -0.02 1.68 16 32 H 0.09 1.58 6.44 -2.39 -0.02 1.56 16 33 H 0.05 1.99 7.13 -2.39 -0.02 1.97 16 34 H 0.02 0.87 6.85 -2.39 -0.02 0.85 16 35 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.08 1.45 7.38 -2.39 -0.02 1.44 16 37 H 0.14 1.94 7.99 -2.38 -0.02 1.92 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 2.31 5.85 -2.39 -0.01 2.30 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.11 1.45 6.90 -2.39 -0.02 1.43 16 42 H 0.19 1.08 7.29 -2.91 -0.02 1.06 16 43 H 0.19 1.67 7.60 -2.91 -0.02 1.65 16 44 H 0.21 1.63 5.83 -2.91 -0.02 1.61 16 45 H 0.07 0.69 7.60 -2.39 -0.02 0.67 16 46 H 0.12 0.49 7.19 -2.39 -0.02 0.48 16 47 H 0.11 0.78 8.07 -2.39 -0.02 0.76 16 48 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -83.31 393.33 -0.39 -83.70 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.94 Total: 7.02 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 7.65 Total: 15.52 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -11.53 Total: -116.97 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: 0.66 Total: -34.40 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.13 kcal Total: -83.31 -0.39 -83.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026488663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.936 kcal (2) G-P(sol) polarization free energy of solvation -83.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds